Wall clock time and date at job start Tue Mar 31 2020 11:14:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 N 1.46504 * 109.47389 * 2 1
4 4 C 1.36939 * 119.99565 * 273.62184 * 3 2 1
5 5 H 1.08000 * 119.99596 * 137.76353 * 4 3 2
6 6 C 1.38810 * 120.00122 * 317.77089 * 4 3 2
7 7 N 1.31617 * 119.99876 * 157.80311 * 6 4 3
8 8 Si 1.86800 * 120.00060 * 337.80237 * 6 4 3
9 9 H 1.48496 * 109.47386 * 95.57923 * 8 6 4
10 10 H 1.48500 * 109.46924 * 215.57978 * 8 6 4
11 11 H 1.48503 * 109.46981 * 335.57875 * 8 6 4
12 12 S 1.65596 * 120.00273 * 93.62244 * 3 2 1
13 13 O 1.42099 * 106.40313 * 156.45959 * 12 3 2
14 14 O 1.42103 * 106.40187 * 23.54116 * 12 3 2
15 15 C 1.76203 * 107.21689 * 269.99983 * 12 3 2
16 16 C 1.38247 * 119.92861 * 270.02034 * 15 12 3
17 17 C 1.38239 * 120.15110 * 179.76825 * 16 15 12
18 18 C 1.38570 * 119.99551 * 0.46801 * 17 16 15
19 19 O 1.35991 * 120.07485 * 179.79167 * 18 17 16
20 20 C 1.42906 * 116.99859 * 359.71879 * 19 18 17
21 21 C 1.39158 * 119.85180 * 359.51290 * 18 17 16
22 22 O 1.35990 * 120.07093 * 180.23150 * 21 18 17
23 23 C 1.42902 * 117.00037 * 179.97438 * 22 21 18
24 24 C 1.38249 * 119.92537 * 90.00227 * 15 12 3
25 25 H 1.08994 * 109.47378 * 184.00725 * 1 2 3
26 26 H 1.09007 * 109.47167 * 304.01227 * 1 2 3
27 27 H 1.09008 * 109.46883 * 64.00821 * 1 2 3
28 28 H 1.08991 * 109.47297 * 239.99487 * 2 1 3
29 29 H 1.08999 * 109.46948 * 119.99536 * 2 1 3
30 30 H 0.97001 * 120.00000 * 180.02562 * 7 6 4
31 31 H 1.08001 * 119.92528 * 0.02562 * 16 15 12
32 32 H 1.07998 * 120.00849 * 180.23215 * 17 16 15
33 33 H 1.09002 * 109.46745 * 60.00746 * 20 19 18
34 34 H 1.09000 * 109.46877 * 180.02562 * 20 19 18
35 35 H 1.08991 * 109.47497 * 300.00155 * 20 19 18
36 36 H 1.09004 * 109.46770 * 60.00276 * 23 22 21
37 37 H 1.09002 * 109.47508 * 179.97438 * 23 22 21
38 38 H 1.08999 * 109.47201 * 300.00471 * 23 22 21
39 39 H 1.07993 * 120.00066 * 0.02562 * 24 15 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0184 1.3812 0.0000
4 6 2.1760 2.0517 -1.1836
5 1 1.8671 3.0833 -1.2651
6 6 2.7326 1.4052 -2.2787
7 7 2.5001 1.8520 -3.4947
8 14 3.8114 -0.0987 -2.0265
9 1 2.9919 -1.3274 -2.1809
10 1 4.9014 -0.1007 -3.0351
11 1 4.3987 -0.0636 -0.6630
12 16 2.3799 2.1317 1.4312
13 8 3.3033 3.1659 1.1200
14 8 2.6562 1.0989 2.3673
15 6 0.9101 2.9281 1.9883
16 6 0.6448 4.2305 1.6081
17 6 -0.5093 4.8580 2.0386
18 6 -1.3985 4.1848 2.8610
19 8 -2.5322 4.8021 3.2888
20 6 -2.7405 6.1483 2.8567
21 6 -1.1316 2.8737 3.2433
22 8 -2.0035 2.2072 4.0464
23 6 -1.6649 0.8641 4.3980
24 6 0.0246 2.2489 2.8043
25 1 -0.3634 -1.0251 0.0718
26 1 -0.3634 0.5749 0.8519
27 1 -0.3633 0.4504 -0.9238
28 1 1.8933 -0.5139 -0.8899
29 1 1.8933 -0.5138 0.8900
30 1 2.8888 1.4000 -4.2600
31 1 1.3386 4.7574 0.9699
32 1 -0.7161 5.8743 1.7371
33 1 -2.7841 6.1777 1.7680
34 1 -3.6784 6.5209 3.2685
35 1 -1.9178 6.7729 3.2045
36 1 -0.7130 0.8566 4.9291
37 1 -2.4421 0.4496 5.0400
38 1 -1.5809 0.2619 3.4933
39 1 0.2342 1.2316 3.1000
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000057593259.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:14:33
Heat of formation + Delta-G solvation = -101.943516 kcal
Electronic energy + Delta-G solvation = -25534.228673 eV
Core-core repulsion = 21763.977591 eV
Total energy + Delta-G solvation = -3770.251082 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 315.102 amu
Computer time = 1.45 seconds
Orbital eigenvalues (eV)
-40.53876 -38.51847 -36.82376 -36.36123 -36.07462 -34.84307 -32.09810 -30.50714
-30.34239 -29.50059 -27.39114 -27.25121 -24.38347 -22.79163 -22.25664 -22.16311
-19.06569 -18.36964 -17.65601 -16.98846 -16.67196 -16.42402 -16.12668 -15.96672
-15.34136 -15.31081 -14.79248 -14.55070 -14.23001 -13.38562 -13.26285 -13.18187
-12.96629 -12.81234 -12.61413 -12.38796 -12.25321 -11.69015 -11.58097 -11.29785
-11.28038 -11.21855 -11.14486 -11.05399 -11.03773 -10.87956 -10.63196 -10.26039
-10.06289 -9.86772 -8.98357 -8.75895 -8.07572 -7.94011 -6.41631 -4.03624
0.97379 1.36719 1.42430 3.10863 3.12582 3.23985 3.29277 3.36879
3.51873 4.09773 4.24652 4.58753 4.70182 4.85954 4.94171 4.99581
5.02602 5.09608 5.17887 5.18332 5.31577 5.41123 5.48717 5.55577
5.63337 5.70872 5.87582 5.98793 6.01384 6.21671 6.27248 6.34792
6.55553 6.63349 6.83419 6.94423 7.12274 7.49747 7.67310 8.26987
9.09817 9.14454 10.67990
Molecular weight = 315.10amu
Principal moments of inertia in cm(-1)
A = 0.018204 B = 0.005149 C = 0.004772
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1537.796405 B = 5436.300999 C = 5865.919992
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.164 4.164
2 C 0.107 3.893
3 N -0.864 5.864
4 C -0.292 4.292
5 H 0.103 0.897
6 C 0.073 3.927
7 N -0.858 5.858
8 Si 0.870 3.130
9 H -0.273 1.273
10 H -0.286 1.286
11 H -0.262 1.262
12 S 2.639 3.361
13 O -0.960 6.960
14 O -0.999 6.999
15 C -0.650 4.650
16 C -0.006 4.006
17 C -0.196 4.196
18 C 0.141 3.859
19 O -0.305 6.305
20 C 0.024 3.976
21 C 0.074 3.926
22 O -0.309 6.309
23 C 0.021 3.979
24 C -0.078 4.078
25 H 0.052 0.948
26 H 0.046 0.954
27 H 0.069 0.931
28 H 0.070 0.930
29 H 0.072 0.928
30 H 0.274 0.726
31 H 0.147 0.853
32 H 0.141 0.859
33 H 0.059 0.941
34 H 0.100 0.900
35 H 0.057 0.943
36 H 0.057 0.943
37 H 0.100 0.900
38 H 0.058 0.942
39 H 0.148 0.852
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.794 1.870 10.839 14.728
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.223 4.223
2 C -0.019 4.019
3 N -0.697 5.697
4 C -0.428 4.428
5 H 0.121 0.879
6 C -0.137 4.137
7 N -0.495 5.495
8 Si 0.697 3.303
9 H -0.199 1.199
10 H -0.213 1.213
11 H -0.186 1.186
12 S 2.737 3.263
13 O -0.950 6.950
14 O -0.988 6.988
15 C -0.734 4.734
16 C -0.026 4.026
17 C -0.216 4.216
18 C 0.095 3.905
19 O -0.218 6.218
20 C -0.072 4.072
21 C 0.028 3.972
22 O -0.223 6.223
23 C -0.074 4.074
24 C -0.098 4.098
25 H 0.071 0.929
26 H 0.065 0.935
27 H 0.088 0.912
28 H 0.088 0.912
29 H 0.091 0.909
30 H 0.085 0.915
31 H 0.165 0.835
32 H 0.159 0.841
33 H 0.077 0.923
34 H 0.118 0.882
35 H 0.075 0.925
36 H 0.076 0.924
37 H 0.118 0.882
38 H 0.077 0.923
39 H 0.165 0.835
Dipole moment (debyes) X Y Z Total
from point charges -9.322 1.901 11.439 14.878
hybrid contribution 0.066 -0.495 -0.272 0.569
sum -9.255 1.406 11.167 14.572
Atomic orbital electron populations
1.22174 0.96928 1.00513 1.02724 1.21462 0.94042 0.84310 1.02089
1.52902 1.77408 1.20380 1.18986 1.18612 1.39621 0.99191 0.85404
0.87938 1.25446 0.95304 0.98063 0.94843 1.69833 1.40712 1.41004
0.97950 0.87009 0.81298 0.82749 0.79237 1.19945 1.21270 1.18617
1.04622 0.73741 0.73997 0.73939 1.93467 1.58586 1.59144 1.83823
1.93412 1.83675 1.56944 1.64787 1.31088 1.23995 1.06471 1.11874
1.20712 0.95165 0.92284 0.94395 1.21173 0.96344 1.01410 1.02656
1.18430 0.87144 0.89934 0.94975 1.86170 1.37822 1.28157 1.69686
1.23122 1.02609 0.80893 1.00527 1.18185 0.91533 0.90327 0.97143
1.86127 1.45072 1.27197 1.63865 1.23128 1.02326 0.81126 1.00809
1.20760 0.91990 1.00209 0.96808 0.92931 0.93525 0.91214 0.91175
0.90920 0.91546 0.83523 0.84103 0.92283 0.88161 0.92475 0.92429
0.88159 0.92349 0.83466
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 32.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.85 10.22 37.16 0.38 -2.47 16
2 C 0.11 2.20 5.31 -4.04 -0.02 2.18 16
3 N -0.86 -20.00 2.37 -59.91 -0.14 -20.14 16
4 C -0.29 -7.59 9.27 -15.06 -0.14 -7.73 16
5 H 0.10 2.77 8.06 -52.49 -0.42 2.35 16
6 C 0.07 1.95 5.30 -17.43 -0.09 1.86 16
7 N -0.86 -23.62 13.97 55.49 0.78 -22.84 16
8 Si 0.87 20.61 25.26 -169.99 -4.29 16.31 16
9 H -0.27 -6.03 6.71 56.52 0.38 -5.65 16
10 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16
11 H -0.26 -6.31 7.11 56.52 0.40 -5.90 16
12 S 2.64 58.63 5.65 -107.50 -0.61 58.02 16
13 O -0.96 -23.85 16.49 -57.17 -0.94 -24.79 16
14 O -1.00 -22.62 15.84 -57.17 -0.91 -23.53 16
15 C -0.65 -12.28 5.97 -39.57 -0.24 -12.52 16
16 C -0.01 -0.11 9.51 -39.58 -0.38 -0.48 16
17 C -0.20 -2.91 9.04 -39.46 -0.36 -3.27 16
18 C 0.14 2.20 6.70 -39.12 -0.26 1.94 16
19 O -0.31 -4.26 10.28 -34.22 -0.35 -4.61 16
20 C 0.02 0.21 9.81 101.05 0.99 1.21 16
21 C 0.07 1.21 6.70 -39.12 -0.26 0.95 16
22 O -0.31 -4.61 10.28 -34.21 -0.35 -4.96 16
23 C 0.02 0.23 9.81 101.05 0.99 1.22 16
24 C -0.08 -1.33 7.22 -39.46 -0.28 -1.61 16
25 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16
26 H 0.05 0.76 6.80 -51.93 -0.35 0.41 16
27 H 0.07 1.30 8.14 -51.92 -0.42 0.88 16
28 H 0.07 1.49 3.73 -51.93 -0.19 1.30 16
29 H 0.07 1.38 6.94 -51.93 -0.36 1.02 16
30 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16
31 H 0.15 2.50 7.61 -52.49 -0.40 2.10 16
32 H 0.14 1.60 6.30 -52.49 -0.33 1.27 16
33 H 0.06 0.49 7.65 -51.93 -0.40 0.09 16
34 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16
35 H 0.06 0.45 7.67 -51.93 -0.40 0.05 16
36 H 0.06 0.60 7.66 -51.93 -0.40 0.20 16
37 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16
38 H 0.06 0.60 7.67 -51.93 -0.40 0.21 16
39 H 0.15 2.30 5.85 -52.49 -0.31 1.99 16
LS Contribution 332.75 15.07 5.01 5.01
Total: -1.00 -32.32 332.75 -6.28 -38.60
By element:
Atomic # 1 Polarization: 6.47 SS G_CDS: -4.81 Total: 1.66 kcal
Atomic # 6 Polarization: -19.07 SS G_CDS: 0.33 Total: -18.74 kcal
Atomic # 7 Polarization: -43.62 SS G_CDS: 0.63 Total: -42.99 kcal
Atomic # 8 Polarization: -55.34 SS G_CDS: -2.55 Total: -57.89 kcal
Atomic # 14 Polarization: 20.61 SS G_CDS: -4.29 Total: 16.31 kcal
Atomic # 16 Polarization: 58.63 SS G_CDS: -0.61 Total: 58.02 kcal
Total LS contribution 5.01 Total: 5.01 kcal
Total: -32.32 -6.28 -38.60 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000057593259.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -63.345 kcal
(2) G-P(sol) polarization free energy of solvation -32.317 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.662 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.282 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.598 kcal
(6) G-S(sol) free energy of system = (1) + (5) -101.944 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.45 seconds