Wall clock time and date at job start Tue Mar 31 2020 11:06:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47290 * 2 1 4 4 C 1.50698 * 109.47198 * 120.00273 * 2 1 3 5 5 C 1.38206 * 120.00241 * 16.14058 * 4 2 1 6 6 C 1.38424 * 120.00008 * 179.97438 * 5 4 2 7 7 F 1.35100 * 119.99888 * 179.97438 * 6 5 4 8 8 C 1.38477 * 120.00266 * 0.02562 * 6 5 4 9 9 C 1.38158 * 119.99593 * 359.95798 * 8 6 5 10 10 C 1.38435 * 119.99636 * 195.87347 * 4 2 1 11 11 F 1.35094 * 120.00576 * 0.02562 * 10 4 2 12 12 N 1.46499 * 109.47222 * 239.99796 * 2 1 3 13 13 C 1.46500 * 120.00495 * 303.84275 * 12 2 1 14 14 C 1.34783 * 119.99858 * 123.83824 * 12 2 1 15 15 O 1.21273 * 120.00137 * 0.02562 * 14 12 2 16 16 C 1.50705 * 119.99815 * 179.97438 * 14 12 2 17 17 S 1.81000 * 109.46760 * 180.02562 * 16 14 12 18 18 C 1.76207 * 99.99645 * 180.02562 * 17 16 14 19 19 H 1.07994 * 119.99794 * 0.02562 * 18 17 16 20 20 C 1.38800 * 119.99727 * 179.97438 * 18 17 16 21 21 N 1.31625 * 119.99983 * 179.97438 * 20 18 17 22 22 Si 1.86806 * 120.00040 * 0.02562 * 20 18 17 23 23 H 1.48503 * 109.46793 * 89.99628 * 22 20 18 24 24 H 1.48493 * 109.46751 * 209.99273 * 22 20 18 25 25 H 1.48493 * 109.46969 * 329.99828 * 22 20 18 26 26 H 1.09002 * 109.47347 * 299.99798 * 1 2 3 27 27 H 1.09002 * 109.47216 * 60.00359 * 1 2 3 28 28 H 1.09008 * 109.46825 * 180.02562 * 1 2 3 29 29 H 1.07995 * 119.99743 * 0.02562 * 5 4 2 30 30 H 1.08002 * 119.99789 * 179.97438 * 8 6 5 31 31 H 1.08003 * 119.99856 * 180.02562 * 9 8 6 32 32 H 1.09002 * 109.47112 * 95.35826 * 13 12 2 33 33 H 1.09001 * 109.47579 * 215.36616 * 13 12 2 34 34 H 1.09002 * 109.46671 * 335.36741 * 13 12 2 35 35 H 1.08997 * 109.47494 * 300.00350 * 16 14 12 36 36 H 1.09003 * 109.46467 * 60.00837 * 16 14 12 37 37 H 0.96999 * 120.00314 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 1.1787 -1.5160 1.9602 6 6 1.6404 -2.1690 3.0900 7 9 0.8058 -2.9561 3.8037 8 6 2.9573 -2.0147 3.4895 9 6 3.8106 -1.2097 2.7598 10 6 3.3503 -0.5605 1.6266 11 9 4.1860 0.2230 0.9105 12 7 2.0183 -0.6906 -1.1961 13 6 1.5964 -2.0663 -1.4714 14 6 2.8558 -0.0603 -2.0435 15 8 3.2054 1.0783 -1.8155 16 6 3.3586 -0.7710 -3.2737 17 16 4.4561 0.3303 -4.2003 18 6 4.8831 -0.7245 -5.5457 19 1 4.4777 -1.7241 -5.5978 20 6 5.7396 -0.2702 -6.5389 21 7 6.0590 -1.0582 -7.5436 22 14 6.4402 1.4592 -6.4490 23 1 7.7223 1.4355 -5.7000 24 1 6.6792 1.9684 -7.8233 25 1 5.4762 2.3481 -5.7522 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0278 0.0005 29 1 0.1518 -1.6367 1.6484 30 1 3.3172 -2.5239 4.3713 31 1 4.8378 -1.0896 3.0711 32 1 0.7434 -2.0559 -2.1500 33 1 2.4195 -2.6139 -1.9306 34 1 1.3122 -2.5527 -0.5382 35 1 3.9070 -1.6654 -2.9780 36 1 2.5131 -1.0539 -3.9008 37 1 6.6573 -0.7407 -8.2380 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041814217.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:53 Heat of formation + Delta-G solvation = -116.379975 kcal Electronic energy + Delta-G solvation = -23787.905450 eV Core-core repulsion = 19905.940841 eV Total energy + Delta-G solvation = -3881.964609 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.085 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.97399 -49.94036 -41.29846 -39.84156 -37.15135 -34.68630 -34.07813 -31.41027 -30.75709 -29.85940 -27.94525 -27.86318 -25.43155 -23.55746 -22.62972 -20.57964 -19.63855 -18.84447 -18.39159 -18.29396 -17.97916 -17.20382 -17.05378 -16.86053 -16.68731 -16.34875 -15.84416 -15.40327 -15.24612 -15.17618 -14.94889 -14.58765 -14.46576 -14.09343 -13.77701 -13.62043 -13.43374 -13.31160 -13.20712 -13.02980 -12.97409 -12.90975 -12.62666 -12.13852 -12.06259 -11.87457 -11.18327 -11.00094 -10.54050 -10.24287 -9.83469 -9.58518 -9.01702 -8.52776 -6.23687 -0.18180 -0.05919 0.96672 1.30217 1.44942 1.50934 1.53064 1.98705 2.23961 2.40578 2.67882 2.85519 3.06501 3.17057 3.34332 3.50256 3.65470 3.94032 4.05546 4.11740 4.12738 4.23393 4.25357 4.40369 4.58930 4.63448 4.73262 4.84656 4.88062 4.92874 4.93909 5.01094 5.03224 5.26245 5.48606 5.69712 5.72109 6.09958 6.18342 6.92539 7.06382 8.59710 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.024919 B = 0.003251 C = 0.003164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.390928 B = 8610.746913 C = 8846.999664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.175 3.825 3 H 0.084 0.916 4 C -0.111 4.111 5 C -0.107 4.107 6 C 0.084 3.916 7 F -0.136 7.136 8 C -0.112 4.112 9 C -0.126 4.126 10 C 0.076 3.924 11 F -0.148 7.148 12 N -0.602 5.602 13 C 0.068 3.932 14 C 0.533 3.467 15 O -0.554 6.554 16 C -0.104 4.104 17 S -0.177 6.177 18 C -0.528 4.528 19 H 0.062 0.938 20 C 0.047 3.953 21 N -0.916 5.916 22 Si 0.913 3.087 23 H -0.263 1.263 24 H -0.257 1.257 25 H -0.238 1.238 26 H 0.090 0.910 27 H 0.061 0.939 28 H 0.088 0.912 29 H 0.175 0.825 30 H 0.172 0.828 31 H 0.160 0.840 32 H 0.079 0.921 33 H 0.070 0.930 34 H 0.096 0.904 35 H 0.107 0.893 36 H 0.113 0.887 37 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.406 -4.230 24.526 28.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.072 3.928 3 H 0.102 0.898 4 C -0.113 4.113 5 C -0.126 4.126 6 C 0.064 3.936 7 F -0.114 7.114 8 C -0.131 4.131 9 C -0.145 4.145 10 C 0.057 3.943 11 F -0.126 7.126 12 N -0.336 5.336 13 C -0.073 4.073 14 C 0.320 3.680 15 O -0.431 6.431 16 C -0.255 4.255 17 S 0.050 5.950 18 C -0.675 4.675 19 H 0.081 0.919 20 C -0.158 4.158 21 N -0.554 5.554 22 Si 0.735 3.265 23 H -0.188 1.188 24 H -0.181 1.181 25 H -0.162 1.162 26 H 0.109 0.891 27 H 0.080 0.920 28 H 0.107 0.893 29 H 0.192 0.808 30 H 0.189 0.811 31 H 0.178 0.822 32 H 0.098 0.902 33 H 0.088 0.912 34 H 0.115 0.885 35 H 0.125 0.875 36 H 0.131 0.869 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -12.820 -2.605 24.676 27.929 hybrid contribution 0.479 -0.844 -0.901 1.324 sum -12.342 -3.448 23.774 27.008 Atomic orbital electron populations 1.22192 0.90691 1.04410 1.03858 1.19858 0.96627 0.95969 0.80345 0.89771 1.20006 0.92230 1.00650 0.98413 1.21179 1.02075 0.95683 0.93614 1.17722 0.88760 0.94451 0.92643 1.91532 1.70954 1.71905 1.77043 1.21296 0.91309 0.98897 1.01587 1.21229 1.02437 0.97317 0.93496 1.18164 0.88569 0.94606 0.92993 1.91573 1.71126 1.72420 1.77521 1.47886 1.46875 1.16126 1.22703 1.22068 1.01510 0.80180 1.03592 1.20046 0.78076 0.86032 0.83808 1.90676 1.57908 1.19482 1.75054 1.23266 1.02864 1.02190 0.97147 1.84738 1.60580 1.23482 1.26212 1.22439 1.33960 1.01878 1.09260 0.91932 1.25534 0.95106 1.01507 0.93666 1.70007 1.35383 1.38155 1.11888 0.85889 0.80708 0.80611 0.79306 1.18789 1.18148 1.16155 0.89115 0.91952 0.89285 0.80817 0.81058 0.82216 0.90200 0.91169 0.88539 0.87506 0.86877 0.91322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 7.98 71.98 0.57 -1.55 16 2 C 0.17 3.86 2.55 44.24 0.11 3.98 16 3 H 0.08 2.45 6.82 -2.39 -0.02 2.43 16 4 C -0.11 -2.14 4.69 -19.83 -0.09 -2.23 16 5 C -0.11 -1.42 8.45 22.31 0.19 -1.24 16 6 C 0.08 1.14 7.30 22.37 0.16 1.30 16 7 F -0.14 -1.93 17.27 44.97 0.78 -1.15 16 8 C -0.11 -1.40 10.02 22.31 0.22 -1.18 16 9 C -0.13 -2.08 10.02 22.31 0.22 -1.86 16 10 C 0.08 1.76 7.24 22.37 0.16 1.92 16 11 F -0.15 -4.72 16.74 44.97 0.75 -3.97 16 12 N -0.60 -15.45 2.75 -826.80 -2.28 -17.72 16 13 C 0.07 1.20 9.07 127.77 1.16 2.36 16 14 C 0.53 19.38 7.69 87.66 0.67 20.06 16 15 O -0.55 -24.60 15.19 -3.01 -0.05 -24.64 16 16 C -0.10 -4.08 4.78 71.24 0.34 -3.74 16 17 S -0.18 -9.16 18.55 -56.49 -1.05 -10.21 16 18 C -0.53 -31.10 10.04 67.95 0.68 -30.42 16 19 H 0.06 3.87 8.03 -2.91 -0.02 3.85 16 20 C 0.05 2.81 5.50 84.86 0.47 3.27 16 21 N -0.92 -56.14 13.97 21.65 0.30 -55.84 16 22 Si 0.91 45.59 27.74 68.60 1.90 47.50 16 23 H -0.26 -12.87 7.11 99.48 0.71 -12.16 16 24 H -0.26 -11.98 7.11 99.48 0.71 -11.28 16 25 H -0.24 -11.89 6.74 99.48 0.67 -11.22 16 26 H 0.09 0.94 8.12 -2.39 -0.02 0.92 16 27 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.09 0.79 6.15 -2.38 -0.01 0.77 16 29 H 0.17 1.40 5.96 -2.91 -0.02 1.39 16 30 H 0.17 1.20 8.06 -2.91 -0.02 1.17 16 31 H 0.16 2.11 8.06 -2.91 -0.02 2.08 16 32 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.07 1.33 6.66 -2.39 -0.02 1.32 16 34 H 0.10 1.19 6.79 -2.39 -0.02 1.18 16 35 H 0.11 3.94 7.41 -2.40 -0.02 3.93 16 36 H 0.11 4.06 8.11 -2.39 -0.02 4.04 16 37 H 0.28 15.69 8.31 -92.71 -0.77 14.92 16 Total: -1.00 -76.24 333.27 6.31 -69.93 By element: Atomic # 1 Polarization: 4.37 SS G_CDS: 1.07 Total: 5.44 kcal Atomic # 6 Polarization: -14.20 SS G_CDS: 4.88 Total: -9.32 kcal Atomic # 7 Polarization: -71.59 SS G_CDS: -1.97 Total: -73.56 kcal Atomic # 8 Polarization: -24.60 SS G_CDS: -0.05 Total: -24.64 kcal Atomic # 9 Polarization: -6.66 SS G_CDS: 1.53 Total: -5.13 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 1.90 Total: 47.50 kcal Atomic # 16 Polarization: -9.16 SS G_CDS: -1.05 Total: -10.21 kcal Total: -76.24 6.31 -69.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041814217.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.454 kcal (2) G-P(sol) polarization free energy of solvation -76.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds