Wall clock time and date at job start Tue Mar 31 2020 11:06:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47290 * 2 1 4 4 C 1.50698 * 109.47198 * 120.00273 * 2 1 3 5 5 C 1.38206 * 120.00241 * 16.14058 * 4 2 1 6 6 C 1.38424 * 120.00008 * 179.97438 * 5 4 2 7 7 F 1.35100 * 119.99888 * 179.97438 * 6 5 4 8 8 C 1.38477 * 120.00266 * 0.02562 * 6 5 4 9 9 C 1.38158 * 119.99593 * 359.95798 * 8 6 5 10 10 C 1.38435 * 119.99636 * 195.87347 * 4 2 1 11 11 F 1.35094 * 120.00576 * 0.02562 * 10 4 2 12 12 N 1.46499 * 109.47222 * 239.99796 * 2 1 3 13 13 C 1.46500 * 120.00495 * 303.84275 * 12 2 1 14 14 C 1.34783 * 119.99858 * 123.83824 * 12 2 1 15 15 O 1.21273 * 120.00137 * 0.02562 * 14 12 2 16 16 C 1.50705 * 119.99815 * 179.97438 * 14 12 2 17 17 S 1.81000 * 109.46760 * 180.02562 * 16 14 12 18 18 C 1.76207 * 99.99645 * 180.02562 * 17 16 14 19 19 H 1.07994 * 119.99794 * 0.02562 * 18 17 16 20 20 C 1.38800 * 119.99727 * 179.97438 * 18 17 16 21 21 N 1.31625 * 119.99983 * 179.97438 * 20 18 17 22 22 Si 1.86806 * 120.00040 * 0.02562 * 20 18 17 23 23 H 1.48503 * 109.46793 * 89.99628 * 22 20 18 24 24 H 1.48493 * 109.46751 * 209.99273 * 22 20 18 25 25 H 1.48493 * 109.46969 * 329.99828 * 22 20 18 26 26 H 1.09002 * 109.47347 * 299.99798 * 1 2 3 27 27 H 1.09002 * 109.47216 * 60.00359 * 1 2 3 28 28 H 1.09008 * 109.46825 * 180.02562 * 1 2 3 29 29 H 1.07995 * 119.99743 * 0.02562 * 5 4 2 30 30 H 1.08002 * 119.99789 * 179.97438 * 8 6 5 31 31 H 1.08003 * 119.99856 * 180.02562 * 9 8 6 32 32 H 1.09002 * 109.47112 * 95.35826 * 13 12 2 33 33 H 1.09001 * 109.47579 * 215.36616 * 13 12 2 34 34 H 1.09002 * 109.46671 * 335.36741 * 13 12 2 35 35 H 1.08997 * 109.47494 * 300.00350 * 16 14 12 36 36 H 1.09003 * 109.46467 * 60.00837 * 16 14 12 37 37 H 0.96999 * 120.00314 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 1.1787 -1.5160 1.9602 6 6 1.6404 -2.1690 3.0900 7 9 0.8058 -2.9561 3.8037 8 6 2.9573 -2.0147 3.4895 9 6 3.8106 -1.2097 2.7598 10 6 3.3503 -0.5605 1.6266 11 9 4.1860 0.2230 0.9105 12 7 2.0183 -0.6906 -1.1961 13 6 1.5964 -2.0663 -1.4714 14 6 2.8558 -0.0603 -2.0435 15 8 3.2054 1.0783 -1.8155 16 6 3.3586 -0.7710 -3.2737 17 16 4.4561 0.3303 -4.2003 18 6 4.8831 -0.7245 -5.5457 19 1 4.4777 -1.7241 -5.5978 20 6 5.7396 -0.2702 -6.5389 21 7 6.0590 -1.0582 -7.5436 22 14 6.4402 1.4592 -6.4490 23 1 7.7223 1.4355 -5.7000 24 1 6.6792 1.9684 -7.8233 25 1 5.4762 2.3481 -5.7522 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0278 0.0005 29 1 0.1518 -1.6367 1.6484 30 1 3.3172 -2.5239 4.3713 31 1 4.8378 -1.0896 3.0711 32 1 0.7434 -2.0559 -2.1500 33 1 2.4195 -2.6139 -1.9306 34 1 1.3122 -2.5527 -0.5382 35 1 3.9070 -1.6654 -2.9780 36 1 2.5131 -1.0539 -3.9008 37 1 6.6573 -0.7407 -8.2380 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041814217.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:54 Heat of formation + Delta-G solvation = -95.763785 kcal Electronic energy + Delta-G solvation = -23787.011465 eV Core-core repulsion = 19905.940841 eV Total energy + Delta-G solvation = -3881.070624 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.085 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.26172 -48.98755 -40.22326 -38.85790 -36.05047 -33.10104 -32.43487 -30.57722 -29.81573 -28.71736 -27.02564 -25.62054 -24.62318 -22.81772 -21.65156 -19.34178 -18.07492 -17.74334 -17.46495 -17.31910 -16.90502 -16.12763 -15.77990 -15.67196 -15.37581 -14.96061 -14.66576 -14.49697 -14.24968 -13.98840 -13.62297 -13.30299 -13.22357 -12.94132 -12.78574 -12.57669 -12.38989 -12.21656 -12.19427 -12.05619 -11.39409 -11.31457 -11.25318 -11.00281 -10.59038 -9.86714 -9.70735 -9.38854 -8.99855 -8.85893 -8.68108 -8.48485 -6.91228 -6.28601 -4.00155 0.56563 0.63557 2.64348 2.90392 2.98806 3.28207 3.34157 3.51259 3.60700 3.77991 3.91120 4.13191 4.23633 4.33667 4.53123 4.63790 4.76793 4.87299 4.95006 5.01146 5.10554 5.20219 5.26055 5.35695 5.42375 5.51947 5.60431 5.62058 5.65379 5.73483 5.76708 5.81107 5.94567 6.01268 6.42892 6.49315 7.38417 7.94467 8.41087 8.41933 9.17733 10.80665 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.024919 B = 0.003251 C = 0.003164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.390928 B = 8610.746913 C = 8846.999664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.178 3.822 3 H 0.117 0.883 4 C -0.105 4.105 5 C -0.119 4.119 6 C 0.083 3.917 7 F -0.137 7.137 8 C -0.123 4.123 9 C -0.128 4.128 10 C 0.112 3.888 11 F -0.117 7.117 12 N -0.615 5.615 13 C 0.078 3.922 14 C 0.534 3.466 15 O -0.509 6.509 16 C -0.119 4.119 17 S -0.142 6.142 18 C -0.521 4.521 19 H 0.088 0.912 20 C 0.096 3.904 21 N -0.881 5.881 22 Si 0.856 3.144 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.063 0.937 29 H 0.150 0.850 30 H 0.145 0.855 31 H 0.147 0.853 32 H 0.059 0.941 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.758 -3.313 22.398 25.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.074 3.926 3 H 0.135 0.865 4 C -0.108 4.108 5 C -0.138 4.138 6 C 0.064 3.936 7 F -0.115 7.115 8 C -0.142 4.142 9 C -0.147 4.147 10 C 0.092 3.908 11 F -0.095 7.095 12 N -0.351 5.351 13 C -0.065 4.065 14 C 0.321 3.679 15 O -0.383 6.383 16 C -0.270 4.270 17 S 0.084 5.916 18 C -0.668 4.668 19 H 0.106 0.894 20 C -0.113 4.113 21 N -0.517 5.517 22 Si 0.681 3.319 23 H -0.192 1.192 24 H -0.200 1.200 25 H -0.159 1.159 26 H 0.090 0.910 27 H 0.089 0.911 28 H 0.082 0.918 29 H 0.167 0.833 30 H 0.162 0.838 31 H 0.165 0.835 32 H 0.078 0.922 33 H 0.093 0.907 34 H 0.087 0.913 35 H 0.114 0.886 36 H 0.115 0.885 37 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -11.134 -1.645 22.524 25.180 hybrid contribution 0.078 -0.970 -0.412 1.056 sum -11.057 -2.614 22.112 24.860 Atomic orbital electron populations 1.22207 0.93732 1.02655 1.03296 1.19749 0.94470 0.97620 0.80730 0.86508 1.20149 0.92397 0.99787 0.98441 1.21044 1.01461 0.97016 0.94257 1.17619 0.88538 0.94729 0.92730 1.91519 1.70949 1.71967 1.77093 1.21010 0.91787 0.99997 1.01362 1.21062 1.01457 0.97779 0.94393 1.17676 0.88013 0.93426 0.91708 1.91649 1.70110 1.71234 1.76552 1.47903 1.48817 1.15122 1.23276 1.21767 1.00988 0.82191 1.01586 1.20351 0.77306 0.86550 0.83653 1.90692 1.55855 1.17713 1.74033 1.23301 1.03636 1.03294 0.96729 1.84799 1.58480 1.21810 1.26469 1.22310 1.34159 1.02370 1.07987 0.89421 1.24706 0.94738 0.97888 0.93933 1.69935 1.34456 1.36313 1.11043 0.86738 0.81546 0.85023 0.78582 1.19199 1.19952 1.15895 0.91001 0.91084 0.91763 0.83282 0.83761 0.83525 0.92209 0.90701 0.91269 0.88601 0.88466 0.91945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.33 7.98 37.16 0.30 -1.03 16 2 C 0.18 2.06 2.55 -69.09 -0.18 1.88 16 3 H 0.12 1.64 6.82 -51.93 -0.35 1.28 16 4 C -0.11 -1.10 4.69 -104.56 -0.49 -1.59 16 5 C -0.12 -0.99 8.45 -39.52 -0.33 -1.33 16 6 C 0.08 0.71 7.30 -39.43 -0.29 0.42 16 7 F -0.14 -1.23 17.27 2.25 0.04 -1.19 16 8 C -0.12 -0.96 10.02 -39.52 -0.40 -1.35 16 9 C -0.13 -1.16 10.02 -39.52 -0.40 -1.56 16 10 C 0.11 1.32 7.24 -39.42 -0.29 1.03 16 11 F -0.12 -1.80 16.74 2.25 0.04 -1.76 16 12 N -0.62 -8.23 2.75 -175.26 -0.48 -8.72 16 13 C 0.08 0.79 9.07 59.85 0.54 1.33 16 14 C 0.53 9.66 7.69 -10.98 -0.08 9.57 16 15 O -0.51 -10.97 15.19 5.56 0.08 -10.89 16 16 C -0.12 -2.34 4.78 36.01 0.17 -2.17 16 17 S -0.14 -3.63 18.55 -107.50 -1.99 -5.62 16 18 C -0.52 -15.04 10.04 30.94 0.31 -14.73 16 19 H 0.09 2.63 8.03 -52.49 -0.42 2.21 16 20 C 0.10 2.82 5.50 -17.43 -0.10 2.72 16 21 N -0.88 -26.64 13.97 55.49 0.78 -25.86 16 22 Si 0.86 21.89 27.74 -169.99 -4.72 17.17 16 23 H -0.27 -6.76 7.11 56.52 0.40 -6.35 16 24 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.23 -6.00 6.74 56.52 0.38 -5.62 16 26 H 0.07 0.49 8.12 -51.93 -0.42 0.06 16 27 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.43 6.15 -51.92 -0.32 0.11 16 29 H 0.15 0.96 5.96 -52.49 -0.31 0.65 16 30 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 31 H 0.15 1.07 8.06 -52.48 -0.42 0.65 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.79 6.66 -51.93 -0.35 0.44 16 34 H 0.07 0.56 6.79 -51.93 -0.35 0.21 16 35 H 0.10 1.78 7.41 -51.92 -0.38 1.39 16 36 H 0.10 1.77 8.11 -51.92 -0.42 1.35 16 37 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 333.27 15.07 5.02 5.02 Total: -1.00 -33.99 333.27 -6.64 -40.63 By element: Atomic # 1 Polarization: 2.20 SS G_CDS: -4.18 Total: -1.99 kcal Atomic # 6 Polarization: -5.58 SS G_CDS: -1.22 Total: -6.80 kcal Atomic # 7 Polarization: -34.87 SS G_CDS: 0.29 Total: -34.58 kcal Atomic # 8 Polarization: -10.97 SS G_CDS: 0.08 Total: -10.89 kcal Atomic # 9 Polarization: -3.03 SS G_CDS: 0.08 Total: -2.95 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.72 Total: 17.17 kcal Atomic # 16 Polarization: -3.63 SS G_CDS: -1.99 Total: -5.62 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -33.99 -6.64 -40.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041814217.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.135 kcal (2) G-P(sol) polarization free energy of solvation -33.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds