Wall clock time and date at job start Tue Mar 31 2020 10:49:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52991 * 109.47305 * 2 1 4 4 N 1.46500 * 109.47327 * 186.52127 * 3 2 1 5 5 C 1.36908 * 120.00171 * 282.17048 * 4 3 2 6 6 H 1.07992 * 120.00431 * 235.17028 * 5 4 3 7 7 C 1.39015 * 119.99602 * 55.17431 * 5 4 3 8 8 N 1.31385 * 120.00050 * 41.07556 * 7 5 4 9 9 Si 1.86801 * 119.99902 * 221.08037 * 7 5 4 10 10 H 1.48505 * 109.47340 * 59.99639 * 9 7 5 11 11 H 1.48497 * 109.47411 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47004 * 300.00123 * 9 7 5 13 13 C 1.34777 * 120.00235 * 102.17232 * 4 3 2 14 14 O 1.21640 * 120.00284 * 187.29276 * 13 4 3 15 15 C 1.47375 * 119.99710 * 7.29961 * 13 4 3 16 16 C 1.39897 * 120.06908 * 128.22551 * 15 13 4 17 17 C 1.36605 * 119.92711 * 180.02562 * 16 15 13 18 18 C 1.39322 * 120.06897 * 359.97438 * 17 16 15 19 19 S 1.76192 * 119.92724 * 180.02562 * 18 17 16 20 20 C 1.81400 * 103.00016 * 179.97438 * 19 18 17 21 21 F 1.39902 * 109.47359 * 299.99966 * 20 19 18 22 22 F 1.39903 * 109.47062 * 60.00086 * 20 19 18 23 23 C 1.39319 * 120.13960 * 0.26861 * 18 17 16 24 24 C 1.36592 * 120.06839 * 359.45334 * 23 18 17 25 25 H 1.09005 * 109.47220 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47035 * 299.99840 * 1 2 3 27 27 H 1.08997 * 109.47108 * 60.00158 * 1 2 3 28 28 H 1.09003 * 109.47138 * 239.99423 * 2 1 3 29 29 H 1.09007 * 109.47108 * 120.00389 * 2 1 3 30 30 H 1.09002 * 109.47305 * 66.52205 * 3 2 1 31 31 H 1.08999 * 109.47129 * 306.51819 * 3 2 1 32 32 H 0.97012 * 119.99633 * 180.02562 * 8 7 5 33 33 H 1.07993 * 120.03725 * 359.97438 * 16 15 13 34 34 H 1.07996 * 119.96141 * 179.97438 * 17 16 15 35 35 H 1.08996 * 109.47522 * 179.97438 * 20 19 18 36 36 H 1.07996 * 119.96062 * 179.72650 * 23 18 17 37 37 H 1.08006 * 120.03620 * 180.24909 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.4966 1.4454 -0.1569 5 6 4.3008 1.1531 0.9119 6 1 5.0690 1.8487 1.2158 7 6 4.1286 -0.0391 1.6057 8 7 3.8901 -1.1523 0.9499 9 14 4.2363 -0.0584 3.4705 10 1 3.1968 0.8390 4.0357 11 1 4.0174 -1.4415 3.9647 12 1 5.5796 0.4122 3.8937 13 6 4.0450 1.7359 -1.3533 14 8 5.2433 1.6098 -1.5198 15 6 3.1927 2.2064 -2.4597 16 6 3.5229 3.3778 -3.1496 17 6 2.7306 3.8115 -4.1744 18 6 1.5951 3.0883 -4.5330 19 16 0.5761 3.6508 -5.8558 20 6 -0.7333 2.3973 -5.9238 21 9 -0.1662 1.1438 -6.1775 22 9 -1.4106 2.3636 -4.7001 23 6 1.2608 1.9242 -3.8446 24 6 2.0521 1.4822 -2.8227 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.7751 1.9215 0.9426 31 1 1.5846 1.9888 -0.8259 32 1 3.7696 -1.9842 1.4341 33 1 4.4028 3.9389 -2.8717 34 1 2.9848 4.7159 -4.7070 35 1 -1.4345 2.6470 -6.7200 36 1 0.3775 1.3682 -4.1222 37 1 1.7946 0.5774 -2.2920 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000059934178.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:55 Heat of formation + Delta-G solvation = -83.599927 kcal Electronic energy + Delta-G solvation = -24402.916414 eV Core-core repulsion = 20522.373255 eV Total energy + Delta-G solvation = -3880.543160 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.085 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.55864 -47.55067 -39.64881 -37.60488 -35.36052 -32.59742 -31.63153 -31.04423 -30.71899 -27.28771 -25.85569 -25.11145 -23.04891 -22.51794 -20.77086 -19.52006 -18.84894 -18.14928 -17.74465 -17.10939 -16.76315 -16.28167 -15.21520 -14.99107 -14.64854 -14.46605 -14.39698 -14.07405 -13.87312 -13.76983 -13.34238 -13.23595 -13.03896 -12.85688 -12.67332 -12.23985 -11.83555 -11.48698 -11.45888 -11.14843 -11.03946 -10.94135 -10.78994 -10.59803 -10.41263 -10.32757 -9.95728 -9.71430 -8.88496 -8.70785 -8.26307 -7.72113 -7.34024 -6.43220 -4.03871 0.52072 1.09674 1.57238 1.67292 3.16513 3.25400 3.29277 3.40960 3.59464 4.00182 4.08174 4.13991 4.17135 4.71267 4.81950 4.96104 4.96916 5.45276 5.56077 5.60578 5.73592 5.78133 5.82697 6.02495 6.13220 6.16853 6.29728 6.44240 6.44897 6.48850 6.62043 6.74997 6.96765 7.01856 7.39819 7.56923 8.39069 8.51257 9.18121 9.29790 10.02890 10.54746 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.021213 B = 0.004094 C = 0.003650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.644399 B = 6837.742711 C = 7669.951211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.138 4.138 3 C 0.105 3.895 4 N -0.432 5.432 5 C -0.354 4.354 6 H 0.084 0.916 7 C 0.074 3.926 8 N -0.812 5.812 9 Si 0.887 3.113 10 H -0.270 1.270 11 H -0.285 1.285 12 H -0.270 1.270 13 C 0.500 3.500 14 O -0.559 6.559 15 C -0.086 4.086 16 C -0.070 4.070 17 C -0.094 4.094 18 C -0.097 4.097 19 S -0.107 6.107 20 C 0.273 3.727 21 F -0.180 7.180 22 F -0.180 7.180 23 C -0.125 4.125 24 C -0.078 4.078 25 H 0.047 0.953 26 H 0.048 0.952 27 H 0.044 0.956 28 H 0.061 0.939 29 H 0.091 0.909 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.268 0.732 33 H 0.135 0.865 34 H 0.129 0.871 35 H 0.154 0.846 36 H 0.126 0.874 37 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.798 6.732 -11.240 18.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.177 4.177 3 C -0.019 4.019 4 N -0.151 5.151 5 C -0.480 4.480 6 H 0.102 0.898 7 C -0.138 4.138 8 N -0.443 5.443 9 Si 0.712 3.288 10 H -0.196 1.196 11 H -0.211 1.211 12 H -0.195 1.195 13 C 0.288 3.712 14 O -0.441 6.441 15 C -0.091 4.091 16 C -0.090 4.090 17 C -0.117 4.117 18 C -0.209 4.209 19 S 0.130 5.870 20 C 0.110 3.890 21 F -0.161 7.161 22 F -0.161 7.161 23 C -0.148 4.148 24 C -0.098 4.098 25 H 0.066 0.934 26 H 0.067 0.933 27 H 0.063 0.937 28 H 0.079 0.921 29 H 0.109 0.891 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.152 0.848 34 H 0.147 0.853 35 H 0.171 0.829 36 H 0.144 0.856 37 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -12.215 7.348 -12.031 18.653 hybrid contribution -0.240 -1.418 1.719 2.241 sum -12.455 5.930 -10.312 17.223 Atomic orbital electron populations 1.21833 0.97655 1.00736 1.00773 1.22151 0.92767 0.97848 1.04901 1.21820 0.82997 0.96458 1.00583 1.43287 1.04195 1.60592 1.07043 1.18855 1.19744 1.03729 1.05656 0.89837 1.25405 0.94788 0.93854 0.99714 1.70394 1.39203 0.98054 1.36671 0.86673 0.79560 0.77303 0.85292 1.19568 1.21089 1.19482 1.18526 0.87866 0.82627 0.82157 1.90659 1.15339 1.56613 1.81506 1.20747 0.95182 0.95345 0.97812 1.20913 0.98748 0.95352 0.94013 1.20344 0.93508 0.99736 0.98105 1.21511 0.99710 0.99851 0.99847 1.86074 1.25130 1.33362 1.42446 1.24267 0.93559 0.83902 0.87275 1.93132 1.85514 1.43434 1.94036 1.93127 1.80681 1.96407 1.45904 1.20999 1.00995 0.95574 0.97208 1.21347 0.92787 1.00031 0.95658 0.93362 0.93309 0.93666 0.92071 0.89106 0.92073 0.92260 0.92178 0.84758 0.85289 0.82890 0.85630 0.84030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.40 9.91 37.16 0.37 -2.03 16 2 C -0.14 -2.78 4.35 -26.74 -0.12 -2.89 16 3 C 0.11 2.19 4.79 -4.05 -0.02 2.17 16 4 N -0.43 -10.83 2.56 -116.05 -0.30 -11.13 16 5 C -0.35 -9.69 8.43 -15.00 -0.13 -9.82 16 6 H 0.08 2.39 8.06 -52.49 -0.42 1.97 16 7 C 0.07 1.92 4.01 -17.45 -0.07 1.85 16 8 N -0.81 -21.61 11.27 55.50 0.63 -20.99 16 9 Si 0.89 19.63 29.69 -169.99 -5.05 14.58 16 10 H -0.27 -5.85 7.11 56.52 0.40 -5.44 16 11 H -0.29 -6.22 7.11 56.52 0.40 -5.82 16 12 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 13 C 0.50 12.66 7.13 -12.54 -0.09 12.57 16 14 O -0.56 -16.42 17.03 5.24 0.09 -16.33 16 15 C -0.09 -1.74 4.94 -104.94 -0.52 -2.26 16 16 C -0.07 -1.21 9.69 -39.55 -0.38 -1.59 16 17 C -0.09 -1.37 9.73 -39.77 -0.39 -1.76 16 18 C -0.10 -1.40 6.13 -38.78 -0.24 -1.64 16 19 S -0.11 -1.16 22.16 -107.50 -2.38 -3.55 16 20 C 0.27 2.48 5.37 101.05 0.54 3.02 16 21 F -0.18 -2.02 15.65 2.25 0.04 -1.99 16 22 F -0.18 -1.97 15.62 2.25 0.04 -1.94 16 23 C -0.13 -1.96 8.62 -39.77 -0.34 -2.30 16 24 C -0.08 -1.42 7.37 -39.55 -0.29 -1.71 16 25 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 27 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.06 1.32 6.53 -51.93 -0.34 0.98 16 29 H 0.09 2.05 5.28 -51.92 -0.27 1.78 16 30 H 0.06 1.24 8.13 -51.93 -0.42 0.82 16 31 H 0.06 1.12 4.95 -51.93 -0.26 0.86 16 32 H 0.27 6.67 8.31 -40.81 -0.34 6.33 16 33 H 0.13 2.23 8.06 -52.49 -0.42 1.81 16 34 H 0.13 1.53 8.06 -52.49 -0.42 1.10 16 35 H 0.15 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.13 1.81 4.53 -52.49 -0.24 1.58 16 37 H 0.14 2.64 4.81 -52.48 -0.25 2.39 16 LS Contribution 325.04 15.07 4.90 4.90 Total: -1.00 -31.44 325.04 -7.59 -39.03 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -3.88 Total: 3.79 kcal Atomic # 6 Polarization: -4.72 SS G_CDS: -1.67 Total: -6.39 kcal Atomic # 7 Polarization: -32.44 SS G_CDS: 0.33 Total: -32.12 kcal Atomic # 8 Polarization: -16.42 SS G_CDS: 0.09 Total: -16.33 kcal Atomic # 9 Polarization: -3.99 SS G_CDS: 0.07 Total: -3.92 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -5.05 Total: 14.58 kcal Atomic # 16 Polarization: -1.16 SS G_CDS: -2.38 Total: -3.55 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -31.44 -7.59 -39.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000059934178.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.566 kcal (2) G-P(sol) polarization free energy of solvation -31.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds