Wall clock time and date at job start Tue Mar 31 2020 11:15:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42903 * 109.46457 * 2 1 4 4 C 1.36099 * 116.99422 * 180.02562 * 3 2 1 5 5 C 1.38530 * 120.00040 * 0.02562 * 4 3 2 6 6 C 1.38212 * 120.06879 * 179.97438 * 5 4 3 7 7 C 1.38861 * 120.07425 * 359.97438 * 6 5 4 8 8 N 1.39913 * 120.00341 * 180.02562 * 7 6 5 9 9 S 1.65606 * 120.00012 * 45.00259 * 8 7 6 10 10 O 1.42101 * 106.40237 * 178.53756 * 9 8 7 11 11 O 1.42098 * 106.39816 * 311.45836 * 9 8 7 12 12 C 1.76203 * 107.21852 * 64.99876 * 9 8 7 13 13 H 1.07996 * 119.99665 * 359.97438 * 12 9 8 14 14 C 1.37874 * 119.99677 * 180.02562 * 12 9 8 15 15 N 1.31519 * 119.99788 * 180.02562 * 14 12 9 16 16 Si 1.86799 * 120.00479 * 359.97438 * 14 12 9 17 17 H 1.48502 * 109.46899 * 90.00283 * 16 14 12 18 18 H 1.48496 * 109.47442 * 210.00176 * 16 14 12 19 19 H 1.48501 * 109.46918 * 330.00628 * 16 14 12 20 20 C 1.38832 * 119.99528 * 0.02562 * 7 6 5 21 21 C 1.38518 * 119.92852 * 0.02562 * 20 7 6 22 22 O 1.35990 * 120.03393 * 180.27687 * 21 20 7 23 23 C 1.42893 * 116.99990 * 359.72096 * 22 21 20 24 24 C 1.53003 * 109.47097 * 180.02562 * 23 22 21 25 25 H 1.08996 * 109.46870 * 299.99677 * 1 2 3 26 26 H 1.08991 * 109.47300 * 60.00165 * 1 2 3 27 27 H 1.08999 * 109.46723 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46996 * 240.01043 * 2 1 3 29 29 H 1.08991 * 109.47300 * 119.99835 * 2 1 3 30 30 H 1.08001 * 119.96852 * 359.97438 * 5 4 3 31 31 H 1.08001 * 119.96264 * 180.02562 * 6 5 4 32 32 H 0.97006 * 120.00542 * 225.00027 * 8 7 6 33 33 H 0.96997 * 120.00236 * 180.02562 * 15 14 12 34 34 H 1.07999 * 120.03228 * 180.02562 * 20 7 6 35 35 H 1.08996 * 109.47328 * 299.99951 * 23 22 21 36 36 H 1.09001 * 109.47350 * 60.00319 * 23 22 21 37 37 H 1.09001 * 109.46851 * 59.99902 * 24 23 22 38 38 H 1.08996 * 109.46805 * 180.02562 * 24 23 22 39 39 H 1.08996 * 109.46900 * 300.00101 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.3555 1.5257 -0.0005 5 6 4.1994 0.4271 -0.0016 6 6 5.5698 0.6066 -0.0027 7 6 6.1037 1.8884 -0.0033 8 7 7.4912 2.0684 -0.0049 9 16 8.4416 1.1693 -1.0202 10 8 9.7777 1.6054 -0.8103 11 8 8.0312 -0.1819 -0.8622 12 6 8.0221 1.6273 -2.6692 13 1 7.2623 2.3742 -2.8454 14 6 8.6631 1.0312 -3.7344 15 7 8.3503 1.3733 -4.9652 16 14 9.9768 -0.2614 -3.4296 17 1 9.3465 -1.6050 -3.3774 18 1 10.9727 -0.2242 -4.5305 19 1 10.6554 0.0175 -2.1385 20 6 5.2607 2.9915 -0.0022 21 6 3.8872 2.8116 0.0000 22 8 3.0594 3.8905 -0.0047 23 6 3.6746 5.1802 -0.0055 24 6 2.5922 6.2615 -0.0103 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5137 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 3.7861 -0.5707 -0.0016 31 1 6.2261 -0.2511 -0.0039 32 1 7.8966 2.7199 0.5887 33 1 8.8010 0.9537 -5.7146 34 1 5.6753 3.9887 -0.0031 35 1 4.2922 5.2887 0.8860 36 1 4.2974 5.2851 -0.8939 37 1 1.9698 6.1564 0.8783 38 1 3.0616 7.2453 -0.0114 39 1 1.9743 6.1531 -0.9016 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044509439.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:13 Heat of formation + Delta-G solvation = -154.804512 kcal Electronic energy + Delta-G solvation = -24622.887284 eV Core-core repulsion = 20850.343977 eV Total energy + Delta-G solvation = -3772.543307 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.102 amu Computer time = 3.57 seconds Orbital eigenvalues (eV) -41.60653 -39.56794 -38.82122 -37.71157 -36.61578 -35.31891 -35.13147 -32.80324 -32.28181 -30.97960 -28.88730 -28.57927 -25.47286 -23.97810 -23.41439 -22.19071 -21.18010 -19.98721 -19.38397 -18.88138 -18.70750 -17.61105 -17.32000 -17.07449 -16.89901 -16.66478 -16.02380 -15.75604 -15.49259 -15.04032 -14.96329 -14.56277 -14.32563 -14.05986 -13.62468 -13.52442 -13.47549 -13.39475 -13.24947 -13.15304 -13.00248 -12.73311 -12.67802 -12.42712 -12.15261 -12.01696 -11.91319 -11.67417 -11.57068 -11.35177 -11.34641 -10.88624 -9.66137 -8.97818 -8.63397 -7.55964 -0.14680 0.26430 0.43871 1.05227 1.14962 1.20803 1.88041 2.20175 2.25409 2.34862 2.42274 2.64425 3.17889 3.76903 3.90176 4.05603 4.08192 4.11492 4.12629 4.19229 4.25476 4.27483 4.39789 4.41619 4.44765 4.59410 4.86913 4.89616 4.97251 5.00231 5.10416 5.24328 5.24960 5.32826 5.34664 5.42084 5.62995 5.98685 6.11714 6.17779 6.50514 6.62002 8.20164 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.014555 B = 0.004457 C = 0.003980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.253287 B = 6280.648953 C = 7033.693774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.038 3.962 3 O -0.321 6.321 4 C 0.077 3.923 5 C -0.146 4.146 6 C -0.163 4.163 7 C 0.152 3.848 8 N -1.047 6.047 9 S 2.696 3.304 10 O -1.017 7.017 11 O -1.010 7.010 12 C -1.035 5.035 13 H 0.101 0.899 14 C 0.109 3.891 15 N -0.852 5.852 16 Si 0.827 3.173 17 H -0.235 1.235 18 H -0.220 1.220 19 H -0.227 1.227 20 C -0.190 4.190 21 C 0.108 3.892 22 O -0.317 6.317 23 C 0.038 3.962 24 C -0.144 4.144 25 H 0.065 0.935 26 H 0.059 0.941 27 H 0.101 0.899 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.164 0.836 31 H 0.151 0.849 32 H 0.430 0.570 33 H 0.292 0.708 34 H 0.158 0.842 35 H 0.076 0.924 36 H 0.061 0.939 37 H 0.067 0.933 38 H 0.100 0.900 39 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.005 2.594 10.994 17.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.037 4.037 3 O -0.236 6.236 4 C 0.031 3.969 5 C -0.165 4.165 6 C -0.184 4.184 7 C 0.055 3.945 8 N -0.798 5.798 9 S 2.797 3.203 10 O -1.008 7.008 11 O -1.000 7.000 12 C -1.168 5.168 13 H 0.119 0.881 14 C -0.108 4.108 15 N -0.482 5.482 16 Si 0.644 3.356 17 H -0.158 1.158 18 H -0.142 1.142 19 H -0.149 1.149 20 C -0.212 4.212 21 C 0.061 3.939 22 O -0.232 6.232 23 C -0.037 4.037 24 C -0.201 4.201 25 H 0.084 0.916 26 H 0.078 0.922 27 H 0.120 0.880 28 H 0.083 0.917 29 H 0.093 0.907 30 H 0.182 0.818 31 H 0.169 0.831 32 H 0.268 0.732 33 H 0.103 0.897 34 H 0.176 0.824 35 H 0.094 0.906 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.119 0.881 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -12.721 2.007 10.960 16.911 hybrid contribution 0.807 0.224 -0.696 1.089 sum -11.914 2.232 10.265 15.884 Atomic orbital electron populations 1.21771 0.91180 1.04124 1.03106 1.23133 0.97182 0.81037 1.02303 1.86144 1.17325 1.30867 1.89258 1.18320 0.83728 0.91180 1.03702 1.21127 0.92320 0.98744 1.04340 1.21762 0.96498 0.97164 1.02982 1.17182 0.82204 0.93527 1.01539 1.52867 1.13856 1.58101 1.54987 1.00783 0.71641 0.72985 0.74889 1.93463 1.36884 1.82803 1.87616 1.93340 1.82547 1.36555 1.87576 1.30827 1.35116 1.36828 1.14024 0.88051 1.25181 0.95816 0.95439 0.94340 1.70016 1.39355 1.39347 0.99523 0.87457 0.81908 0.82130 0.84126 1.15772 1.14241 1.14936 1.21122 0.90982 1.00050 1.09088 1.18061 0.88464 0.85896 1.01482 1.86138 1.34471 1.13601 1.88939 1.23136 0.97923 0.80470 1.02169 1.21771 0.98307 0.96788 1.03247 0.91615 0.92211 0.88029 0.91681 0.90667 0.81843 0.83105 0.73184 0.89744 0.82440 0.90628 0.92090 0.91346 0.88094 0.92140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 10.28 71.98 0.74 -1.53 16 2 C 0.04 0.80 5.46 71.98 0.39 1.19 16 3 O -0.32 -9.53 9.92 -80.70 -0.80 -10.33 16 4 C 0.08 2.52 6.70 22.56 0.15 2.67 16 5 C -0.15 -4.69 9.03 22.33 0.20 -4.49 16 6 C -0.16 -6.13 9.18 22.41 0.21 -5.93 16 7 C 0.15 5.72 6.22 38.14 0.24 5.95 16 8 N -1.05 -40.22 5.78 -51.30 -0.30 -40.51 16 9 S 2.70 131.80 4.16 -56.49 -0.24 131.56 16 10 O -1.02 -52.70 16.02 -128.00 -2.05 -54.75 16 11 O -1.01 -51.05 13.75 -128.00 -1.76 -52.81 16 12 C -1.04 -58.50 10.22 67.73 0.69 -57.81 16 13 H 0.10 5.99 8.06 -2.91 -0.02 5.97 16 14 C 0.11 6.26 5.47 84.65 0.46 6.72 16 15 N -0.85 -49.45 13.96 21.45 0.30 -49.15 16 16 Si 0.83 40.42 26.54 68.60 1.82 42.24 16 17 H -0.23 -11.01 7.11 99.48 0.71 -10.30 16 18 H -0.22 -9.51 7.11 99.48 0.71 -8.80 16 19 H -0.23 -11.29 5.61 99.48 0.56 -10.73 16 20 C -0.19 -6.30 8.95 22.48 0.20 -6.10 16 21 C 0.11 3.57 6.70 22.55 0.15 3.72 16 22 O -0.32 -9.63 9.92 -79.47 -0.79 -10.42 16 23 C 0.04 0.84 5.46 71.98 0.39 1.23 16 24 C -0.14 -2.41 10.28 71.98 0.74 -1.67 16 25 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.06 1.32 7.66 -2.39 -0.02 1.30 16 29 H 0.08 1.34 7.66 -2.39 -0.02 1.32 16 30 H 0.16 4.15 6.29 -2.91 -0.02 4.13 16 31 H 0.15 6.07 5.57 -2.91 -0.02 6.06 16 32 H 0.43 13.27 8.96 -96.74 -0.87 12.41 16 33 H 0.29 15.19 8.31 -92.71 -0.77 14.42 16 34 H 0.16 4.37 6.30 -2.91 -0.02 4.35 16 35 H 0.08 1.44 7.67 -2.39 -0.02 1.43 16 36 H 0.06 1.39 7.65 -2.39 -0.02 1.38 16 37 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.10 1.18 8.14 -2.39 -0.02 1.17 16 39 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -71.79 336.79 0.83 -70.96 By element: Atomic # 1 Polarization: 29.17 SS G_CDS: 0.07 Total: 29.24 kcal Atomic # 6 Polarization: -60.60 SS G_CDS: 4.57 Total: -56.03 kcal Atomic # 7 Polarization: -89.67 SS G_CDS: 0.00 Total: -89.66 kcal Atomic # 8 Polarization: -122.91 SS G_CDS: -5.40 Total: -128.31 kcal Atomic # 14 Polarization: 40.42 SS G_CDS: 1.82 Total: 42.24 kcal Atomic # 16 Polarization: 131.80 SS G_CDS: -0.24 Total: 131.56 kcal Total: -71.79 0.83 -70.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044509439.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.841 kcal (2) G-P(sol) polarization free energy of solvation -71.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.57 seconds