Wall clock time and date at job start Tue Mar 31 2020 10:37:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.46969 * 2 1 4 4 C 1.53001 * 109.47579 * 64.99730 * 3 2 1 5 5 C 1.52998 * 109.47009 * 185.00117 * 4 3 2 6 6 C 1.50704 * 109.47113 * 184.99917 * 3 2 1 7 7 N 1.29524 * 126.13998 * 300.01943 * 6 3 2 8 8 N 1.26254 * 116.57698 * 179.97438 * 7 6 3 9 9 C 1.29882 * 117.66102 * 359.97438 * 8 7 6 10 10 N 1.39080 * 125.65705 * 180.02562 * 9 8 7 11 11 C 1.34785 * 119.99300 * 359.97226 * 10 9 8 12 12 O 1.21281 * 120.00353 * 0.02562 * 11 10 9 13 13 C 1.50700 * 119.99602 * 179.97438 * 11 10 9 14 14 S 1.81003 * 109.47025 * 180.02562 * 13 11 10 15 15 C 1.76197 * 100.00055 * 180.02562 * 14 13 11 16 16 H 1.07999 * 119.99790 * 359.97438 * 15 14 13 17 17 C 1.38798 * 119.99854 * 180.02562 * 15 14 13 18 18 N 1.31632 * 119.99793 * 179.97438 * 17 15 14 19 19 Si 1.86797 * 120.00077 * 359.97438 * 17 15 14 20 20 H 1.48499 * 109.47309 * 90.00037 * 19 17 15 21 21 H 1.48503 * 109.46743 * 210.00247 * 19 17 15 22 22 H 1.48495 * 109.47166 * 329.99977 * 19 17 15 23 23 S 1.71314 * 108.69735 * 0.02562 * 9 8 7 24 24 H 1.09005 * 109.46938 * 60.00483 * 1 2 3 25 25 H 1.08998 * 109.47274 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47596 * 300.00223 * 1 2 3 27 27 H 1.08992 * 109.47283 * 239.99466 * 2 1 3 28 28 H 1.09005 * 109.46938 * 119.99517 * 2 1 3 29 29 H 1.09001 * 109.46802 * 304.99073 * 3 2 1 30 30 H 1.09003 * 109.46782 * 305.00110 * 4 3 2 31 31 H 1.09000 * 109.47165 * 65.00067 * 4 3 2 32 32 H 1.08997 * 109.46876 * 180.02562 * 5 4 3 33 33 H 1.09003 * 109.47343 * 299.99649 * 5 4 3 34 34 H 1.09000 * 109.47198 * 59.99970 * 5 4 3 35 35 H 0.96991 * 120.00499 * 179.97438 * 10 9 8 36 36 H 1.09001 * 109.47147 * 300.00704 * 13 11 10 37 37 H 1.09001 * 109.46753 * 60.00659 * 13 11 10 38 38 H 0.97003 * 120.00194 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.6351 2.1267 1.3073 5 6 2.0352 3.6025 1.2557 6 6 3.5419 1.4443 -0.1238 7 7 4.3770 0.8959 0.7005 8 7 5.6029 1.0071 0.4200 9 6 5.9179 1.6552 -0.6606 10 7 7.2097 1.8762 -1.1259 11 6 8.2651 1.3999 -0.4360 12 8 8.0883 0.7784 0.5903 13 6 9.6649 1.6389 -0.9405 14 16 10.8532 0.8814 0.1955 15 6 12.3609 1.3025 -0.6132 16 1 12.3406 1.8681 -1.5330 17 6 13.5746 0.9065 -0.0686 18 7 14.7009 1.2207 -0.6731 19 14 13.6096 -0.0723 1.5220 20 1 13.5585 -1.5236 1.2114 21 1 14.8603 0.2317 2.2627 22 1 12.4380 0.2969 2.3563 23 16 4.4783 2.1928 -1.4178 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 1.6054 1.9814 -0.8419 30 1 0.5561 2.0471 1.4400 31 1 2.1407 1.6422 2.1426 32 1 1.7473 4.0898 2.1872 33 1 3.1142 3.6820 1.1230 34 1 1.5297 4.0870 0.4203 35 1 7.3512 2.3730 -1.9469 36 1 9.7752 1.1953 -1.9301 37 1 9.8515 2.7111 -1.0002 38 1 15.5492 0.9442 -0.2923 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036760163.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:37:03 Heat of formation + Delta-G solvation = -7.736201 kcal Electronic energy + Delta-G solvation = -20758.719377 eV Core-core repulsion = 17467.599053 eV Total energy + Delta-G solvation = -3291.120324 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.082 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.49182 -40.90552 -38.11263 -36.36280 -34.69016 -32.67559 -32.20420 -30.73844 -28.29026 -27.84816 -26.25357 -24.02798 -23.53788 -22.03451 -20.97113 -20.08585 -19.60983 -18.28795 -17.80339 -17.41856 -17.13310 -16.62819 -16.29605 -15.93200 -15.44627 -15.25834 -15.12016 -14.88968 -14.66144 -14.38309 -13.96606 -13.39054 -13.38283 -13.05957 -12.94593 -12.82719 -12.74437 -12.55152 -12.41513 -11.94886 -11.90209 -11.80366 -11.66864 -11.45639 -11.20229 -11.19350 -10.85456 -10.61130 -10.57748 -9.91116 -9.04532 -8.53609 -6.25136 -0.63179 -0.54845 0.08709 0.89193 1.19946 1.29429 1.39541 1.48824 1.71399 1.81140 2.22286 2.60303 2.84911 3.03423 3.39464 3.74025 3.91878 3.95417 4.00699 4.14087 4.36025 4.37270 4.39378 4.54945 4.63412 4.70354 4.80062 4.85584 4.98585 5.11148 5.22845 5.24979 5.29101 5.45140 5.51810 5.69161 5.83852 6.10602 6.75171 6.91921 7.62377 8.58329 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.033489 B = 0.002513 C = 0.002457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.906037 B =11137.608814 C =11394.740446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.113 4.113 3 C -0.001 4.001 4 C -0.113 4.113 5 C -0.155 4.155 6 C 0.016 3.984 7 N -0.262 5.262 8 N -0.323 5.323 9 C 0.206 3.794 10 N -0.611 5.611 11 C 0.530 3.470 12 O -0.497 6.497 13 C -0.104 4.104 14 S -0.177 6.177 15 C -0.525 4.525 16 H 0.070 0.930 17 C 0.048 3.952 18 N -0.913 5.913 19 Si 0.909 3.091 20 H -0.264 1.264 21 H -0.259 1.259 22 H -0.239 1.239 23 S 0.186 5.814 24 H 0.071 0.929 25 H 0.059 0.941 26 H 0.067 0.933 27 H 0.061 0.939 28 H 0.054 0.946 29 H 0.123 0.877 30 H 0.105 0.895 31 H 0.051 0.949 32 H 0.062 0.938 33 H 0.026 0.974 34 H 0.077 0.923 35 H 0.446 0.554 36 H 0.129 0.871 37 H 0.130 0.870 38 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.234 5.266 -5.111 33.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.153 4.153 3 C -0.024 4.024 4 C -0.152 4.152 5 C -0.212 4.212 6 C -0.267 4.267 7 N -0.097 5.097 8 N -0.167 5.167 9 C -0.164 4.164 10 N -0.267 5.267 11 C 0.314 3.686 12 O -0.366 6.366 13 C -0.255 4.255 14 S 0.050 5.950 15 C -0.673 4.673 16 H 0.088 0.912 17 C -0.158 4.158 18 N -0.551 5.551 19 Si 0.732 3.268 20 H -0.188 1.188 21 H -0.183 1.183 22 H -0.163 1.163 23 S 0.429 5.571 24 H 0.090 0.910 25 H 0.078 0.922 26 H 0.086 0.914 27 H 0.080 0.920 28 H 0.073 0.927 29 H 0.141 0.859 30 H 0.123 0.877 31 H 0.070 0.930 32 H 0.081 0.919 33 H 0.045 0.955 34 H 0.096 0.904 35 H 0.289 0.711 36 H 0.148 0.852 37 H 0.148 0.852 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -32.028 4.078 -3.185 32.443 hybrid contribution 1.534 0.428 -0.928 1.843 sum -30.494 4.506 -4.113 31.098 Atomic orbital electron populations 1.21813 0.92905 1.02619 1.03191 1.21541 0.97772 0.93674 1.02265 1.20198 0.81406 0.99153 1.01608 1.21664 1.03096 0.95345 0.95120 1.21829 1.00074 0.96179 1.03141 1.30658 1.03652 0.99505 0.92899 1.71338 0.94625 1.18497 1.25228 1.71533 1.09985 1.19771 1.15442 1.26172 0.93611 1.00491 0.96152 1.42806 0.99740 1.55756 1.28362 1.20589 0.86193 0.78184 0.83647 1.90852 1.85245 1.36886 1.23579 1.23223 0.90854 1.07207 1.04179 1.84951 1.00074 1.74342 1.35668 1.22411 0.91322 1.41127 1.12440 0.91186 1.25485 0.94283 0.95802 1.00192 1.70001 0.98242 1.46000 1.40886 0.85939 0.80114 0.80036 0.80741 1.18833 1.18309 1.16344 1.84269 0.94136 1.52983 1.25744 0.91028 0.92239 0.91362 0.92017 0.92685 0.85897 0.87701 0.93034 0.91928 0.95497 0.90375 0.71116 0.85249 0.85227 0.91334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.67 71.98 0.70 -0.38 16 2 C -0.11 -1.42 5.38 30.59 0.16 -1.26 16 3 C 0.00 -0.01 2.33 -11.54 -0.03 -0.03 16 4 C -0.11 -1.38 5.26 30.59 0.16 -1.22 16 5 C -0.15 -1.89 9.73 71.98 0.70 -1.19 16 6 C 0.02 0.32 5.29 88.45 0.47 0.79 16 7 N -0.26 -7.98 11.65 -47.67 -0.56 -8.54 16 8 N -0.32 -11.49 9.74 -59.09 -0.58 -12.06 16 9 C 0.21 5.62 8.14 179.10 1.46 7.07 16 10 N -0.61 -15.22 5.41 -313.15 -1.69 -16.91 16 11 C 0.53 18.47 7.81 87.66 0.68 19.15 16 12 O -0.50 -22.60 14.54 -3.03 -0.04 -22.64 16 13 C -0.10 -3.65 6.16 71.24 0.44 -3.21 16 14 S -0.18 -8.79 18.55 -56.49 -1.05 -9.84 16 15 C -0.53 -29.80 10.04 67.95 0.68 -29.12 16 16 H 0.07 4.12 8.03 -2.91 -0.02 4.10 16 17 C 0.05 2.80 5.50 84.86 0.47 3.26 16 18 N -0.91 -54.88 13.97 21.65 0.30 -54.58 16 19 Si 0.91 45.01 27.74 68.60 1.90 46.92 16 20 H -0.26 -12.81 7.11 99.48 0.71 -12.10 16 21 H -0.26 -12.04 7.11 99.48 0.71 -11.33 16 22 H -0.24 -11.95 6.74 99.48 0.67 -11.28 16 23 S 0.19 3.07 23.31 -56.49 -1.32 1.75 16 24 H 0.07 0.32 8.14 -2.38 -0.02 0.30 16 25 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 26 H 0.07 0.40 6.46 -2.39 -0.02 0.39 16 27 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.05 0.94 8.14 -2.38 -0.02 0.92 16 29 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.10 0.74 6.34 -2.39 -0.02 0.73 16 31 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.03 0.45 7.38 -2.39 -0.02 0.43 16 34 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.45 6.51 8.82 -92.72 -0.82 5.69 16 36 H 0.13 3.96 8.14 -2.39 -0.02 3.94 16 37 H 0.13 3.97 8.14 -2.39 -0.02 3.95 16 38 H 0.28 15.45 8.31 -92.71 -0.77 14.68 16 Total: -1.00 -80.54 347.93 3.10 -77.44 By element: Atomic # 1 Polarization: 4.36 SS G_CDS: 0.23 Total: 4.59 kcal Atomic # 6 Polarization: -12.02 SS G_CDS: 5.89 Total: -6.13 kcal Atomic # 7 Polarization: -89.57 SS G_CDS: -2.52 Total: -92.09 kcal Atomic # 8 Polarization: -22.60 SS G_CDS: -0.04 Total: -22.64 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 1.90 Total: 46.92 kcal Atomic # 16 Polarization: -5.72 SS G_CDS: -2.36 Total: -8.09 kcal Total: -80.54 3.10 -77.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036760163.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.706 kcal (2) G-P(sol) polarization free energy of solvation -80.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds