Wall clock time and date at job start Tue Mar 31 2020 10:37:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47446 * 2 1 4 4 C 1.53003 * 109.47072 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47072 * 179.97438 * 4 3 2 6 6 C 1.50700 * 109.47321 * 180.02562 * 5 4 3 7 7 N 1.29524 * 126.14454 * 90.02512 * 6 5 4 8 8 N 1.26249 * 116.57808 * 179.74061 * 7 6 5 9 9 C 1.29881 * 117.66246 * 0.02562 * 8 7 6 10 10 N 1.39081 * 125.65282 * 179.97438 * 9 8 7 11 11 C 1.34771 * 119.99664 * 0.02584 * 10 9 8 12 12 O 1.21280 * 120.00638 * 0.02562 * 11 10 9 13 13 C 1.50700 * 119.99937 * 179.97438 * 11 10 9 14 14 S 1.80999 * 109.47427 * 179.97438 * 13 11 10 15 15 C 1.76200 * 99.99977 * 180.02562 * 14 13 11 16 16 H 1.07997 * 120.00188 * 0.02562 * 15 14 13 17 17 C 1.38796 * 119.99883 * 180.02562 * 15 14 13 18 18 N 1.31629 * 120.00349 * 179.97438 * 17 15 14 19 19 Si 1.86807 * 120.00127 * 0.02562 * 17 15 14 20 20 H 1.48494 * 109.47034 * 89.99859 * 19 17 15 21 21 H 1.48496 * 109.47101 * 210.00459 * 19 17 15 22 22 H 1.48501 * 109.46670 * 329.99811 * 19 17 15 23 23 S 1.71312 * 108.69833 * 0.02562 * 9 8 7 24 24 H 1.08996 * 109.47559 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.46641 * 299.99504 * 1 2 3 26 26 H 1.09003 * 109.47318 * 59.98924 * 1 2 3 27 27 H 1.09005 * 109.46641 * 240.00496 * 2 1 3 28 28 H 1.09003 * 109.47318 * 120.01076 * 2 1 3 29 29 H 1.09005 * 109.46795 * 60.00591 * 3 2 1 30 30 H 1.08999 * 109.47301 * 300.00660 * 3 2 1 31 31 H 1.09005 * 109.46828 * 60.00611 * 4 3 2 32 32 H 1.08999 * 109.47597 * 300.00479 * 4 3 2 33 33 H 1.09005 * 109.46795 * 60.00591 * 5 4 3 34 34 H 1.08999 * 109.47301 * 300.00660 * 5 4 3 35 35 H 0.96997 * 119.99695 * 180.02562 * 10 9 8 36 36 H 1.09005 * 109.47025 * 300.00344 * 13 11 10 37 37 H 1.09006 * 109.47052 * 59.99745 * 13 11 10 38 38 H 0.96993 * 120.00336 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4423 0.0006 5 6 4.0802 2.8848 0.0000 6 6 5.5872 2.8847 0.0000 7 7 6.3512 2.8847 -1.0459 8 7 7.5961 2.8898 -0.8361 9 6 7.9995 2.8941 0.3984 10 7 9.3255 2.8994 0.8180 11 6 10.3200 2.9010 -0.0916 12 8 10.0587 2.8983 -1.2759 13 6 11.7568 2.9074 0.3629 14 16 12.8468 2.9074 -1.0821 15 6 14.4164 2.9144 -0.2814 16 1 14.4724 2.9168 0.7971 17 6 15.5808 2.9169 -1.0368 18 7 16.7533 2.9227 -0.4387 19 14 15.4839 2.9135 -2.9023 20 1 15.4538 4.3126 -3.3989 21 1 16.6713 2.2162 -3.4583 22 1 14.2496 2.2087 -3.3325 23 16 6.6277 2.8905 1.4245 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5140 -0.8899 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5140 0.8899 29 1 1.6768 1.9562 0.8901 30 1 1.6767 1.9563 -0.8899 31 1 3.9338 0.9284 -0.8892 32 1 3.9331 0.9286 0.8908 33 1 3.7166 3.3991 0.8896 34 1 3.7172 3.3982 -0.8904 35 1 9.5345 2.9020 1.7652 36 1 11.9449 3.7995 0.9604 37 1 11.9515 2.0195 0.9645 38 1 17.5670 2.9247 -0.9666 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000046025357.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:37:05 Heat of formation + Delta-G solvation = 10.636248 kcal Electronic energy + Delta-G solvation = -20035.233611 eV Core-core repulsion = 16744.909976 eV Total energy + Delta-G solvation = -3290.323635 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.082 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.40047 -39.57418 -36.87961 -35.27032 -33.50048 -32.50330 -30.76417 -29.42774 -27.43377 -25.71760 -25.31166 -23.01681 -21.88376 -21.43143 -20.10311 -19.08115 -17.98148 -17.38787 -16.44675 -16.25000 -16.13058 -15.13665 -15.04734 -14.92068 -14.35739 -14.11715 -13.85013 -13.75511 -13.72565 -13.36063 -12.85194 -12.66540 -12.53666 -12.23883 -11.53227 -11.45935 -11.40413 -11.33827 -11.14006 -11.04934 -10.94262 -10.75562 -10.67070 -10.34905 -9.90691 -9.79176 -9.65119 -9.06320 -8.83904 -8.61019 -7.01868 -6.34916 -4.08676 0.30386 0.37222 1.00698 2.37728 2.42885 2.87912 2.96819 3.30044 3.46897 3.47997 3.89257 4.26066 4.32452 4.39133 4.46609 4.59736 4.69840 4.80976 4.91397 4.96369 5.04190 5.12760 5.21688 5.29425 5.32861 5.41821 5.47655 5.55108 5.58471 5.66347 5.76757 5.79296 5.87854 5.91335 5.95009 6.87649 7.87654 8.02128 8.34741 8.59128 9.10758 10.74006 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.037790 B = 0.002104 C = 0.002051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.755019 B =13307.371871 C =13647.110910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.127 4.127 3 C -0.119 4.119 4 C -0.117 4.117 5 C -0.033 4.033 6 C 0.001 3.999 7 N -0.223 5.223 8 N -0.273 5.273 9 C 0.243 3.757 10 N -0.630 5.630 11 C 0.521 3.479 12 O -0.443 6.443 13 C -0.121 4.121 14 S -0.133 6.133 15 C -0.525 4.525 16 H 0.090 0.910 17 C 0.098 3.902 18 N -0.877 5.877 19 Si 0.855 3.145 20 H -0.266 1.266 21 H -0.273 1.273 22 H -0.235 1.235 23 S 0.090 5.910 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.089 0.911 34 H 0.100 0.900 35 H 0.425 0.575 36 H 0.105 0.895 37 H 0.105 0.895 38 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.919 -2.176 8.210 31.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.164 4.164 3 C -0.156 4.156 4 C -0.156 4.156 5 C -0.075 4.075 6 C -0.281 4.281 7 N -0.058 5.058 8 N -0.117 5.117 9 C -0.127 4.127 10 N -0.284 5.284 11 C 0.304 3.696 12 O -0.307 6.307 13 C -0.272 4.272 14 S 0.093 5.907 15 C -0.672 4.672 16 H 0.108 0.892 17 C -0.111 4.111 18 N -0.514 5.514 19 Si 0.680 3.320 20 H -0.191 1.191 21 H -0.198 1.198 22 H -0.159 1.159 23 S 0.329 5.671 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.107 0.893 34 H 0.118 0.882 35 H 0.263 0.737 36 H 0.123 0.877 37 H 0.123 0.877 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -29.875 -2.173 5.857 30.521 hybrid contribution 0.894 0.049 1.237 1.527 sum -28.981 -2.124 7.094 29.912 Atomic orbital electron populations 1.21778 0.95847 1.01636 1.01798 1.21537 0.95864 0.96775 1.02248 1.21610 0.94415 0.97171 1.02429 1.21654 0.95798 0.94896 1.03255 1.20199 0.83527 0.99043 1.04692 1.29878 1.02387 1.07472 0.88408 1.71438 0.96214 1.12283 1.25913 1.71567 1.05771 1.19899 1.14465 1.26023 0.92294 1.01555 0.92814 1.43328 1.00104 1.73153 1.11800 1.20853 0.86520 0.76031 0.86161 1.90862 1.82950 1.41249 1.15664 1.23284 0.91697 1.06556 1.05631 1.84945 1.00701 1.97461 1.07543 1.22277 0.89060 1.59334 0.96555 0.89191 1.24689 0.94198 0.93024 0.99213 1.69925 0.97365 1.47648 1.36422 0.86761 0.80143 0.80065 0.85071 1.19102 1.19783 1.15883 1.84673 0.98447 1.72042 1.11899 0.92810 0.92775 0.92710 0.91870 0.91987 0.91732 0.91532 0.90939 0.91519 0.89296 0.88154 0.73692 0.87687 0.87653 0.91825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 9.91 37.16 0.37 -0.34 16 2 C -0.13 -0.65 5.93 -26.73 -0.16 -0.81 16 3 C -0.12 -0.58 5.21 -26.73 -0.14 -0.72 16 4 C -0.12 -0.72 5.20 -26.73 -0.14 -0.86 16 5 C -0.03 -0.22 5.84 -27.88 -0.16 -0.38 16 6 C 0.00 0.01 7.05 -13.25 -0.09 -0.08 16 7 N -0.22 -3.41 11.65 33.58 0.39 -3.02 16 8 N -0.27 -4.82 9.74 29.97 0.29 -4.52 16 9 C 0.24 3.43 8.14 -87.06 -0.71 2.72 16 10 N -0.63 -8.26 5.41 -12.92 -0.07 -8.33 16 11 C 0.52 9.20 7.81 -10.99 -0.09 9.11 16 12 O -0.44 -9.87 14.54 5.56 0.08 -9.79 16 13 C -0.12 -2.19 6.16 36.01 0.22 -1.97 16 14 S -0.13 -3.28 18.55 -107.50 -1.99 -5.27 16 15 C -0.52 -14.73 10.04 30.94 0.31 -14.42 16 16 H 0.09 2.61 8.03 -52.49 -0.42 2.19 16 17 C 0.10 2.82 5.50 -17.43 -0.10 2.72 16 18 N -0.88 -26.04 13.97 55.49 0.78 -25.26 16 19 Si 0.85 21.56 27.74 -169.99 -4.72 16.84 16 20 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.23 -5.94 6.74 56.52 0.38 -5.56 16 23 S 0.09 0.85 23.31 -107.50 -2.51 -1.66 16 24 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 25 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 26 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 27 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.42 3.60 8.82 -40.82 -0.36 3.24 16 36 H 0.10 1.70 8.14 -51.91 -0.42 1.28 16 37 H 0.11 1.71 8.14 -51.91 -0.42 1.28 16 38 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 353.66 15.07 5.33 5.33 Total: -1.00 -35.73 353.66 -8.53 -44.26 By element: Atomic # 1 Polarization: 1.89 SS G_CDS: -5.43 Total: -3.54 kcal Atomic # 6 Polarization: -4.35 SS G_CDS: -0.68 Total: -5.03 kcal Atomic # 7 Polarization: -42.52 SS G_CDS: 1.39 Total: -41.13 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: 0.08 Total: -9.79 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.72 Total: 16.84 kcal Atomic # 16 Polarization: -2.43 SS G_CDS: -4.50 Total: -6.93 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -35.73 -8.53 -44.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000046025357.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.899 kcal (2) G-P(sol) polarization free energy of solvation -35.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds