Wall clock time and date at job start Tue Mar 31 2020 11:14:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46504 * 109.47389 * 2 1 4 4 C 1.36939 * 119.99565 * 273.62184 * 3 2 1 5 5 H 1.08000 * 119.99596 * 137.76353 * 4 3 2 6 6 C 1.38810 * 120.00122 * 317.77089 * 4 3 2 7 7 N 1.31617 * 119.99876 * 157.80311 * 6 4 3 8 8 Si 1.86800 * 120.00060 * 337.80237 * 6 4 3 9 9 H 1.48496 * 109.47386 * 95.57923 * 8 6 4 10 10 H 1.48500 * 109.46924 * 215.57978 * 8 6 4 11 11 H 1.48503 * 109.46981 * 335.57875 * 8 6 4 12 12 S 1.65596 * 120.00273 * 93.62244 * 3 2 1 13 13 O 1.42099 * 106.40313 * 156.45959 * 12 3 2 14 14 O 1.42103 * 106.40187 * 23.54116 * 12 3 2 15 15 C 1.76203 * 107.21689 * 269.99983 * 12 3 2 16 16 C 1.38247 * 119.92861 * 270.02034 * 15 12 3 17 17 C 1.38239 * 120.15110 * 179.76825 * 16 15 12 18 18 C 1.38570 * 119.99551 * 0.46801 * 17 16 15 19 19 O 1.35991 * 120.07485 * 179.79167 * 18 17 16 20 20 C 1.42906 * 116.99859 * 359.71879 * 19 18 17 21 21 C 1.39158 * 119.85180 * 359.51290 * 18 17 16 22 22 O 1.35990 * 120.07093 * 180.23150 * 21 18 17 23 23 C 1.42902 * 117.00037 * 179.97438 * 22 21 18 24 24 C 1.38249 * 119.92537 * 90.00227 * 15 12 3 25 25 H 1.08994 * 109.47378 * 184.00725 * 1 2 3 26 26 H 1.09007 * 109.47167 * 304.01227 * 1 2 3 27 27 H 1.09008 * 109.46883 * 64.00821 * 1 2 3 28 28 H 1.08991 * 109.47297 * 239.99487 * 2 1 3 29 29 H 1.08999 * 109.46948 * 119.99536 * 2 1 3 30 30 H 0.97001 * 120.00000 * 180.02562 * 7 6 4 31 31 H 1.08001 * 119.92528 * 0.02562 * 16 15 12 32 32 H 1.07998 * 120.00849 * 180.23215 * 17 16 15 33 33 H 1.09002 * 109.46745 * 60.00746 * 20 19 18 34 34 H 1.09000 * 109.46877 * 180.02562 * 20 19 18 35 35 H 1.08991 * 109.47497 * 300.00155 * 20 19 18 36 36 H 1.09004 * 109.46770 * 60.00276 * 23 22 21 37 37 H 1.09002 * 109.47508 * 179.97438 * 23 22 21 38 38 H 1.08999 * 109.47201 * 300.00471 * 23 22 21 39 39 H 1.07993 * 120.00066 * 0.02562 * 24 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1760 2.0517 -1.1836 5 1 1.8671 3.0833 -1.2651 6 6 2.7326 1.4052 -2.2787 7 7 2.5001 1.8520 -3.4947 8 14 3.8114 -0.0987 -2.0265 9 1 2.9919 -1.3274 -2.1809 10 1 4.9014 -0.1007 -3.0351 11 1 4.3987 -0.0636 -0.6630 12 16 2.3799 2.1317 1.4312 13 8 3.3033 3.1659 1.1200 14 8 2.6562 1.0989 2.3673 15 6 0.9101 2.9281 1.9883 16 6 0.6448 4.2305 1.6081 17 6 -0.5093 4.8580 2.0386 18 6 -1.3985 4.1848 2.8610 19 8 -2.5322 4.8021 3.2888 20 6 -2.7405 6.1483 2.8567 21 6 -1.1316 2.8737 3.2433 22 8 -2.0035 2.2072 4.0464 23 6 -1.6649 0.8641 4.3980 24 6 0.0246 2.2489 2.8043 25 1 -0.3634 -1.0251 0.0718 26 1 -0.3634 0.5749 0.8519 27 1 -0.3633 0.4504 -0.9238 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 2.8888 1.4000 -4.2600 31 1 1.3386 4.7574 0.9699 32 1 -0.7161 5.8743 1.7371 33 1 -2.7841 6.1777 1.7680 34 1 -3.6784 6.5209 3.2685 35 1 -1.9178 6.7729 3.2045 36 1 -0.7130 0.8566 4.9291 37 1 -2.4421 0.4496 5.0400 38 1 -1.5809 0.2619 3.4933 39 1 0.2342 1.2316 3.1000 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057593259.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:31 Heat of formation + Delta-G solvation = -125.473552 kcal Electronic energy + Delta-G solvation = -25535.249012 eV Core-core repulsion = 21763.977591 eV Total energy + Delta-G solvation = -3771.271421 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.102 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.69121 -39.56732 -38.18371 -38.04364 -37.85438 -36.71167 -34.02876 -31.76078 -31.50867 -31.12655 -28.31887 -28.14623 -26.30261 -24.19618 -23.76432 -23.32219 -20.50566 -19.96311 -19.10694 -18.52536 -18.21844 -17.93367 -17.42845 -17.16584 -17.07373 -16.23558 -16.07733 -15.89566 -15.53063 -15.03993 -15.00235 -14.55265 -14.33053 -14.24913 -14.10828 -13.83205 -13.29224 -13.17658 -13.05146 -12.96406 -12.78344 -12.66545 -12.65369 -12.46385 -12.28820 -12.25376 -12.15504 -11.93301 -11.78791 -11.57059 -10.79851 -10.07254 -9.91382 -9.16042 -8.41843 -6.06630 -0.47163 -0.20324 0.13944 1.24713 1.38097 1.46820 2.10815 2.13801 2.20682 2.27820 2.50183 2.77844 3.05667 3.39430 3.65443 3.81222 4.04676 4.12414 4.13577 4.33640 4.37064 4.38041 4.38896 4.45349 4.47204 4.55520 4.60637 4.72202 4.73941 4.80026 4.94859 5.01731 5.05039 5.32848 5.38090 5.51837 5.72670 5.92073 6.24011 6.39445 7.13162 7.14687 8.72092 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.018204 B = 0.005149 C = 0.004772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.796405 B = 5436.300999 C = 5865.919992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.091 3.909 3 N -0.874 5.874 4 C -0.301 4.301 5 H 0.077 0.923 6 C 0.033 3.967 7 N -0.901 5.901 8 Si 0.910 3.090 9 H -0.246 1.246 10 H -0.286 1.286 11 H -0.270 1.270 12 S 2.660 3.340 13 O -0.994 6.994 14 O -1.003 7.003 15 C -0.665 4.665 16 C -0.021 4.021 17 C -0.188 4.188 18 C 0.146 3.854 19 O -0.316 6.316 20 C 0.010 3.990 21 C 0.070 3.930 22 O -0.318 6.318 23 C 0.009 3.991 24 C -0.083 4.083 25 H 0.088 0.912 26 H 0.055 0.945 27 H 0.050 0.950 28 H 0.062 0.938 29 H 0.089 0.911 30 H 0.277 0.723 31 H 0.141 0.859 32 H 0.176 0.824 33 H 0.068 0.932 34 H 0.127 0.873 35 H 0.071 0.929 36 H 0.061 0.939 37 H 0.130 0.870 38 H 0.064 0.936 39 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.674 1.417 12.738 17.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.034 4.034 3 N -0.707 5.707 4 C -0.435 4.435 5 H 0.094 0.906 6 C -0.173 4.173 7 N -0.540 5.540 8 Si 0.735 3.265 9 H -0.171 1.171 10 H -0.213 1.213 11 H -0.194 1.194 12 S 2.760 3.240 13 O -0.985 6.985 14 O -0.993 6.993 15 C -0.755 4.755 16 C -0.041 4.041 17 C -0.207 4.207 18 C 0.099 3.901 19 O -0.229 6.229 20 C -0.084 4.084 21 C 0.023 3.977 22 O -0.232 6.232 23 C -0.085 4.085 24 C -0.103 4.103 25 H 0.107 0.893 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.080 0.920 29 H 0.107 0.893 30 H 0.087 0.913 31 H 0.159 0.841 32 H 0.193 0.807 33 H 0.087 0.913 34 H 0.145 0.855 35 H 0.090 0.910 36 H 0.080 0.920 37 H 0.149 0.851 38 H 0.083 0.917 39 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -11.181 1.403 13.271 17.409 hybrid contribution 0.426 -0.231 -0.621 0.788 sum -10.754 1.172 12.650 16.645 Atomic orbital electron populations 1.22114 0.94593 1.02833 1.02135 1.21740 0.96215 0.83006 1.02424 1.52941 1.78185 1.21185 1.18400 1.18390 1.39944 0.98263 0.86906 0.90556 1.25906 0.96295 1.00539 0.94547 1.69907 1.42469 1.43038 0.98609 0.86362 0.80199 0.81498 0.78471 1.17055 1.21273 1.19427 1.03022 0.74442 0.73392 0.73148 1.93434 1.60953 1.59721 1.84343 1.93406 1.84521 1.57390 1.63953 1.30475 1.23334 1.07324 1.14332 1.20820 0.96327 0.92084 0.94869 1.21438 0.94854 1.02748 1.01663 1.18631 0.87515 0.89935 0.94066 1.86176 1.36713 1.30407 1.69581 1.23531 1.04600 0.78740 1.01510 1.18322 0.91344 0.90915 0.97085 1.86130 1.44839 1.28905 1.63326 1.23481 1.03854 0.79464 1.01745 1.20828 0.92056 1.00745 0.96623 0.89334 0.92629 0.93086 0.91977 0.89314 0.91342 0.84122 0.80654 0.91318 0.85535 0.91013 0.91986 0.85147 0.91718 0.82345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.23 10.22 71.98 0.74 -4.50 16 2 C 0.09 3.66 5.31 86.38 0.46 4.12 16 3 N -0.87 -40.77 2.37 -343.46 -0.81 -41.58 16 4 C -0.30 -16.16 9.27 84.03 0.78 -15.38 16 5 H 0.08 4.38 8.06 -2.91 -0.02 4.36 16 6 C 0.03 1.79 5.30 84.86 0.45 2.24 16 7 N -0.90 -51.28 13.97 21.65 0.30 -50.97 16 8 Si 0.91 42.45 25.26 68.60 1.73 44.19 16 9 H -0.25 -10.26 6.71 99.48 0.67 -9.59 16 10 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 11 H -0.27 -12.79 7.11 99.48 0.71 -12.09 16 12 S 2.66 118.69 5.65 -56.49 -0.32 118.38 16 13 O -0.99 -50.61 16.49 -128.00 -2.11 -52.72 16 14 O -1.00 -44.64 15.84 -128.00 -2.03 -46.67 16 15 C -0.67 -24.84 5.97 22.27 0.13 -24.70 16 16 C -0.02 -0.73 9.51 22.27 0.21 -0.52 16 17 C -0.19 -5.19 9.04 22.35 0.20 -4.99 16 18 C 0.15 4.19 6.70 22.57 0.15 4.34 16 19 O -0.32 -7.85 10.28 -79.59 -0.82 -8.67 16 20 C 0.01 0.15 9.81 113.37 1.11 1.26 16 21 C 0.07 2.13 6.70 22.57 0.15 2.28 16 22 O -0.32 -8.68 10.28 -79.57 -0.82 -9.50 16 23 C 0.01 0.17 9.81 113.37 1.11 1.28 16 24 C -0.08 -2.69 7.22 22.35 0.16 -2.53 16 25 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 26 H 0.05 1.72 6.80 -2.38 -0.02 1.70 16 27 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 28 H 0.06 2.58 3.73 -2.39 -0.01 2.57 16 29 H 0.09 3.22 6.94 -2.39 -0.02 3.20 16 30 H 0.28 14.68 8.31 -92.71 -0.77 13.91 16 31 H 0.14 4.91 7.61 -2.91 -0.02 4.89 16 32 H 0.18 3.46 6.30 -2.91 -0.02 3.44 16 33 H 0.07 0.90 7.65 -2.39 -0.02 0.88 16 34 H 0.13 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.07 0.87 7.67 -2.39 -0.02 0.85 16 36 H 0.06 1.13 7.66 -2.38 -0.02 1.11 16 37 H 0.13 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.06 1.15 7.67 -2.39 -0.02 1.13 16 39 H 0.16 4.65 5.85 -2.91 -0.02 4.63 16 Total: -1.00 -71.07 332.75 1.82 -69.25 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: 1.04 Total: 15.40 kcal Atomic # 6 Polarization: -42.76 SS G_CDS: 5.66 Total: -37.10 kcal Atomic # 7 Polarization: -92.04 SS G_CDS: -0.51 Total: -92.55 kcal Atomic # 8 Polarization: -111.78 SS G_CDS: -5.77 Total: -117.56 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 1.73 Total: 44.19 kcal Atomic # 16 Polarization: 118.69 SS G_CDS: -0.32 Total: 118.38 kcal Total: -71.07 1.82 -69.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057593259.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.225 kcal (2) G-P(sol) polarization free energy of solvation -71.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds