Wall clock time and date at job start Tue Mar 31 2020 11:24:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35995 * 116.99655 * 2 1 4 4 C 1.38564 * 120.07625 * 359.72270 * 3 2 1 5 5 C 1.38245 * 119.99792 * 179.79495 * 4 3 2 6 6 C 1.38247 * 120.14929 * 0.45790 * 5 4 3 7 7 C 1.50701 * 119.93158 * 179.77035 * 6 5 4 8 8 C 1.53003 * 109.47173 * 270.02640 * 7 6 5 9 9 N 1.46491 * 109.47109 * 179.97438 * 8 7 6 10 10 S 1.65609 * 119.99887 * 164.99711 * 9 8 7 11 11 O 1.42104 * 106.40009 * 178.54350 * 10 9 8 12 12 O 1.42095 * 106.40018 * 311.46473 * 10 9 8 13 13 C 1.76199 * 107.21361 * 65.00641 * 10 9 8 14 14 H 1.07994 * 120.00267 * 359.97438 * 13 10 9 15 15 C 1.37876 * 119.99530 * 180.02562 * 13 10 9 16 16 N 1.31516 * 120.00589 * 359.97438 * 15 13 10 17 17 Si 1.86809 * 119.99851 * 179.97438 * 15 13 10 18 18 H 1.48494 * 109.47070 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47193 * 119.99470 * 17 15 13 20 20 H 1.48499 * 109.46799 * 239.99916 * 17 15 13 21 21 C 1.38241 * 120.14550 * 359.79719 * 6 5 4 22 22 C 1.38563 * 119.99940 * 359.97369 * 21 6 5 23 23 O 1.35997 * 120.07546 * 180.02562 * 22 21 6 24 24 C 1.42902 * 116.99582 * 359.97438 * 23 22 21 25 25 H 1.08996 * 109.46732 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47144 * 300.00182 * 1 2 3 27 27 H 1.08998 * 109.47043 * 59.99780 * 1 2 3 28 28 H 1.07997 * 120.00260 * 0.02562 * 4 3 2 29 29 H 1.07998 * 119.92433 * 180.21315 * 5 4 3 30 30 H 1.09000 * 109.46763 * 30.02282 * 7 6 5 31 31 H 1.08993 * 109.47638 * 150.02455 * 7 6 5 32 32 H 1.08995 * 109.46896 * 300.00239 * 8 7 6 33 33 H 1.09001 * 109.46846 * 59.99702 * 8 7 6 34 34 H 0.97003 * 120.00482 * 345.00425 * 9 8 7 35 35 H 0.97000 * 120.00527 * 180.02562 * 16 15 13 36 36 H 1.08004 * 120.00331 * 179.97438 * 21 6 5 37 37 H 1.08998 * 109.47287 * 299.99772 * 24 23 22 38 38 H 1.09001 * 109.47198 * 60.00379 * 24 23 22 39 39 H 1.09007 * 109.46665 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2118 0.0000 4 6 1.2932 2.3748 -0.0058 5 6 1.9224 3.6058 -0.0015 6 6 3.3028 3.6799 -0.0010 7 6 3.9836 5.0244 -0.0015 8 6 4.2140 5.4788 -1.4442 9 7 4.8753 6.7860 -1.4447 10 16 5.5805 7.3567 -2.8303 11 8 6.0967 8.6431 -2.5172 12 8 6.3832 6.2992 -3.3367 13 6 4.2920 7.6100 -4.0051 14 1 3.2683 7.3915 -3.7393 15 6 4.5909 8.0861 -5.2640 16 7 5.8376 8.3517 -5.5879 17 14 3.2249 8.3541 -6.5099 18 1 1.9217 7.9821 -5.9031 19 1 3.1945 9.7834 -6.9114 20 1 3.4729 7.5091 -7.7056 21 6 4.0602 2.5235 -0.0005 22 6 3.4359 1.2864 0.0000 23 8 4.1795 0.1478 0.0010 24 6 5.6003 0.3008 0.0009 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 0.2146 2.3197 -0.0099 29 1 1.3341 4.5115 -0.0026 30 1 3.3537 5.7508 0.5120 31 1 4.9417 4.9468 0.5123 32 1 4.8438 4.7524 -1.9577 33 1 3.2559 5.5565 -1.9581 34 1 4.9002 7.3174 -0.6336 35 1 6.0478 8.6871 -6.4735 36 1 5.1386 2.5841 -0.0005 37 1 5.9066 0.8498 -0.8896 38 1 5.9065 0.8513 0.8904 39 1 6.0716 -0.6821 0.0022 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044509368.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:51 Heat of formation + Delta-G solvation = -175.973740 kcal Electronic energy + Delta-G solvation = -23846.622212 eV Core-core repulsion = 20073.160939 eV Total energy + Delta-G solvation = -3773.461273 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.102 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.52926 -39.38162 -38.54762 -37.38589 -36.32866 -36.11515 -35.15397 -32.64549 -31.28101 -29.37565 -28.24443 -28.06190 -27.44548 -24.18061 -23.12380 -22.07672 -20.97683 -19.50632 -19.21935 -18.24232 -17.87651 -17.71249 -17.18527 -16.97281 -16.71240 -16.11953 -16.01017 -15.67683 -15.52531 -15.38546 -15.25384 -14.94784 -14.08433 -13.97976 -13.72168 -13.34561 -13.21252 -13.03733 -13.01779 -12.89334 -12.52334 -12.45668 -12.42107 -12.28590 -12.26323 -12.05484 -11.97373 -11.90444 -11.61834 -11.25491 -10.97596 -10.17185 -9.65738 -8.75099 -8.73011 -7.46725 0.26378 0.37757 0.48322 1.34126 1.35374 1.52651 2.21858 2.37486 2.39507 2.59223 2.70308 3.02190 3.71998 3.79176 3.89424 4.10248 4.14963 4.17388 4.27236 4.39207 4.41782 4.44476 4.46736 4.49049 4.56523 4.64969 4.73370 4.76428 4.77320 4.92870 5.00078 5.20103 5.23731 5.31097 5.37634 5.66157 5.74964 5.91881 6.12397 6.45640 6.63357 6.80167 8.22281 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.016267 B = 0.003283 C = 0.003036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.829471 B = 8527.562532 C = 9219.978779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.333 6.333 3 C 0.076 3.924 4 C -0.168 4.168 5 C -0.111 4.111 6 C -0.084 4.084 7 C -0.074 4.074 8 C 0.125 3.875 9 N -1.120 6.120 10 S 2.721 3.279 11 O -1.045 7.045 12 O -1.045 7.045 13 C -1.040 5.040 14 H 0.121 0.879 15 C 0.069 3.931 16 N -0.895 5.895 17 Si 0.990 3.010 18 H -0.246 1.246 19 H -0.259 1.259 20 H -0.261 1.261 21 C -0.173 4.173 22 C 0.077 3.923 23 O -0.330 6.330 24 C 0.018 3.982 25 H 0.115 0.885 26 H 0.068 0.932 27 H 0.063 0.937 28 H 0.161 0.839 29 H 0.151 0.849 30 H 0.103 0.897 31 H 0.086 0.914 32 H 0.056 0.944 33 H 0.068 0.932 34 H 0.418 0.582 35 H 0.298 0.702 36 H 0.143 0.857 37 H 0.055 0.945 38 H 0.065 0.935 39 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.844 -14.172 12.939 22.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.248 6.248 3 C 0.031 3.969 4 C -0.186 4.186 5 C -0.130 4.130 6 C -0.085 4.085 7 C -0.113 4.113 8 C -0.001 4.001 9 N -0.880 5.880 10 S 2.822 3.178 11 O -1.035 7.035 12 O -1.034 7.034 13 C -1.174 5.174 14 H 0.139 0.861 15 C -0.144 4.144 16 N -0.526 5.526 17 Si 0.808 3.192 18 H -0.169 1.169 19 H -0.184 1.184 20 H -0.185 1.185 21 C -0.192 4.192 22 C 0.032 3.968 23 O -0.244 6.244 24 C -0.076 4.076 25 H 0.133 0.867 26 H 0.086 0.914 27 H 0.082 0.918 28 H 0.178 0.822 29 H 0.169 0.831 30 H 0.122 0.878 31 H 0.104 0.896 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.252 0.748 35 H 0.108 0.892 36 H 0.161 0.839 37 H 0.074 0.926 38 H 0.084 0.916 39 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -10.725 -14.487 12.567 21.974 hybrid contribution -0.589 0.636 -0.616 1.063 sum -11.314 -13.851 11.951 21.510 Atomic orbital electron populations 1.23340 0.76597 1.05416 1.02302 1.86122 1.23225 1.26176 1.89244 1.18549 0.89341 0.86023 1.03017 1.21333 1.01135 0.90695 1.05465 1.21110 0.93629 0.98203 1.00011 1.19584 0.93973 0.94119 1.00806 1.20717 1.02028 0.93605 0.94916 1.21246 0.97211 0.82960 0.98732 1.55314 1.75748 1.28830 1.28138 0.99819 0.74440 0.71178 0.72395 1.93313 1.81320 1.43478 1.85367 1.93301 1.70614 1.59157 1.80363 1.30952 1.13547 1.58735 1.14130 0.86061 1.26015 0.99293 0.88686 1.00365 1.69995 1.20853 1.37595 1.24197 0.85111 0.78001 0.79257 0.76856 1.16854 1.18378 1.18540 1.21181 1.01127 0.90596 1.06295 1.18517 0.88930 0.86389 1.03003 1.86107 1.20323 1.28721 1.89289 1.23308 0.77084 1.05257 1.01970 0.86666 0.91371 0.91822 0.82170 0.83107 0.87827 0.89558 0.92573 0.91397 0.74804 0.89163 0.83897 0.92630 0.91609 0.86282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 113.37 1.11 1.35 16 2 O -0.33 -7.96 10.28 -79.62 -0.82 -8.78 16 3 C 0.08 1.90 6.70 22.57 0.15 2.05 16 4 C -0.17 -3.36 9.04 22.35 0.20 -3.16 16 5 C -0.11 -2.28 9.69 22.27 0.22 -2.06 16 6 C -0.08 -1.95 5.13 -19.86 -0.10 -2.05 16 7 C -0.07 -1.69 5.48 29.85 0.16 -1.53 16 8 C 0.12 4.00 6.20 86.38 0.54 4.53 16 9 N -1.12 -42.06 6.00 -187.51 -1.12 -43.19 16 10 S 2.72 144.49 5.02 -56.49 -0.28 144.21 16 11 O -1.04 -61.90 18.02 -128.00 -2.31 -64.21 16 12 O -1.04 -62.14 17.49 -128.00 -2.24 -64.38 16 13 C -1.04 -56.68 9.72 67.73 0.66 -56.02 16 14 H 0.12 5.91 7.81 -2.91 -0.02 5.88 16 15 C 0.07 3.83 5.46 84.65 0.46 4.29 16 16 N -0.89 -53.46 13.19 21.45 0.28 -53.17 16 17 Si 0.99 41.06 29.54 68.60 2.03 43.09 16 18 H -0.25 -9.42 7.11 99.48 0.71 -8.71 16 19 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 20 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 21 C -0.17 -4.29 8.69 22.35 0.19 -4.09 16 22 C 0.08 2.06 6.70 22.57 0.15 2.21 16 23 O -0.33 -8.76 10.28 -79.65 -0.82 -9.58 16 24 C 0.02 0.34 9.81 113.37 1.11 1.45 16 25 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 26 H 0.07 0.70 7.67 -2.39 -0.02 0.68 16 27 H 0.06 0.73 7.65 -2.39 -0.02 0.71 16 28 H 0.16 2.20 6.30 -2.91 -0.02 2.18 16 29 H 0.15 2.37 8.06 -2.91 -0.02 2.34 16 30 H 0.10 1.88 8.08 -2.39 -0.02 1.87 16 31 H 0.09 1.84 8.08 -2.39 -0.02 1.82 16 32 H 0.06 2.01 7.75 -2.39 -0.02 1.99 16 33 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.42 12.95 8.65 -96.74 -0.84 12.11 16 35 H 0.30 15.96 8.31 -92.71 -0.77 15.19 16 36 H 0.14 3.19 6.30 -2.91 -0.02 3.17 16 37 H 0.06 1.05 7.66 -2.39 -0.02 1.03 16 38 H 0.07 1.04 7.66 -2.39 -0.02 1.02 16 39 H 0.12 1.62 8.14 -2.38 -0.02 1.60 16 Total: -1.00 -81.93 348.01 -0.18 -82.11 By element: Atomic # 1 Polarization: 26.69 SS G_CDS: 0.24 Total: 26.93 kcal Atomic # 6 Polarization: -57.89 SS G_CDS: 4.86 Total: -53.03 kcal Atomic # 7 Polarization: -95.52 SS G_CDS: -0.84 Total: -96.36 kcal Atomic # 8 Polarization: -140.76 SS G_CDS: -6.18 Total: -146.94 kcal Atomic # 14 Polarization: 41.06 SS G_CDS: 2.03 Total: 43.09 kcal Atomic # 16 Polarization: 144.49 SS G_CDS: -0.28 Total: 144.21 kcal Total: -81.93 -0.18 -82.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044509368.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.861 kcal (2) G-P(sol) polarization free energy of solvation -81.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds