Wall clock time and date at job start Tue Mar 31 2020 10:37:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47446 * 2 1 4 4 C 1.53003 * 109.47072 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47072 * 179.97438 * 4 3 2 6 6 C 1.50700 * 109.47321 * 180.02562 * 5 4 3 7 7 N 1.29524 * 126.14454 * 90.02512 * 6 5 4 8 8 N 1.26249 * 116.57808 * 179.74061 * 7 6 5 9 9 C 1.29881 * 117.66246 * 0.02562 * 8 7 6 10 10 N 1.39081 * 125.65282 * 179.97438 * 9 8 7 11 11 C 1.34771 * 119.99664 * 0.02584 * 10 9 8 12 12 O 1.21280 * 120.00638 * 0.02562 * 11 10 9 13 13 C 1.50700 * 119.99937 * 179.97438 * 11 10 9 14 14 S 1.80999 * 109.47427 * 179.97438 * 13 11 10 15 15 C 1.76200 * 99.99977 * 180.02562 * 14 13 11 16 16 H 1.07997 * 120.00188 * 0.02562 * 15 14 13 17 17 C 1.38796 * 119.99883 * 180.02562 * 15 14 13 18 18 N 1.31629 * 120.00349 * 179.97438 * 17 15 14 19 19 Si 1.86807 * 120.00127 * 0.02562 * 17 15 14 20 20 H 1.48494 * 109.47034 * 89.99859 * 19 17 15 21 21 H 1.48496 * 109.47101 * 210.00459 * 19 17 15 22 22 H 1.48501 * 109.46670 * 329.99811 * 19 17 15 23 23 S 1.71312 * 108.69833 * 0.02562 * 9 8 7 24 24 H 1.08996 * 109.47559 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.46641 * 299.99504 * 1 2 3 26 26 H 1.09003 * 109.47318 * 59.98924 * 1 2 3 27 27 H 1.09005 * 109.46641 * 240.00496 * 2 1 3 28 28 H 1.09003 * 109.47318 * 120.01076 * 2 1 3 29 29 H 1.09005 * 109.46795 * 60.00591 * 3 2 1 30 30 H 1.08999 * 109.47301 * 300.00660 * 3 2 1 31 31 H 1.09005 * 109.46828 * 60.00611 * 4 3 2 32 32 H 1.08999 * 109.47597 * 300.00479 * 4 3 2 33 33 H 1.09005 * 109.46795 * 60.00591 * 5 4 3 34 34 H 1.08999 * 109.47301 * 300.00660 * 5 4 3 35 35 H 0.96997 * 119.99695 * 180.02562 * 10 9 8 36 36 H 1.09005 * 109.47025 * 300.00344 * 13 11 10 37 37 H 1.09006 * 109.47052 * 59.99745 * 13 11 10 38 38 H 0.96993 * 120.00336 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4423 0.0006 5 6 4.0802 2.8848 0.0000 6 6 5.5872 2.8847 0.0000 7 7 6.3512 2.8847 -1.0459 8 7 7.5961 2.8898 -0.8361 9 6 7.9995 2.8941 0.3984 10 7 9.3255 2.8994 0.8180 11 6 10.3200 2.9010 -0.0916 12 8 10.0587 2.8983 -1.2759 13 6 11.7568 2.9074 0.3629 14 16 12.8468 2.9074 -1.0821 15 6 14.4164 2.9144 -0.2814 16 1 14.4724 2.9168 0.7971 17 6 15.5808 2.9169 -1.0368 18 7 16.7533 2.9227 -0.4387 19 14 15.4839 2.9135 -2.9023 20 1 15.4538 4.3126 -3.3989 21 1 16.6713 2.2162 -3.4583 22 1 14.2496 2.2087 -3.3325 23 16 6.6277 2.8905 1.4245 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5140 -0.8899 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5140 0.8899 29 1 1.6768 1.9562 0.8901 30 1 1.6767 1.9563 -0.8899 31 1 3.9338 0.9284 -0.8892 32 1 3.9331 0.9286 0.8908 33 1 3.7166 3.3991 0.8896 34 1 3.7172 3.3982 -0.8904 35 1 9.5345 2.9020 1.7652 36 1 11.9449 3.7995 0.9604 37 1 11.9515 2.0195 0.9645 38 1 17.5670 2.9247 -0.9666 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000046025357.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:37:05 Heat of formation + Delta-G solvation = -13.393604 kcal Electronic energy + Delta-G solvation = -20036.275623 eV Core-core repulsion = 16744.909976 eV Total energy + Delta-G solvation = -3291.365647 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.082 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.45681 -40.86883 -37.40459 -36.44287 -34.68732 -34.12975 -31.90964 -30.47789 -28.26089 -27.84378 -26.18146 -23.87552 -22.71133 -21.83705 -21.12862 -20.41421 -19.57488 -18.61260 -17.77008 -17.38740 -17.12995 -16.57796 -16.30717 -16.11147 -15.53587 -15.25736 -14.88602 -14.80186 -14.53239 -14.37519 -14.06440 -13.91146 -13.37869 -13.05840 -12.96644 -12.87196 -12.74795 -12.44814 -12.02996 -11.90439 -11.86755 -11.77009 -11.59702 -11.37569 -11.30832 -11.18989 -10.86754 -10.59506 -10.57243 -9.92059 -9.04042 -8.53189 -6.24764 -0.63570 -0.53671 0.09653 0.89794 1.19574 1.29779 1.40041 1.49138 1.70782 1.81771 2.22655 2.60834 2.85450 3.06165 3.41427 3.86489 3.89947 4.01050 4.10454 4.14729 4.33336 4.37719 4.39529 4.51021 4.71324 4.78781 4.83867 4.89038 5.00947 5.06609 5.14039 5.26046 5.37157 5.48226 5.55312 5.69461 5.84655 6.10879 6.75699 6.92423 7.61523 8.58738 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.037790 B = 0.002104 C = 0.002051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.755019 B =13307.371871 C =13647.110910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.129 4.129 3 C -0.113 4.113 4 C -0.112 4.112 5 C -0.035 4.035 6 C 0.008 3.992 7 N -0.271 5.271 8 N -0.326 5.326 9 C 0.205 3.795 10 N -0.610 5.610 11 C 0.530 3.470 12 O -0.497 6.497 13 C -0.104 4.104 14 S -0.177 6.177 15 C -0.526 4.526 16 H 0.070 0.930 17 C 0.050 3.950 18 N -0.913 5.913 19 Si 0.909 3.091 20 H -0.264 1.264 21 H -0.259 1.259 22 H -0.240 1.240 23 S 0.198 5.802 24 H 0.052 0.948 25 H 0.060 0.940 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.063 0.937 29 H 0.080 0.920 30 H 0.067 0.933 31 H 0.051 0.949 32 H 0.072 0.928 33 H 0.122 0.878 34 H 0.104 0.896 35 H 0.447 0.553 36 H 0.130 0.870 37 H 0.130 0.870 38 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.513 -1.987 10.076 34.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.167 4.167 3 C -0.151 4.151 4 C -0.152 4.152 5 C -0.076 4.076 6 C -0.274 4.274 7 N -0.106 5.106 8 N -0.170 5.170 9 C -0.165 4.165 10 N -0.266 5.266 11 C 0.314 3.686 12 O -0.366 6.366 13 C -0.255 4.255 14 S 0.050 5.950 15 C -0.674 4.674 16 H 0.088 0.912 17 C -0.156 4.156 18 N -0.551 5.551 19 Si 0.731 3.269 20 H -0.188 1.188 21 H -0.183 1.183 22 H -0.164 1.164 23 S 0.439 5.561 24 H 0.071 0.929 25 H 0.079 0.921 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.082 0.918 29 H 0.099 0.901 30 H 0.086 0.914 31 H 0.070 0.930 32 H 0.090 0.910 33 H 0.140 0.860 34 H 0.122 0.878 35 H 0.290 0.710 36 H 0.148 0.852 37 H 0.148 0.852 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -32.498 -1.986 7.786 33.477 hybrid contribution 1.428 -0.020 0.868 1.672 sum -31.070 -2.006 8.655 32.315 Atomic orbital electron populations 1.21776 0.95400 1.01747 1.02115 1.21554 0.96277 0.97003 1.01856 1.21574 0.93167 0.97069 1.03273 1.21611 0.96797 0.94236 1.02535 1.20490 0.80837 0.99781 1.06530 1.30711 1.04167 1.03761 0.88797 1.71413 0.95988 1.15270 1.27946 1.71507 1.07347 1.20941 1.17228 1.26203 0.93452 1.02889 0.93945 1.42803 0.99425 1.72252 1.12146 1.20588 0.86927 0.75252 0.85847 1.90853 1.83720 1.44143 1.17925 1.23228 0.90695 1.08972 1.02593 1.84954 1.00575 1.97652 1.11860 1.22416 0.90829 1.58311 0.95842 0.91202 1.25466 0.94085 0.92962 1.03093 1.69995 0.98085 1.48986 1.38039 0.85949 0.80258 0.80153 0.80533 1.18835 1.18296 1.16374 1.84252 0.94053 1.69653 1.08185 0.92873 0.92085 0.92747 0.92899 0.91828 0.90105 0.91446 0.93037 0.90952 0.85957 0.87807 0.71045 0.85215 0.85210 0.91340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.91 71.98 0.71 -0.45 16 2 C -0.13 -1.12 5.93 30.59 0.18 -0.94 16 3 C -0.11 -0.82 5.21 30.59 0.16 -0.66 16 4 C -0.11 -1.15 5.20 30.59 0.16 -0.99 16 5 C -0.03 -0.37 5.84 29.85 0.17 -0.19 16 6 C 0.01 0.16 7.05 88.45 0.62 0.78 16 7 N -0.27 -8.24 11.65 -47.67 -0.56 -8.79 16 8 N -0.33 -11.56 9.74 -59.09 -0.58 -12.14 16 9 C 0.21 5.51 8.14 179.10 1.46 6.97 16 10 N -0.61 -14.95 5.41 -313.17 -1.69 -16.65 16 11 C 0.53 18.34 7.81 87.66 0.68 19.03 16 12 O -0.50 -22.58 14.54 -3.03 -0.04 -22.62 16 13 C -0.10 -3.63 6.16 71.24 0.44 -3.19 16 14 S -0.18 -8.77 18.55 -56.49 -1.05 -9.82 16 15 C -0.53 -29.81 10.04 67.95 0.68 -29.13 16 16 H 0.07 4.10 8.03 -2.91 -0.02 4.08 16 17 C 0.05 2.88 5.50 84.86 0.47 3.35 16 18 N -0.91 -54.73 13.97 21.65 0.30 -54.43 16 19 Si 0.91 44.90 27.74 68.60 1.90 46.80 16 20 H -0.26 -12.79 7.11 99.48 0.71 -12.08 16 21 H -0.26 -12.01 7.11 99.48 0.71 -11.30 16 22 H -0.24 -11.95 6.74 99.48 0.67 -11.28 16 23 S 0.20 3.06 23.31 -56.49 -1.32 1.75 16 24 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 25 H 0.06 0.38 8.14 -2.38 -0.02 0.36 16 26 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 27 H 0.05 0.56 8.14 -2.38 -0.02 0.54 16 28 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.08 0.36 8.14 -2.38 -0.02 0.34 16 30 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 32 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.12 0.53 8.14 -2.38 -0.02 0.51 16 34 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.45 6.27 8.82 -92.71 -0.82 5.45 16 36 H 0.13 3.93 8.14 -2.39 -0.02 3.91 16 37 H 0.13 3.94 8.14 -2.39 -0.02 3.92 16 38 H 0.28 15.41 8.31 -92.71 -0.77 14.64 16 Total: -1.00 -80.93 353.66 2.93 -77.99 By element: Atomic # 1 Polarization: 3.12 SS G_CDS: 0.22 Total: 3.34 kcal Atomic # 6 Polarization: -11.18 SS G_CDS: 5.74 Total: -5.43 kcal Atomic # 7 Polarization: -89.48 SS G_CDS: -2.52 Total: -92.00 kcal Atomic # 8 Polarization: -22.58 SS G_CDS: -0.04 Total: -22.62 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 1.90 Total: 46.80 kcal Atomic # 16 Polarization: -5.71 SS G_CDS: -2.36 Total: -8.07 kcal Total: -80.93 2.93 -77.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000046025357.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.598 kcal (2) G-P(sol) polarization free energy of solvation -80.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds