Wall clock time and date at job start Tue Mar 31 2020 10:49:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.52991 * 109.47305 * 2 1
4 4 N 1.46500 * 109.47327 * 186.52127 * 3 2 1
5 5 C 1.36908 * 120.00171 * 282.17048 * 4 3 2
6 6 H 1.07992 * 120.00431 * 235.17028 * 5 4 3
7 7 C 1.39015 * 119.99602 * 55.17431 * 5 4 3
8 8 N 1.31385 * 120.00050 * 41.07556 * 7 5 4
9 9 Si 1.86801 * 119.99902 * 221.08037 * 7 5 4
10 10 H 1.48505 * 109.47340 * 59.99639 * 9 7 5
11 11 H 1.48497 * 109.47411 * 179.97438 * 9 7 5
12 12 H 1.48500 * 109.47004 * 300.00123 * 9 7 5
13 13 C 1.34777 * 120.00235 * 102.17232 * 4 3 2
14 14 O 1.21640 * 120.00284 * 187.29276 * 13 4 3
15 15 C 1.47375 * 119.99710 * 7.29961 * 13 4 3
16 16 C 1.39897 * 120.06908 * 128.22551 * 15 13 4
17 17 C 1.36605 * 119.92711 * 180.02562 * 16 15 13
18 18 C 1.39322 * 120.06897 * 359.97438 * 17 16 15
19 19 S 1.76192 * 119.92724 * 180.02562 * 18 17 16
20 20 C 1.81400 * 103.00016 * 179.97438 * 19 18 17
21 21 F 1.39902 * 109.47359 * 299.99966 * 20 19 18
22 22 F 1.39903 * 109.47062 * 60.00086 * 20 19 18
23 23 C 1.39319 * 120.13960 * 0.26861 * 18 17 16
24 24 C 1.36592 * 120.06839 * 359.45334 * 23 18 17
25 25 H 1.09005 * 109.47220 * 179.97438 * 1 2 3
26 26 H 1.08999 * 109.47035 * 299.99840 * 1 2 3
27 27 H 1.08997 * 109.47108 * 60.00158 * 1 2 3
28 28 H 1.09003 * 109.47138 * 239.99423 * 2 1 3
29 29 H 1.09007 * 109.47108 * 120.00389 * 2 1 3
30 30 H 1.09002 * 109.47305 * 66.52205 * 3 2 1
31 31 H 1.08999 * 109.47129 * 306.51819 * 3 2 1
32 32 H 0.97012 * 119.99633 * 180.02562 * 8 7 5
33 33 H 1.07993 * 120.03725 * 359.97438 * 16 15 13
34 34 H 1.07996 * 119.96141 * 179.97438 * 17 16 15
35 35 H 1.08996 * 109.47522 * 179.97438 * 20 19 18
36 36 H 1.07996 * 119.96062 * 179.72650 * 23 18 17
37 37 H 1.08006 * 120.03620 * 180.24909 * 24 23 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 7 3.4966 1.4454 -0.1569
5 6 4.3008 1.1531 0.9119
6 1 5.0690 1.8487 1.2158
7 6 4.1286 -0.0391 1.6057
8 7 3.8901 -1.1523 0.9499
9 14 4.2363 -0.0584 3.4705
10 1 3.1968 0.8390 4.0357
11 1 4.0174 -1.4415 3.9647
12 1 5.5796 0.4122 3.8937
13 6 4.0450 1.7359 -1.3533
14 8 5.2433 1.6098 -1.5198
15 6 3.1927 2.2064 -2.4597
16 6 3.5229 3.3778 -3.1496
17 6 2.7306 3.8115 -4.1744
18 6 1.5951 3.0883 -4.5330
19 16 0.5761 3.6508 -5.8558
20 6 -0.7333 2.3973 -5.9238
21 9 -0.1662 1.1438 -6.1775
22 9 -1.4106 2.3636 -4.7001
23 6 1.2608 1.9242 -3.8446
24 6 2.0521 1.4822 -2.8227
25 1 -0.3634 -1.0277 -0.0005
26 1 -0.3633 0.5138 0.8900
27 1 -0.3633 0.5138 -0.8900
28 1 1.8933 -0.5139 -0.8900
29 1 1.8934 -0.5139 0.8900
30 1 1.7751 1.9215 0.9426
31 1 1.5846 1.9888 -0.8259
32 1 3.7696 -1.9842 1.4341
33 1 4.4028 3.9389 -2.8717
34 1 2.9848 4.7159 -4.7070
35 1 -1.4345 2.6470 -6.7200
36 1 0.3775 1.3682 -4.1222
37 1 1.7946 0.5774 -2.2920
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000059934178.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:49:55
Heat of formation + Delta-G solvation = -83.599927 kcal
Electronic energy + Delta-G solvation = -24402.916414 eV
Core-core repulsion = 20522.373255 eV
Total energy + Delta-G solvation = -3880.543160 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 315.085 amu
Computer time = 0.67 seconds
Orbital eigenvalues (eV)
-49.55864 -47.55067 -39.64881 -37.60488 -35.36052 -32.59742 -31.63153 -31.04423
-30.71899 -27.28771 -25.85569 -25.11145 -23.04891 -22.51794 -20.77086 -19.52006
-18.84894 -18.14928 -17.74465 -17.10939 -16.76315 -16.28167 -15.21520 -14.99107
-14.64854 -14.46605 -14.39698 -14.07405 -13.87312 -13.76983 -13.34238 -13.23595
-13.03896 -12.85688 -12.67332 -12.23985 -11.83555 -11.48698 -11.45888 -11.14843
-11.03946 -10.94135 -10.78994 -10.59803 -10.41263 -10.32757 -9.95728 -9.71430
-8.88496 -8.70785 -8.26307 -7.72113 -7.34024 -6.43220 -4.03871 0.52072
1.09674 1.57238 1.67292 3.16513 3.25400 3.29277 3.40960 3.59464
4.00182 4.08174 4.13991 4.17135 4.71267 4.81950 4.96104 4.96916
5.45276 5.56077 5.60578 5.73592 5.78133 5.82697 6.02495 6.13220
6.16853 6.29728 6.44240 6.44897 6.48850 6.62043 6.74997 6.96765
7.01856 7.39819 7.56923 8.39069 8.51257 9.18121 9.29790 10.02890
10.54746
Molecular weight = 315.08amu
Principal moments of inertia in cm(-1)
A = 0.021213 B = 0.004094 C = 0.003650
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1319.644399 B = 6837.742711 C = 7669.951211
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.152 4.152
2 C -0.138 4.138
3 C 0.105 3.895
4 N -0.432 5.432
5 C -0.354 4.354
6 H 0.084 0.916
7 C 0.074 3.926
8 N -0.812 5.812
9 Si 0.887 3.113
10 H -0.270 1.270
11 H -0.285 1.285
12 H -0.270 1.270
13 C 0.500 3.500
14 O -0.559 6.559
15 C -0.086 4.086
16 C -0.070 4.070
17 C -0.094 4.094
18 C -0.097 4.097
19 S -0.107 6.107
20 C 0.273 3.727
21 F -0.180 7.180
22 F -0.180 7.180
23 C -0.125 4.125
24 C -0.078 4.078
25 H 0.047 0.953
26 H 0.048 0.952
27 H 0.044 0.956
28 H 0.061 0.939
29 H 0.091 0.909
30 H 0.061 0.939
31 H 0.059 0.941
32 H 0.268 0.732
33 H 0.135 0.865
34 H 0.129 0.871
35 H 0.154 0.846
36 H 0.126 0.874
37 H 0.142 0.858
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.798 6.732 -11.240 18.315
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.210 4.210
2 C -0.177 4.177
3 C -0.019 4.019
4 N -0.151 5.151
5 C -0.480 4.480
6 H 0.102 0.898
7 C -0.138 4.138
8 N -0.443 5.443
9 Si 0.712 3.288
10 H -0.196 1.196
11 H -0.211 1.211
12 H -0.195 1.195
13 C 0.288 3.712
14 O -0.441 6.441
15 C -0.091 4.091
16 C -0.090 4.090
17 C -0.117 4.117
18 C -0.209 4.209
19 S 0.130 5.870
20 C 0.110 3.890
21 F -0.161 7.161
22 F -0.161 7.161
23 C -0.148 4.148
24 C -0.098 4.098
25 H 0.066 0.934
26 H 0.067 0.933
27 H 0.063 0.937
28 H 0.079 0.921
29 H 0.109 0.891
30 H 0.079 0.921
31 H 0.077 0.923
32 H 0.078 0.922
33 H 0.152 0.848
34 H 0.147 0.853
35 H 0.171 0.829
36 H 0.144 0.856
37 H 0.160 0.840
Dipole moment (debyes) X Y Z Total
from point charges -12.215 7.348 -12.031 18.653
hybrid contribution -0.240 -1.418 1.719 2.241
sum -12.455 5.930 -10.312 17.223
Atomic orbital electron populations
1.21833 0.97655 1.00736 1.00773 1.22151 0.92767 0.97848 1.04901
1.21820 0.82997 0.96458 1.00583 1.43287 1.04195 1.60592 1.07043
1.18855 1.19744 1.03729 1.05656 0.89837 1.25405 0.94788 0.93854
0.99714 1.70394 1.39203 0.98054 1.36671 0.86673 0.79560 0.77303
0.85292 1.19568 1.21089 1.19482 1.18526 0.87866 0.82627 0.82157
1.90659 1.15339 1.56613 1.81506 1.20747 0.95182 0.95345 0.97812
1.20913 0.98748 0.95352 0.94013 1.20344 0.93508 0.99736 0.98105
1.21511 0.99710 0.99851 0.99847 1.86074 1.25130 1.33362 1.42446
1.24267 0.93559 0.83902 0.87275 1.93132 1.85514 1.43434 1.94036
1.93127 1.80681 1.96407 1.45904 1.20999 1.00995 0.95574 0.97208
1.21347 0.92787 1.00031 0.95658 0.93362 0.93309 0.93666 0.92071
0.89106 0.92073 0.92260 0.92178 0.84758 0.85289 0.82890 0.85630
0.84030
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.40 9.91 37.16 0.37 -2.03 16
2 C -0.14 -2.78 4.35 -26.74 -0.12 -2.89 16
3 C 0.11 2.19 4.79 -4.05 -0.02 2.17 16
4 N -0.43 -10.83 2.56 -116.05 -0.30 -11.13 16
5 C -0.35 -9.69 8.43 -15.00 -0.13 -9.82 16
6 H 0.08 2.39 8.06 -52.49 -0.42 1.97 16
7 C 0.07 1.92 4.01 -17.45 -0.07 1.85 16
8 N -0.81 -21.61 11.27 55.50 0.63 -20.99 16
9 Si 0.89 19.63 29.69 -169.99 -5.05 14.58 16
10 H -0.27 -5.85 7.11 56.52 0.40 -5.44 16
11 H -0.29 -6.22 7.11 56.52 0.40 -5.82 16
12 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16
13 C 0.50 12.66 7.13 -12.54 -0.09 12.57 16
14 O -0.56 -16.42 17.03 5.24 0.09 -16.33 16
15 C -0.09 -1.74 4.94 -104.94 -0.52 -2.26 16
16 C -0.07 -1.21 9.69 -39.55 -0.38 -1.59 16
17 C -0.09 -1.37 9.73 -39.77 -0.39 -1.76 16
18 C -0.10 -1.40 6.13 -38.78 -0.24 -1.64 16
19 S -0.11 -1.16 22.16 -107.50 -2.38 -3.55 16
20 C 0.27 2.48 5.37 101.05 0.54 3.02 16
21 F -0.18 -2.02 15.65 2.25 0.04 -1.99 16
22 F -0.18 -1.97 15.62 2.25 0.04 -1.94 16
23 C -0.13 -1.96 8.62 -39.77 -0.34 -2.30 16
24 C -0.08 -1.42 7.37 -39.55 -0.29 -1.71 16
25 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16
26 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16
27 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16
28 H 0.06 1.32 6.53 -51.93 -0.34 0.98 16
29 H 0.09 2.05 5.28 -51.92 -0.27 1.78 16
30 H 0.06 1.24 8.13 -51.93 -0.42 0.82 16
31 H 0.06 1.12 4.95 -51.93 -0.26 0.86 16
32 H 0.27 6.67 8.31 -40.81 -0.34 6.33 16
33 H 0.13 2.23 8.06 -52.49 -0.42 1.81 16
34 H 0.13 1.53 8.06 -52.49 -0.42 1.10 16
35 H 0.15 0.69 8.14 -51.93 -0.42 0.27 16
36 H 0.13 1.81 4.53 -52.49 -0.24 1.58 16
37 H 0.14 2.64 4.81 -52.48 -0.25 2.39 16
LS Contribution 325.04 15.07 4.90 4.90
Total: -1.00 -31.44 325.04 -7.59 -39.03
By element:
Atomic # 1 Polarization: 7.66 SS G_CDS: -3.88 Total: 3.79 kcal
Atomic # 6 Polarization: -4.72 SS G_CDS: -1.67 Total: -6.39 kcal
Atomic # 7 Polarization: -32.44 SS G_CDS: 0.33 Total: -32.12 kcal
Atomic # 8 Polarization: -16.42 SS G_CDS: 0.09 Total: -16.33 kcal
Atomic # 9 Polarization: -3.99 SS G_CDS: 0.07 Total: -3.92 kcal
Atomic # 14 Polarization: 19.63 SS G_CDS: -5.05 Total: 14.58 kcal
Atomic # 16 Polarization: -1.16 SS G_CDS: -2.38 Total: -3.55 kcal
Total LS contribution 4.90 Total: 4.90 kcal
Total: -31.44 -7.59 -39.03 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000059934178.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -44.566 kcal
(2) G-P(sol) polarization free energy of solvation -31.444 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.010 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.590 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.034 kcal
(6) G-S(sol) free energy of system = (1) + (5) -83.600 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.67 seconds