Wall clock time and date at job start Tue Mar 31 2020 11:24:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35995 * 116.99655 * 2 1 4 4 C 1.38564 * 120.07625 * 359.72270 * 3 2 1 5 5 C 1.38245 * 119.99792 * 179.79495 * 4 3 2 6 6 C 1.38247 * 120.14929 * 0.45790 * 5 4 3 7 7 C 1.50701 * 119.93158 * 179.77035 * 6 5 4 8 8 C 1.53003 * 109.47173 * 270.02640 * 7 6 5 9 9 N 1.46491 * 109.47109 * 179.97438 * 8 7 6 10 10 S 1.65609 * 119.99887 * 164.99711 * 9 8 7 11 11 O 1.42104 * 106.40009 * 178.54350 * 10 9 8 12 12 O 1.42095 * 106.40018 * 311.46473 * 10 9 8 13 13 C 1.76199 * 107.21361 * 65.00641 * 10 9 8 14 14 H 1.07994 * 120.00267 * 359.97438 * 13 10 9 15 15 C 1.37876 * 119.99530 * 180.02562 * 13 10 9 16 16 N 1.31516 * 120.00589 * 359.97438 * 15 13 10 17 17 Si 1.86809 * 119.99851 * 179.97438 * 15 13 10 18 18 H 1.48494 * 109.47070 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47193 * 119.99470 * 17 15 13 20 20 H 1.48499 * 109.46799 * 239.99916 * 17 15 13 21 21 C 1.38241 * 120.14550 * 359.79719 * 6 5 4 22 22 C 1.38563 * 119.99940 * 359.97369 * 21 6 5 23 23 O 1.35997 * 120.07546 * 180.02562 * 22 21 6 24 24 C 1.42902 * 116.99582 * 359.97438 * 23 22 21 25 25 H 1.08996 * 109.46732 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47144 * 300.00182 * 1 2 3 27 27 H 1.08998 * 109.47043 * 59.99780 * 1 2 3 28 28 H 1.07997 * 120.00260 * 0.02562 * 4 3 2 29 29 H 1.07998 * 119.92433 * 180.21315 * 5 4 3 30 30 H 1.09000 * 109.46763 * 30.02282 * 7 6 5 31 31 H 1.08993 * 109.47638 * 150.02455 * 7 6 5 32 32 H 1.08995 * 109.46896 * 300.00239 * 8 7 6 33 33 H 1.09001 * 109.46846 * 59.99702 * 8 7 6 34 34 H 0.97003 * 120.00482 * 345.00425 * 9 8 7 35 35 H 0.97000 * 120.00527 * 180.02562 * 16 15 13 36 36 H 1.08004 * 120.00331 * 179.97438 * 21 6 5 37 37 H 1.08998 * 109.47287 * 299.99772 * 24 23 22 38 38 H 1.09001 * 109.47198 * 60.00379 * 24 23 22 39 39 H 1.09007 * 109.46665 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2118 0.0000 4 6 1.2932 2.3748 -0.0058 5 6 1.9224 3.6058 -0.0015 6 6 3.3028 3.6799 -0.0010 7 6 3.9836 5.0244 -0.0015 8 6 4.2140 5.4788 -1.4442 9 7 4.8753 6.7860 -1.4447 10 16 5.5805 7.3567 -2.8303 11 8 6.0967 8.6431 -2.5172 12 8 6.3832 6.2992 -3.3367 13 6 4.2920 7.6100 -4.0051 14 1 3.2683 7.3915 -3.7393 15 6 4.5909 8.0861 -5.2640 16 7 5.8376 8.3517 -5.5879 17 14 3.2249 8.3541 -6.5099 18 1 1.9217 7.9821 -5.9031 19 1 3.1945 9.7834 -6.9114 20 1 3.4729 7.5091 -7.7056 21 6 4.0602 2.5235 -0.0005 22 6 3.4359 1.2864 0.0000 23 8 4.1795 0.1478 0.0010 24 6 5.6003 0.3008 0.0009 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 0.2146 2.3197 -0.0099 29 1 1.3341 4.5115 -0.0026 30 1 3.3537 5.7508 0.5120 31 1 4.9417 4.9468 0.5123 32 1 4.8438 4.7524 -1.9577 33 1 3.2559 5.5565 -1.9581 34 1 4.9002 7.3174 -0.6336 35 1 6.0478 8.6871 -6.4735 36 1 5.1386 2.5841 -0.0005 37 1 5.9066 0.8498 -0.8896 38 1 5.9065 0.8513 0.8904 39 1 6.0716 -0.6821 0.0022 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044509368.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:52 Heat of formation + Delta-G solvation = -146.846325 kcal Electronic energy + Delta-G solvation = -23845.359152 eV Core-core repulsion = 20073.160939 eV Total energy + Delta-G solvation = -3772.198214 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.102 amu Computer time = 2.52 seconds Orbital eigenvalues (eV) -40.66015 -38.53911 -37.58770 -35.30167 -34.89359 -33.92682 -33.06834 -31.53016 -30.41985 -28.43998 -27.36809 -26.49365 -26.11620 -23.00826 -22.26831 -21.07627 -19.00247 -18.49722 -17.50092 -17.00233 -16.84148 -16.19457 -16.10614 -15.43571 -15.34380 -14.90981 -14.85053 -14.64545 -14.40240 -14.04572 -13.84688 -13.32918 -13.12442 -12.82102 -12.31474 -12.16926 -12.02713 -11.91604 -11.43507 -11.31444 -11.29378 -11.22677 -11.20348 -11.01073 -10.85291 -10.57668 -10.27194 -10.24710 -10.16756 -9.24557 -9.00119 -8.77679 -8.45591 -7.82647 -6.68893 -5.30304 1.19985 1.35000 2.37387 3.06297 3.13820 3.14734 3.18608 3.21768 3.61932 4.07579 4.59277 4.65367 4.66432 4.82350 4.91911 4.96539 5.00538 5.07638 5.11887 5.16558 5.26544 5.32491 5.38960 5.39804 5.43797 5.59451 5.78137 5.83754 6.07660 6.14516 6.19398 6.26800 6.53160 6.57225 6.63689 6.85880 6.93211 7.33642 7.47606 7.91922 8.00303 8.90753 10.25298 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.016267 B = 0.003283 C = 0.003036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.829471 B = 8527.562532 C = 9219.978779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.309 6.309 3 C 0.090 3.910 4 C -0.170 4.170 5 C -0.111 4.111 6 C -0.070 4.070 7 C -0.086 4.086 8 C 0.132 3.868 9 N -1.139 6.139 10 S 2.716 3.284 11 O -1.008 7.008 12 O -1.008 7.008 13 C -1.020 5.020 14 H 0.102 0.898 15 C 0.133 3.867 16 N -0.846 5.846 17 Si 0.920 3.080 18 H -0.263 1.263 19 H -0.271 1.271 20 H -0.271 1.271 21 C -0.166 4.166 22 C 0.100 3.900 23 O -0.309 6.309 24 C 0.024 3.976 25 H 0.097 0.903 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.134 0.866 29 H 0.129 0.871 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.061 0.939 34 H 0.401 0.599 35 H 0.290 0.710 36 H 0.138 0.862 37 H 0.059 0.941 38 H 0.054 0.946 39 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.242 -14.009 12.519 20.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.223 6.223 3 C 0.045 3.955 4 C -0.189 4.189 5 C -0.129 4.129 6 C -0.072 4.072 7 C -0.125 4.125 8 C 0.005 3.995 9 N -0.893 5.893 10 S 2.815 3.185 11 O -0.998 6.998 12 O -0.997 6.997 13 C -1.154 5.154 14 H 0.120 0.880 15 C -0.085 4.085 16 N -0.475 5.475 17 Si 0.744 3.256 18 H -0.186 1.186 19 H -0.196 1.196 20 H -0.196 1.196 21 C -0.185 4.185 22 C 0.055 3.945 23 O -0.223 6.223 24 C -0.071 4.071 25 H 0.116 0.884 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.151 0.849 29 H 0.147 0.853 30 H 0.098 0.902 31 H 0.096 0.904 32 H 0.093 0.907 33 H 0.079 0.921 34 H 0.232 0.768 35 H 0.100 0.900 36 H 0.156 0.844 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -8.134 -14.326 12.117 20.450 hybrid contribution -1.378 0.685 -0.569 1.640 sum -9.512 -13.641 11.548 20.246 Atomic orbital electron populations 1.23037 0.78826 1.03749 1.01202 1.86155 1.20798 1.26077 1.89264 1.18230 0.89125 0.85156 1.03001 1.21027 0.99815 0.91467 1.06567 1.20801 0.93868 0.97185 1.01092 1.19532 0.93336 0.94523 0.99769 1.20815 1.00872 0.93010 0.97785 1.21013 0.97813 0.84979 0.95682 1.55993 1.76121 1.27676 1.29551 1.00364 0.74384 0.72218 0.71500 1.93374 1.80215 1.41655 1.84547 1.93352 1.69114 1.58358 1.78916 1.30584 1.12487 1.58848 1.13431 0.87955 1.24745 0.96525 0.89408 0.97834 1.69903 1.18356 1.36298 1.22988 0.86146 0.81191 0.78621 0.79677 1.18639 1.19618 1.19620 1.21035 1.00618 0.90512 1.06296 1.18213 0.88199 0.86075 1.02007 1.86145 1.18745 1.28288 1.89099 1.23095 0.78535 1.03796 1.01648 0.88424 0.92856 0.92689 0.84853 0.85274 0.90241 0.90369 0.90693 0.92052 0.76804 0.89966 0.84442 0.92230 0.92702 0.88311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 50. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.31 -3.83 10.28 -34.23 -0.35 -4.18 16 3 C 0.09 1.17 6.70 -39.12 -0.26 0.90 16 4 C -0.17 -1.89 9.04 -39.46 -0.36 -2.25 16 5 C -0.11 -1.28 9.69 -39.58 -0.38 -1.66 16 6 C -0.07 -0.88 5.13 -104.62 -0.54 -1.42 16 7 C -0.09 -1.08 5.48 -27.88 -0.15 -1.23 16 8 C 0.13 2.20 6.20 -4.04 -0.03 2.17 16 9 N -1.14 -21.86 6.00 -10.62 -0.06 -21.93 16 10 S 2.72 71.32 5.02 -107.50 -0.54 70.78 16 11 O -1.01 -29.32 18.02 -57.17 -1.03 -30.35 16 12 O -1.01 -29.23 17.49 -57.17 -1.00 -30.23 16 13 C -1.02 -28.00 9.72 30.60 0.30 -27.70 16 14 H 0.10 2.57 7.81 -52.49 -0.41 2.16 16 15 C 0.13 3.71 5.46 -17.82 -0.10 3.61 16 16 N -0.85 -24.93 13.19 55.43 0.73 -24.20 16 17 Si 0.92 20.61 29.54 -169.99 -5.02 15.59 16 18 H -0.26 -5.66 7.11 56.52 0.40 -5.26 16 19 H -0.27 -5.86 7.11 56.52 0.40 -5.45 16 20 H -0.27 -5.87 7.11 56.52 0.40 -5.46 16 21 C -0.17 -2.09 8.69 -39.46 -0.34 -2.44 16 22 C 0.10 1.35 6.70 -39.12 -0.26 1.09 16 23 O -0.31 -4.07 10.28 -34.24 -0.35 -4.42 16 24 C 0.02 0.23 9.81 101.05 0.99 1.22 16 25 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.05 0.34 7.67 -51.93 -0.40 -0.06 16 27 H 0.05 0.38 7.65 -51.93 -0.40 -0.02 16 28 H 0.13 1.13 6.30 -52.49 -0.33 0.80 16 29 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 30 H 0.08 0.86 8.08 -51.93 -0.42 0.44 16 31 H 0.08 0.91 8.08 -51.93 -0.42 0.49 16 32 H 0.07 1.34 7.75 -51.93 -0.40 0.94 16 33 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.40 6.51 8.65 -34.48 -0.30 6.22 16 35 H 0.29 7.66 8.31 -40.82 -0.34 7.32 16 36 H 0.14 1.54 6.30 -52.48 -0.33 1.21 16 37 H 0.06 0.55 7.66 -51.93 -0.40 0.15 16 38 H 0.05 0.44 7.66 -51.93 -0.40 0.04 16 39 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 348.01 15.07 5.24 5.24 Total: -1.00 -37.33 348.01 -7.55 -44.88 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -5.03 Total: 5.31 kcal Atomic # 6 Polarization: -26.36 SS G_CDS: -0.14 Total: -26.50 kcal Atomic # 7 Polarization: -46.79 SS G_CDS: 0.67 Total: -46.13 kcal Atomic # 8 Polarization: -66.45 SS G_CDS: -2.73 Total: -69.18 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Atomic # 16 Polarization: 71.32 SS G_CDS: -0.54 Total: 70.78 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -37.33 -7.55 -44.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044509368.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.969 kcal (2) G-P(sol) polarization free energy of solvation -37.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.52 seconds