Wall clock time and date at job start Tue Mar 31 2020 10:49:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52991 * 109.47305 * 2 1 4 4 N 1.46500 * 109.47327 * 186.52127 * 3 2 1 5 5 C 1.36908 * 120.00171 * 282.17048 * 4 3 2 6 6 H 1.07992 * 120.00431 * 235.17028 * 5 4 3 7 7 C 1.39015 * 119.99602 * 55.17431 * 5 4 3 8 8 N 1.31385 * 120.00050 * 41.07556 * 7 5 4 9 9 Si 1.86801 * 119.99902 * 221.08037 * 7 5 4 10 10 H 1.48505 * 109.47340 * 59.99639 * 9 7 5 11 11 H 1.48497 * 109.47411 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47004 * 300.00123 * 9 7 5 13 13 C 1.34777 * 120.00235 * 102.17232 * 4 3 2 14 14 O 1.21640 * 120.00284 * 187.29276 * 13 4 3 15 15 C 1.47375 * 119.99710 * 7.29961 * 13 4 3 16 16 C 1.39897 * 120.06908 * 128.22551 * 15 13 4 17 17 C 1.36605 * 119.92711 * 180.02562 * 16 15 13 18 18 C 1.39322 * 120.06897 * 359.97438 * 17 16 15 19 19 S 1.76192 * 119.92724 * 180.02562 * 18 17 16 20 20 C 1.81400 * 103.00016 * 179.97438 * 19 18 17 21 21 F 1.39902 * 109.47359 * 299.99966 * 20 19 18 22 22 F 1.39903 * 109.47062 * 60.00086 * 20 19 18 23 23 C 1.39319 * 120.13960 * 0.26861 * 18 17 16 24 24 C 1.36592 * 120.06839 * 359.45334 * 23 18 17 25 25 H 1.09005 * 109.47220 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47035 * 299.99840 * 1 2 3 27 27 H 1.08997 * 109.47108 * 60.00158 * 1 2 3 28 28 H 1.09003 * 109.47138 * 239.99423 * 2 1 3 29 29 H 1.09007 * 109.47108 * 120.00389 * 2 1 3 30 30 H 1.09002 * 109.47305 * 66.52205 * 3 2 1 31 31 H 1.08999 * 109.47129 * 306.51819 * 3 2 1 32 32 H 0.97012 * 119.99633 * 180.02562 * 8 7 5 33 33 H 1.07993 * 120.03725 * 359.97438 * 16 15 13 34 34 H 1.07996 * 119.96141 * 179.97438 * 17 16 15 35 35 H 1.08996 * 109.47522 * 179.97438 * 20 19 18 36 36 H 1.07996 * 119.96062 * 179.72650 * 23 18 17 37 37 H 1.08006 * 120.03620 * 180.24909 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.4966 1.4454 -0.1569 5 6 4.3008 1.1531 0.9119 6 1 5.0690 1.8487 1.2158 7 6 4.1286 -0.0391 1.6057 8 7 3.8901 -1.1523 0.9499 9 14 4.2363 -0.0584 3.4705 10 1 3.1968 0.8390 4.0357 11 1 4.0174 -1.4415 3.9647 12 1 5.5796 0.4122 3.8937 13 6 4.0450 1.7359 -1.3533 14 8 5.2433 1.6098 -1.5198 15 6 3.1927 2.2064 -2.4597 16 6 3.5229 3.3778 -3.1496 17 6 2.7306 3.8115 -4.1744 18 6 1.5951 3.0883 -4.5330 19 16 0.5761 3.6508 -5.8558 20 6 -0.7333 2.3973 -5.9238 21 9 -0.1662 1.1438 -6.1775 22 9 -1.4106 2.3636 -4.7001 23 6 1.2608 1.9242 -3.8446 24 6 2.0521 1.4822 -2.8227 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.7751 1.9215 0.9426 31 1 1.5846 1.9888 -0.8259 32 1 3.7696 -1.9842 1.4341 33 1 4.4028 3.9389 -2.8717 34 1 2.9848 4.7159 -4.7070 35 1 -1.4345 2.6470 -6.7200 36 1 0.3775 1.3682 -4.1222 37 1 1.7946 0.5774 -2.2920 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000059934178.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:54 Heat of formation + Delta-G solvation = -101.500118 kcal Electronic energy + Delta-G solvation = -24403.692625 eV Core-core repulsion = 20522.373255 eV Total energy + Delta-G solvation = -3881.319370 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.085 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.33383 -48.33891 -41.24359 -39.22153 -37.26059 -34.44076 -33.39653 -32.34719 -32.20157 -28.01023 -27.62986 -26.79868 -24.60159 -23.81601 -22.36843 -21.20966 -19.78200 -19.08274 -18.87814 -18.51225 -18.10182 -17.75735 -17.02541 -16.64526 -16.15130 -15.95751 -15.35194 -15.27568 -15.24402 -14.96659 -14.66724 -14.51451 -14.39133 -14.18313 -13.96006 -13.84719 -13.60275 -13.15522 -12.87219 -12.77435 -12.60263 -12.40539 -12.21954 -12.10482 -12.00381 -11.60498 -11.44687 -11.03985 -10.66360 -10.25703 -10.13626 -9.34785 -8.77526 -8.42080 -6.13567 -0.27339 -0.25869 0.27353 0.62934 1.37023 1.42837 1.52427 1.95698 2.29448 2.56178 2.78151 2.80415 3.02747 3.35207 3.42598 3.66413 3.74699 3.88358 4.17941 4.19558 4.33375 4.35011 4.47416 4.57220 4.71502 4.79487 4.86962 4.99465 5.05204 5.10468 5.25102 5.36757 5.38056 5.51797 5.64851 5.77007 6.27045 6.58160 7.17024 7.34497 8.06097 8.55063 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.021213 B = 0.004094 C = 0.003650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.644399 B = 6837.742711 C = 7669.951211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.129 4.129 3 C 0.107 3.893 4 N -0.440 5.440 5 C -0.394 4.394 6 H 0.056 0.944 7 C 0.045 3.955 8 N -0.838 5.838 9 Si 0.958 3.042 10 H -0.257 1.257 11 H -0.274 1.274 12 H -0.275 1.275 13 C 0.487 3.513 14 O -0.621 6.621 15 C -0.119 4.119 16 C -0.073 4.073 17 C -0.085 4.085 18 C -0.096 4.096 19 S -0.072 6.072 20 C 0.266 3.734 21 F -0.192 7.192 22 F -0.189 7.189 23 C -0.124 4.124 24 C -0.081 4.081 25 H 0.059 0.941 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.037 0.963 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.080 0.920 32 H 0.275 0.725 33 H 0.132 0.868 34 H 0.164 0.836 35 H 0.209 0.791 36 H 0.142 0.858 37 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.983 7.660 -12.490 21.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.167 4.167 3 C -0.016 4.016 4 N -0.157 5.157 5 C -0.520 4.520 6 H 0.074 0.926 7 C -0.166 4.166 8 N -0.469 5.469 9 Si 0.780 3.220 10 H -0.181 1.181 11 H -0.199 1.199 12 H -0.200 1.200 13 C 0.277 3.723 14 O -0.507 6.507 15 C -0.124 4.124 16 C -0.093 4.093 17 C -0.108 4.108 18 C -0.208 4.208 19 S 0.166 5.834 20 C 0.104 3.896 21 F -0.174 7.174 22 F -0.171 7.171 23 C -0.146 4.146 24 C -0.101 4.101 25 H 0.078 0.922 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.056 0.944 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.099 0.901 32 H 0.085 0.915 33 H 0.150 0.850 34 H 0.181 0.819 35 H 0.226 0.774 36 H 0.159 0.841 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -15.454 8.281 -13.281 21.995 hybrid contribution 0.700 -1.680 1.943 2.662 sum -14.754 6.601 -11.338 19.744 Atomic orbital electron populations 1.21740 0.93849 1.02053 1.02293 1.21969 0.95955 0.96435 1.02385 1.21952 0.80611 0.97487 1.01564 1.43571 1.05778 1.59776 1.06611 1.18850 1.21229 1.04303 1.07622 0.92639 1.26165 0.93784 0.92811 1.03848 1.70422 1.39363 0.98605 1.38536 0.85599 0.79472 0.77873 0.79019 1.18088 1.19890 1.19974 1.19307 0.87793 0.81779 0.83407 1.90581 1.18067 1.59208 1.82894 1.20342 0.96360 0.97820 0.97895 1.20975 0.99234 0.94523 0.94603 1.20632 0.92756 1.00524 0.96895 1.21936 0.99909 0.98732 1.00271 1.85994 1.24478 1.33513 1.39434 1.24920 0.93647 0.82747 0.88277 1.93113 1.85833 1.44359 1.94075 1.93110 1.80715 1.96357 1.46904 1.21104 1.00930 0.96162 0.96445 1.21199 0.92634 0.99581 0.96728 0.92182 0.91903 0.91967 0.94413 0.91763 0.91673 0.90147 0.91510 0.85050 0.81881 0.77438 0.84092 0.85158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.22 9.91 71.98 0.71 -3.50 16 2 C -0.13 -5.25 4.35 30.59 0.13 -5.12 16 3 C 0.11 4.55 4.79 86.38 0.41 4.96 16 4 N -0.44 -23.31 2.56 -639.33 -1.64 -24.94 16 5 C -0.39 -22.83 8.43 84.09 0.71 -22.12 16 6 H 0.06 3.44 8.06 -2.91 -0.02 3.42 16 7 C 0.04 2.38 4.01 84.95 0.34 2.72 16 8 N -0.84 -46.11 11.27 21.68 0.24 -45.86 16 9 Si 0.96 41.18 29.69 68.60 2.04 43.22 16 10 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 11 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 12 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 13 C 0.49 26.31 7.13 86.65 0.62 26.93 16 14 O -0.62 -39.35 17.03 -4.16 -0.07 -39.43 16 15 C -0.12 -5.01 4.94 -20.07 -0.10 -5.11 16 16 C -0.07 -2.56 9.69 22.29 0.22 -2.34 16 17 C -0.09 -2.32 9.73 22.15 0.22 -2.11 16 18 C -0.10 -2.52 6.13 22.79 0.14 -2.38 16 19 S -0.07 -1.26 22.16 -56.49 -1.25 -2.52 16 20 C 0.27 3.67 5.37 113.37 0.61 4.28 16 21 F -0.19 -3.67 15.65 44.97 0.70 -2.97 16 22 F -0.19 -3.43 15.62 44.97 0.70 -2.72 16 23 C -0.12 -3.67 8.62 22.15 0.19 -3.47 16 24 C -0.08 -2.98 7.37 22.29 0.16 -2.81 16 25 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 26 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.04 1.69 6.53 -2.39 -0.02 1.67 16 29 H 0.06 2.96 5.28 -2.38 -0.01 2.94 16 30 H 0.06 2.68 8.13 -2.39 -0.02 2.66 16 31 H 0.08 3.06 4.95 -2.39 -0.01 3.05 16 32 H 0.27 13.95 8.31 -92.70 -0.77 13.18 16 33 H 0.13 4.57 8.06 -2.91 -0.02 4.54 16 34 H 0.16 3.30 8.06 -2.91 -0.02 3.27 16 35 H 0.21 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.14 3.72 4.53 -2.91 -0.01 3.71 16 37 H 0.13 5.00 4.81 -2.91 -0.01 4.98 16 Total: -1.00 -73.93 325.04 6.21 -67.72 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: 1.12 Total: 17.57 kcal Atomic # 6 Polarization: -14.44 SS G_CDS: 4.36 Total: -10.08 kcal Atomic # 7 Polarization: -69.41 SS G_CDS: -1.39 Total: -70.81 kcal Atomic # 8 Polarization: -39.35 SS G_CDS: -0.07 Total: -39.43 kcal Atomic # 9 Polarization: -7.10 SS G_CDS: 1.41 Total: -5.69 kcal Atomic # 14 Polarization: 41.18 SS G_CDS: 2.04 Total: 43.22 kcal Atomic # 16 Polarization: -1.26 SS G_CDS: -1.25 Total: -2.52 kcal Total: -73.93 6.21 -67.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000059934178.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.776 kcal (2) G-P(sol) polarization free energy of solvation -73.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds