Wall clock time and date at job start Tue Mar 31 2020 11:14:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46504 * 109.47389 * 2 1 4 4 C 1.36939 * 119.99565 * 273.62184 * 3 2 1 5 5 H 1.08000 * 119.99596 * 137.76353 * 4 3 2 6 6 C 1.38810 * 120.00122 * 317.77089 * 4 3 2 7 7 N 1.31617 * 119.99876 * 157.80311 * 6 4 3 8 8 Si 1.86800 * 120.00060 * 337.80237 * 6 4 3 9 9 H 1.48496 * 109.47386 * 95.57923 * 8 6 4 10 10 H 1.48500 * 109.46924 * 215.57978 * 8 6 4 11 11 H 1.48503 * 109.46981 * 335.57875 * 8 6 4 12 12 S 1.65596 * 120.00273 * 93.62244 * 3 2 1 13 13 O 1.42099 * 106.40313 * 156.45959 * 12 3 2 14 14 O 1.42103 * 106.40187 * 23.54116 * 12 3 2 15 15 C 1.76203 * 107.21689 * 269.99983 * 12 3 2 16 16 C 1.38247 * 119.92861 * 270.02034 * 15 12 3 17 17 C 1.38239 * 120.15110 * 179.76825 * 16 15 12 18 18 C 1.38570 * 119.99551 * 0.46801 * 17 16 15 19 19 O 1.35991 * 120.07485 * 179.79167 * 18 17 16 20 20 C 1.42906 * 116.99859 * 359.71879 * 19 18 17 21 21 C 1.39158 * 119.85180 * 359.51290 * 18 17 16 22 22 O 1.35990 * 120.07093 * 180.23150 * 21 18 17 23 23 C 1.42902 * 117.00037 * 179.97438 * 22 21 18 24 24 C 1.38249 * 119.92537 * 90.00227 * 15 12 3 25 25 H 1.08994 * 109.47378 * 184.00725 * 1 2 3 26 26 H 1.09007 * 109.47167 * 304.01227 * 1 2 3 27 27 H 1.09008 * 109.46883 * 64.00821 * 1 2 3 28 28 H 1.08991 * 109.47297 * 239.99487 * 2 1 3 29 29 H 1.08999 * 109.46948 * 119.99536 * 2 1 3 30 30 H 0.97001 * 120.00000 * 180.02562 * 7 6 4 31 31 H 1.08001 * 119.92528 * 0.02562 * 16 15 12 32 32 H 1.07998 * 120.00849 * 180.23215 * 17 16 15 33 33 H 1.09002 * 109.46745 * 60.00746 * 20 19 18 34 34 H 1.09000 * 109.46877 * 180.02562 * 20 19 18 35 35 H 1.08991 * 109.47497 * 300.00155 * 20 19 18 36 36 H 1.09004 * 109.46770 * 60.00276 * 23 22 21 37 37 H 1.09002 * 109.47508 * 179.97438 * 23 22 21 38 38 H 1.08999 * 109.47201 * 300.00471 * 23 22 21 39 39 H 1.07993 * 120.00066 * 0.02562 * 24 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1760 2.0517 -1.1836 5 1 1.8671 3.0833 -1.2651 6 6 2.7326 1.4052 -2.2787 7 7 2.5001 1.8520 -3.4947 8 14 3.8114 -0.0987 -2.0265 9 1 2.9919 -1.3274 -2.1809 10 1 4.9014 -0.1007 -3.0351 11 1 4.3987 -0.0636 -0.6630 12 16 2.3799 2.1317 1.4312 13 8 3.3033 3.1659 1.1200 14 8 2.6562 1.0989 2.3673 15 6 0.9101 2.9281 1.9883 16 6 0.6448 4.2305 1.6081 17 6 -0.5093 4.8580 2.0386 18 6 -1.3985 4.1848 2.8610 19 8 -2.5322 4.8021 3.2888 20 6 -2.7405 6.1483 2.8567 21 6 -1.1316 2.8737 3.2433 22 8 -2.0035 2.2072 4.0464 23 6 -1.6649 0.8641 4.3980 24 6 0.0246 2.2489 2.8043 25 1 -0.3634 -1.0251 0.0718 26 1 -0.3634 0.5749 0.8519 27 1 -0.3633 0.4504 -0.9238 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 2.8888 1.4000 -4.2600 31 1 1.3386 4.7574 0.9699 32 1 -0.7161 5.8743 1.7371 33 1 -2.7841 6.1777 1.7680 34 1 -3.6784 6.5209 3.2685 35 1 -1.9178 6.7729 3.2045 36 1 -0.7130 0.8566 4.9291 37 1 -2.4421 0.4496 5.0400 38 1 -1.5809 0.2619 3.4933 39 1 0.2342 1.2316 3.1000 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057593259.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:33 Heat of formation + Delta-G solvation = -101.943516 kcal Electronic energy + Delta-G solvation = -25534.228673 eV Core-core repulsion = 21763.977591 eV Total energy + Delta-G solvation = -3770.251082 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.102 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -40.53876 -38.51847 -36.82376 -36.36123 -36.07462 -34.84307 -32.09810 -30.50714 -30.34239 -29.50059 -27.39114 -27.25121 -24.38347 -22.79163 -22.25664 -22.16311 -19.06569 -18.36964 -17.65601 -16.98846 -16.67196 -16.42402 -16.12668 -15.96672 -15.34136 -15.31081 -14.79248 -14.55070 -14.23001 -13.38562 -13.26285 -13.18187 -12.96629 -12.81234 -12.61413 -12.38796 -12.25321 -11.69015 -11.58097 -11.29785 -11.28038 -11.21855 -11.14486 -11.05399 -11.03773 -10.87956 -10.63196 -10.26039 -10.06289 -9.86772 -8.98357 -8.75895 -8.07572 -7.94011 -6.41631 -4.03624 0.97379 1.36719 1.42430 3.10863 3.12582 3.23985 3.29277 3.36879 3.51873 4.09773 4.24652 4.58753 4.70182 4.85954 4.94171 4.99581 5.02602 5.09608 5.17887 5.18332 5.31577 5.41123 5.48717 5.55577 5.63337 5.70872 5.87582 5.98793 6.01384 6.21671 6.27248 6.34792 6.55553 6.63349 6.83419 6.94423 7.12274 7.49747 7.67310 8.26987 9.09817 9.14454 10.67990 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.018204 B = 0.005149 C = 0.004772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.796405 B = 5436.300999 C = 5865.919992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.107 3.893 3 N -0.864 5.864 4 C -0.292 4.292 5 H 0.103 0.897 6 C 0.073 3.927 7 N -0.858 5.858 8 Si 0.870 3.130 9 H -0.273 1.273 10 H -0.286 1.286 11 H -0.262 1.262 12 S 2.639 3.361 13 O -0.960 6.960 14 O -0.999 6.999 15 C -0.650 4.650 16 C -0.006 4.006 17 C -0.196 4.196 18 C 0.141 3.859 19 O -0.305 6.305 20 C 0.024 3.976 21 C 0.074 3.926 22 O -0.309 6.309 23 C 0.021 3.979 24 C -0.078 4.078 25 H 0.052 0.948 26 H 0.046 0.954 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.274 0.726 31 H 0.147 0.853 32 H 0.141 0.859 33 H 0.059 0.941 34 H 0.100 0.900 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.100 0.900 38 H 0.058 0.942 39 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.794 1.870 10.839 14.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.019 4.019 3 N -0.697 5.697 4 C -0.428 4.428 5 H 0.121 0.879 6 C -0.137 4.137 7 N -0.495 5.495 8 Si 0.697 3.303 9 H -0.199 1.199 10 H -0.213 1.213 11 H -0.186 1.186 12 S 2.737 3.263 13 O -0.950 6.950 14 O -0.988 6.988 15 C -0.734 4.734 16 C -0.026 4.026 17 C -0.216 4.216 18 C 0.095 3.905 19 O -0.218 6.218 20 C -0.072 4.072 21 C 0.028 3.972 22 O -0.223 6.223 23 C -0.074 4.074 24 C -0.098 4.098 25 H 0.071 0.929 26 H 0.065 0.935 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.165 0.835 32 H 0.159 0.841 33 H 0.077 0.923 34 H 0.118 0.882 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.118 0.882 38 H 0.077 0.923 39 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -9.322 1.901 11.439 14.878 hybrid contribution 0.066 -0.495 -0.272 0.569 sum -9.255 1.406 11.167 14.572 Atomic orbital electron populations 1.22174 0.96928 1.00513 1.02724 1.21462 0.94042 0.84310 1.02089 1.52902 1.77408 1.20380 1.18986 1.18612 1.39621 0.99191 0.85404 0.87938 1.25446 0.95304 0.98063 0.94843 1.69833 1.40712 1.41004 0.97950 0.87009 0.81298 0.82749 0.79237 1.19945 1.21270 1.18617 1.04622 0.73741 0.73997 0.73939 1.93467 1.58586 1.59144 1.83823 1.93412 1.83675 1.56944 1.64787 1.31088 1.23995 1.06471 1.11874 1.20712 0.95165 0.92284 0.94395 1.21173 0.96344 1.01410 1.02656 1.18430 0.87144 0.89934 0.94975 1.86170 1.37822 1.28157 1.69686 1.23122 1.02609 0.80893 1.00527 1.18185 0.91533 0.90327 0.97143 1.86127 1.45072 1.27197 1.63865 1.23128 1.02326 0.81126 1.00809 1.20760 0.91990 1.00209 0.96808 0.92931 0.93525 0.91214 0.91175 0.90920 0.91546 0.83523 0.84103 0.92283 0.88161 0.92475 0.92429 0.88159 0.92349 0.83466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.85 10.22 37.16 0.38 -2.47 16 2 C 0.11 2.20 5.31 -4.04 -0.02 2.18 16 3 N -0.86 -20.00 2.37 -59.91 -0.14 -20.14 16 4 C -0.29 -7.59 9.27 -15.06 -0.14 -7.73 16 5 H 0.10 2.77 8.06 -52.49 -0.42 2.35 16 6 C 0.07 1.95 5.30 -17.43 -0.09 1.86 16 7 N -0.86 -23.62 13.97 55.49 0.78 -22.84 16 8 Si 0.87 20.61 25.26 -169.99 -4.29 16.31 16 9 H -0.27 -6.03 6.71 56.52 0.38 -5.65 16 10 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.26 -6.31 7.11 56.52 0.40 -5.90 16 12 S 2.64 58.63 5.65 -107.50 -0.61 58.02 16 13 O -0.96 -23.85 16.49 -57.17 -0.94 -24.79 16 14 O -1.00 -22.62 15.84 -57.17 -0.91 -23.53 16 15 C -0.65 -12.28 5.97 -39.57 -0.24 -12.52 16 16 C -0.01 -0.11 9.51 -39.58 -0.38 -0.48 16 17 C -0.20 -2.91 9.04 -39.46 -0.36 -3.27 16 18 C 0.14 2.20 6.70 -39.12 -0.26 1.94 16 19 O -0.31 -4.26 10.28 -34.22 -0.35 -4.61 16 20 C 0.02 0.21 9.81 101.05 0.99 1.21 16 21 C 0.07 1.21 6.70 -39.12 -0.26 0.95 16 22 O -0.31 -4.61 10.28 -34.21 -0.35 -4.96 16 23 C 0.02 0.23 9.81 101.05 0.99 1.22 16 24 C -0.08 -1.33 7.22 -39.46 -0.28 -1.61 16 25 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.05 0.76 6.80 -51.93 -0.35 0.41 16 27 H 0.07 1.30 8.14 -51.92 -0.42 0.88 16 28 H 0.07 1.49 3.73 -51.93 -0.19 1.30 16 29 H 0.07 1.38 6.94 -51.93 -0.36 1.02 16 30 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 31 H 0.15 2.50 7.61 -52.49 -0.40 2.10 16 32 H 0.14 1.60 6.30 -52.49 -0.33 1.27 16 33 H 0.06 0.49 7.65 -51.93 -0.40 0.09 16 34 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.45 7.67 -51.93 -0.40 0.05 16 36 H 0.06 0.60 7.66 -51.93 -0.40 0.20 16 37 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.06 0.60 7.67 -51.93 -0.40 0.21 16 39 H 0.15 2.30 5.85 -52.49 -0.31 1.99 16 LS Contribution 332.75 15.07 5.01 5.01 Total: -1.00 -32.32 332.75 -6.28 -38.60 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: -4.81 Total: 1.66 kcal Atomic # 6 Polarization: -19.07 SS G_CDS: 0.33 Total: -18.74 kcal Atomic # 7 Polarization: -43.62 SS G_CDS: 0.63 Total: -42.99 kcal Atomic # 8 Polarization: -55.34 SS G_CDS: -2.55 Total: -57.89 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -4.29 Total: 16.31 kcal Atomic # 16 Polarization: 58.63 SS G_CDS: -0.61 Total: 58.02 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.32 -6.28 -38.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057593259.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.345 kcal (2) G-P(sol) polarization free energy of solvation -32.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds