Wall clock time and date at job start Tue Mar 31 2020 11:15:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42903 * 109.46457 * 2 1 4 4 C 1.36099 * 116.99422 * 180.02562 * 3 2 1 5 5 C 1.38530 * 120.00040 * 0.02562 * 4 3 2 6 6 C 1.38212 * 120.06879 * 179.97438 * 5 4 3 7 7 C 1.38861 * 120.07425 * 359.97438 * 6 5 4 8 8 N 1.39913 * 120.00341 * 180.02562 * 7 6 5 9 9 S 1.65606 * 120.00012 * 45.00259 * 8 7 6 10 10 O 1.42101 * 106.40237 * 178.53756 * 9 8 7 11 11 O 1.42098 * 106.39816 * 311.45836 * 9 8 7 12 12 C 1.76203 * 107.21852 * 64.99876 * 9 8 7 13 13 H 1.07996 * 119.99665 * 359.97438 * 12 9 8 14 14 C 1.37874 * 119.99677 * 180.02562 * 12 9 8 15 15 N 1.31519 * 119.99788 * 180.02562 * 14 12 9 16 16 Si 1.86799 * 120.00479 * 359.97438 * 14 12 9 17 17 H 1.48502 * 109.46899 * 90.00283 * 16 14 12 18 18 H 1.48496 * 109.47442 * 210.00176 * 16 14 12 19 19 H 1.48501 * 109.46918 * 330.00628 * 16 14 12 20 20 C 1.38832 * 119.99528 * 0.02562 * 7 6 5 21 21 C 1.38518 * 119.92852 * 0.02562 * 20 7 6 22 22 O 1.35990 * 120.03393 * 180.27687 * 21 20 7 23 23 C 1.42893 * 116.99990 * 359.72096 * 22 21 20 24 24 C 1.53003 * 109.47097 * 180.02562 * 23 22 21 25 25 H 1.08996 * 109.46870 * 299.99677 * 1 2 3 26 26 H 1.08991 * 109.47300 * 60.00165 * 1 2 3 27 27 H 1.08999 * 109.46723 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46996 * 240.01043 * 2 1 3 29 29 H 1.08991 * 109.47300 * 119.99835 * 2 1 3 30 30 H 1.08001 * 119.96852 * 359.97438 * 5 4 3 31 31 H 1.08001 * 119.96264 * 180.02562 * 6 5 4 32 32 H 0.97006 * 120.00542 * 225.00027 * 8 7 6 33 33 H 0.96997 * 120.00236 * 180.02562 * 15 14 12 34 34 H 1.07999 * 120.03228 * 180.02562 * 20 7 6 35 35 H 1.08996 * 109.47328 * 299.99951 * 23 22 21 36 36 H 1.09001 * 109.47350 * 60.00319 * 23 22 21 37 37 H 1.09001 * 109.46851 * 59.99902 * 24 23 22 38 38 H 1.08996 * 109.46805 * 180.02562 * 24 23 22 39 39 H 1.08996 * 109.46900 * 300.00101 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.3555 1.5257 -0.0005 5 6 4.1994 0.4271 -0.0016 6 6 5.5698 0.6066 -0.0027 7 6 6.1037 1.8884 -0.0033 8 7 7.4912 2.0684 -0.0049 9 16 8.4416 1.1693 -1.0202 10 8 9.7777 1.6054 -0.8103 11 8 8.0312 -0.1819 -0.8622 12 6 8.0221 1.6273 -2.6692 13 1 7.2623 2.3742 -2.8454 14 6 8.6631 1.0312 -3.7344 15 7 8.3503 1.3733 -4.9652 16 14 9.9768 -0.2614 -3.4296 17 1 9.3465 -1.6050 -3.3774 18 1 10.9727 -0.2242 -4.5305 19 1 10.6554 0.0175 -2.1385 20 6 5.2607 2.9915 -0.0022 21 6 3.8872 2.8116 0.0000 22 8 3.0594 3.8905 -0.0047 23 6 3.6746 5.1802 -0.0055 24 6 2.5922 6.2615 -0.0103 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5137 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 3.7861 -0.5707 -0.0016 31 1 6.2261 -0.2511 -0.0039 32 1 7.8966 2.7199 0.5887 33 1 8.8010 0.9537 -5.7146 34 1 5.6753 3.9887 -0.0031 35 1 4.2922 5.2887 0.8860 36 1 4.2974 5.2851 -0.8939 37 1 1.9698 6.1564 0.8783 38 1 3.0616 7.2453 -0.0114 39 1 1.9743 6.1531 -0.9016 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044509439.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:16 Heat of formation + Delta-G solvation = -130.266026 kcal Electronic energy + Delta-G solvation = -24621.823215 eV Core-core repulsion = 20850.343977 eV Total energy + Delta-G solvation = -3771.479238 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.102 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.35609 -38.43585 -37.45927 -35.74354 -34.60329 -33.85939 -33.06921 -31.80213 -31.41542 -29.69566 -27.55594 -26.45904 -24.39099 -23.10315 -22.03896 -21.05922 -19.30093 -18.54732 -17.74274 -17.35064 -16.97982 -16.23111 -16.06011 -15.70206 -15.66828 -15.12199 -14.50262 -14.09246 -13.88296 -13.55455 -13.45313 -13.12686 -12.93503 -12.73761 -12.62942 -12.60548 -12.48445 -11.96495 -11.91404 -11.56448 -11.40486 -11.15845 -11.02582 -10.97500 -10.72182 -10.66858 -10.63643 -10.32640 -9.92124 -9.71787 -9.25595 -9.02397 -8.33233 -7.28561 -6.84081 -5.39423 1.49904 1.67073 1.98722 3.03412 3.13805 3.21708 3.31880 3.34825 3.90221 3.97904 4.11109 4.55217 4.88899 4.92127 4.93582 4.98671 5.11594 5.12993 5.22462 5.25000 5.33785 5.47476 5.54892 5.58720 5.63215 5.70819 5.75528 5.76828 5.94268 5.98100 5.98615 6.08940 6.47179 6.65729 6.87205 6.98319 7.26022 7.43363 7.57085 7.83645 8.18162 8.65240 10.28225 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.014555 B = 0.004457 C = 0.003980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.253287 B = 6280.648953 C = 7033.693774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.052 3.948 3 O -0.309 6.309 4 C 0.079 3.921 5 C -0.149 4.149 6 C -0.142 4.142 7 C 0.178 3.822 8 N -1.061 6.061 9 S 2.669 3.331 10 O -1.000 7.000 11 O -1.001 7.001 12 C -1.010 5.010 13 H 0.123 0.877 14 C 0.154 3.846 15 N -0.819 5.819 16 Si 0.802 3.198 17 H -0.245 1.245 18 H -0.254 1.254 19 H -0.221 1.221 20 C -0.193 4.193 21 C 0.115 3.885 22 O -0.306 6.306 23 C 0.050 3.950 24 C -0.149 4.149 25 H 0.063 0.937 26 H 0.065 0.935 27 H 0.074 0.926 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.137 0.863 31 H 0.165 0.835 32 H 0.414 0.586 33 H 0.282 0.718 34 H 0.137 0.863 35 H 0.060 0.940 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.075 0.925 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.218 2.720 10.101 16.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.024 4.024 3 O -0.223 6.223 4 C 0.033 3.967 5 C -0.168 4.168 6 C -0.163 4.163 7 C 0.081 3.919 8 N -0.807 5.807 9 S 2.772 3.228 10 O -0.990 6.990 11 O -0.991 6.991 12 C -1.145 5.145 13 H 0.141 0.859 14 C -0.066 4.066 15 N -0.448 5.448 16 Si 0.622 3.378 17 H -0.168 1.168 18 H -0.178 1.178 19 H -0.143 1.143 20 C -0.215 4.215 21 C 0.069 3.931 22 O -0.220 6.220 23 C -0.025 4.025 24 C -0.206 4.206 25 H 0.083 0.917 26 H 0.084 0.916 27 H 0.093 0.907 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.155 0.845 31 H 0.183 0.817 32 H 0.248 0.752 33 H 0.092 0.908 34 H 0.155 0.845 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.094 0.906 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -11.930 2.118 10.094 15.770 hybrid contribution 0.764 0.105 -0.470 0.903 sum -11.166 2.223 9.624 14.908 Atomic orbital electron populations 1.21740 0.93113 1.02454 1.03342 1.22747 0.95585 0.82671 1.01381 1.86137 1.18296 1.28272 1.89609 1.18116 0.82879 0.91038 1.04676 1.20909 0.93298 0.97347 1.05270 1.21740 0.95491 0.97541 1.01552 1.16997 0.82655 0.92706 0.99526 1.53458 1.13621 1.57924 1.55704 1.01711 0.71971 0.73089 0.76022 1.93495 1.35581 1.82386 1.87588 1.93350 1.82310 1.35779 1.87669 1.30296 1.35638 1.37261 1.11329 0.85905 1.24410 0.94103 0.93800 0.94273 1.69985 1.38040 1.38067 0.98707 0.87862 0.82982 0.83700 0.83298 1.16826 1.17790 1.14303 1.20972 0.91042 0.99623 1.09913 1.17851 0.88274 0.85081 1.01903 1.86132 1.33961 1.12686 1.89215 1.22781 0.96694 0.81495 1.01537 1.21741 0.98907 0.96616 1.03352 0.91748 0.91612 0.90671 0.92005 0.92252 0.84513 0.81738 0.75159 0.90802 0.84494 0.92223 0.91801 0.91735 0.90595 0.91559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 10.28 37.16 0.38 -0.95 16 2 C 0.05 0.59 5.46 37.16 0.20 0.79 16 3 O -0.31 -4.77 9.92 -34.66 -0.34 -5.11 16 4 C 0.08 1.32 6.70 -39.14 -0.26 1.06 16 5 C -0.15 -2.45 9.03 -39.48 -0.36 -2.81 16 6 C -0.14 -2.69 9.18 -39.36 -0.36 -3.05 16 7 C 0.18 3.38 6.22 -83.72 -0.52 2.86 16 8 N -1.06 -20.54 5.78 32.43 0.19 -20.35 16 9 S 2.67 65.35 4.16 -107.50 -0.45 64.90 16 10 O -1.00 -26.14 16.02 -57.17 -0.92 -27.06 16 11 O -1.00 -25.38 13.75 -57.17 -0.79 -26.16 16 12 C -1.01 -28.11 10.22 30.60 0.31 -27.80 16 13 H 0.12 3.51 8.06 -52.49 -0.42 3.09 16 14 C 0.15 4.39 5.47 -17.82 -0.10 4.30 16 15 N -0.82 -23.56 13.96 55.43 0.77 -22.79 16 16 Si 0.80 20.23 26.54 -169.99 -4.51 15.72 16 17 H -0.24 -5.99 7.11 56.52 0.40 -5.59 16 18 H -0.25 -5.89 7.11 56.52 0.40 -5.49 16 19 H -0.22 -5.64 5.61 56.52 0.32 -5.33 16 20 C -0.19 -3.26 8.95 -39.26 -0.35 -3.61 16 21 C 0.11 1.95 6.70 -39.14 -0.26 1.69 16 22 O -0.31 -4.80 9.92 -34.32 -0.34 -5.14 16 23 C 0.05 0.60 5.46 37.16 0.20 0.80 16 24 C -0.15 -1.39 10.28 37.16 0.38 -1.01 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.68 7.66 -51.93 -0.40 0.28 16 29 H 0.06 0.60 7.66 -51.93 -0.40 0.20 16 30 H 0.14 1.84 6.29 -52.49 -0.33 1.51 16 31 H 0.17 3.29 5.57 -52.49 -0.29 3.00 16 32 H 0.41 6.55 8.96 -34.47 -0.31 6.24 16 33 H 0.28 7.32 8.31 -40.82 -0.34 6.98 16 34 H 0.14 1.98 6.30 -52.49 -0.33 1.65 16 35 H 0.06 0.63 7.67 -51.93 -0.40 0.23 16 36 H 0.06 0.76 7.65 -51.93 -0.40 0.37 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 336.79 15.07 5.08 5.08 Total: -1.00 -33.53 336.79 -7.07 -40.60 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -5.03 Total: 8.03 kcal Atomic # 6 Polarization: -26.99 SS G_CDS: -0.73 Total: -27.72 kcal Atomic # 7 Polarization: -44.10 SS G_CDS: 0.96 Total: -43.14 kcal Atomic # 8 Polarization: -61.08 SS G_CDS: -2.39 Total: -63.47 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -4.51 Total: 15.72 kcal Atomic # 16 Polarization: 65.35 SS G_CDS: -0.45 Total: 64.90 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.53 -7.07 -40.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044509439.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.663 kcal (2) G-P(sol) polarization free energy of solvation -33.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds