Wall clock time and date at job start Tue Mar 31 2020 11:11:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46967 * 2 1 4 4 S 1.81402 * 109.47175 * 120.00294 * 2 1 3 5 5 C 1.76201 * 102.99628 * 291.55690 * 4 2 1 6 6 C 1.38855 * 120.06283 * 354.51984 * 5 4 2 7 7 C 1.38149 * 119.96571 * 180.25657 * 6 5 4 8 8 C 1.38470 * 120.09375 * 359.43752 * 7 6 5 9 9 F 1.35092 * 119.94212 * 180.25858 * 8 7 6 10 10 C 1.38480 * 120.11723 * 0.56052 * 8 7 6 11 11 C 1.38267 * 120.03383 * 359.72240 * 10 8 7 12 12 F 1.35103 * 120.05138 * 179.97438 * 11 10 8 13 13 C 1.50700 * 109.46701 * 239.99885 * 2 1 3 14 14 O 1.21277 * 120.00620 * 264.99759 * 13 2 1 15 15 N 1.34779 * 119.99593 * 85.00183 * 13 2 1 16 16 C 1.46500 * 120.00294 * 359.97438 * 15 13 2 17 17 C 1.46502 * 119.99966 * 179.97438 * 15 13 2 18 18 C 1.50700 * 109.47035 * 89.99843 * 17 15 13 19 19 H 1.08002 * 119.99721 * 0.02562 * 18 17 15 20 20 C 1.37873 * 120.00095 * 179.97438 * 18 17 15 21 21 N 1.31510 * 120.00166 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 120.00039 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47077 * 90.00237 * 22 20 18 24 24 H 1.48499 * 109.46893 * 209.99950 * 22 20 18 25 25 H 1.48499 * 109.47159 * 329.99817 * 22 20 18 26 26 H 1.08998 * 109.47601 * 186.01370 * 1 2 3 27 27 H 1.09003 * 109.46876 * 306.00968 * 1 2 3 28 28 H 1.09002 * 109.47318 * 66.00716 * 1 2 3 29 29 H 1.08000 * 120.01541 * 359.97438 * 6 5 4 30 30 H 1.08001 * 119.95590 * 179.69960 * 7 6 5 31 31 H 1.08005 * 119.98346 * 179.74550 * 10 8 7 32 32 H 1.09005 * 109.47072 * 89.99779 * 16 15 13 33 33 H 1.08997 * 109.47410 * 209.99964 * 16 15 13 34 34 H 1.08995 * 109.46998 * 330.00422 * 16 15 13 35 35 H 1.09001 * 109.47171 * 210.00211 * 17 15 13 36 36 H 1.09002 * 109.46778 * 330.00084 * 17 15 13 37 37 H 0.97000 * 120.00290 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 16 2.1347 -0.8552 1.4811 5 6 1.6720 0.2356 2.7852 6 6 1.1083 1.4703 2.4922 7 6 0.7512 2.3262 3.5162 8 6 0.9438 1.9499 4.8347 9 9 0.5887 2.7871 5.8337 10 6 1.5057 0.7194 5.1311 11 6 1.8704 -0.1388 4.1102 12 9 2.4191 -1.3392 4.3990 13 6 2.0322 -0.7105 -1.2305 14 8 2.3207 -1.8872 -1.1761 15 7 2.1609 -0.0380 -2.3914 16 6 1.8120 1.3833 -2.4573 17 6 2.6497 -0.7285 -3.5876 18 6 1.4829 -1.3088 -4.3445 19 1 0.4779 -1.1762 -3.9721 20 6 1.6985 -2.0081 -5.5130 21 7 2.9223 -2.1692 -5.9668 22 14 0.2522 -2.7269 -6.4517 23 1 -0.2461 -1.7296 -7.4326 24 1 0.6875 -3.9521 -7.1692 25 1 -0.8343 -3.0706 -5.4996 26 1 -0.3634 -1.0220 0.1077 27 1 -0.3633 0.6042 0.8313 28 1 -0.3634 0.4179 -0.9389 29 1 0.9533 1.7632 1.4643 30 1 0.3172 3.2885 3.2880 31 1 1.6588 0.4298 6.1603 32 1 2.6906 1.9843 -2.2227 33 1 1.4635 1.6257 -3.4612 34 1 1.0225 1.5974 -1.7370 35 1 3.1801 -0.0206 -4.2244 36 1 3.3267 -1.5303 -3.2930 37 1 3.0740 -2.6615 -6.7887 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072850538.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:22 Heat of formation + Delta-G solvation = -91.165035 kcal Electronic energy + Delta-G solvation = -23295.074503 eV Core-core repulsion = 19414.203295 eV Total energy + Delta-G solvation = -3880.871207 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.085 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.29780 -49.19943 -39.31044 -38.98347 -35.01751 -33.65694 -32.47144 -31.18493 -30.67976 -27.91601 -26.14087 -24.55150 -23.66844 -23.37526 -22.47037 -19.26378 -18.44993 -17.64364 -17.42344 -16.87147 -16.61361 -16.28301 -16.10787 -15.57326 -15.53698 -14.97786 -14.88402 -14.56475 -14.36442 -14.12523 -13.69776 -13.26204 -13.07614 -12.73063 -12.61190 -12.28013 -12.18262 -12.08692 -11.90738 -11.87169 -11.52653 -11.27200 -10.95593 -10.65362 -10.23295 -10.15065 -9.94459 -9.72281 -9.40245 -9.15777 -8.50207 -7.82425 -7.51150 -6.11087 -4.16556 0.49233 0.61582 1.15090 2.16263 2.91812 3.14646 3.25911 3.33424 3.37514 3.52933 3.72282 4.04272 4.17314 4.38110 4.45568 4.67119 4.69526 4.78537 4.93988 5.16402 5.23670 5.36640 5.40825 5.44376 5.49493 5.54649 5.58294 5.65263 5.75941 5.99439 6.10652 6.33070 6.88860 7.32020 7.38173 7.83908 8.13401 8.18908 8.73741 8.90484 9.48783 10.97130 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.028064 B = 0.002944 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.470962 B = 9509.589445 C = 9892.370364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.121 4.121 3 H 0.111 0.889 4 S -0.002 6.002 5 C -0.143 4.143 6 C -0.086 4.086 7 C -0.140 4.140 8 C 0.114 3.886 9 F -0.133 7.133 10 C -0.171 4.171 11 C 0.143 3.857 12 F -0.120 7.120 13 C 0.527 3.473 14 O -0.520 6.520 15 N -0.593 5.593 16 C 0.076 3.924 17 C 0.246 3.754 18 C -0.530 4.530 19 H 0.058 0.942 20 C 0.062 3.938 21 N -0.893 5.893 22 Si 0.899 3.101 23 H -0.280 1.280 24 H -0.284 1.284 25 H -0.274 1.274 26 H 0.080 0.920 27 H 0.069 0.931 28 H 0.078 0.922 29 H 0.147 0.853 30 H 0.145 0.855 31 H 0.152 0.848 32 H 0.048 0.952 33 H 0.079 0.921 34 H 0.058 0.942 35 H 0.036 0.964 36 H 0.046 0.954 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.529 12.033 19.043 22.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.253 4.253 3 H 0.129 0.871 4 S 0.245 5.755 5 C -0.258 4.258 6 C -0.110 4.110 7 C -0.160 4.160 8 C 0.091 3.909 9 F -0.111 7.111 10 C -0.192 4.192 11 C 0.117 3.883 12 F -0.098 7.098 13 C 0.310 3.690 14 O -0.396 6.396 15 N -0.325 5.325 16 C -0.068 4.068 17 C 0.127 3.873 18 C -0.568 4.568 19 H 0.076 0.924 20 C -0.140 4.140 21 N -0.532 5.532 22 Si 0.726 3.274 23 H -0.206 1.206 24 H -0.210 1.210 25 H -0.198 1.198 26 H 0.099 0.901 27 H 0.088 0.912 28 H 0.097 0.903 29 H 0.164 0.836 30 H 0.163 0.837 31 H 0.169 0.831 32 H 0.066 0.934 33 H 0.098 0.902 34 H 0.076 0.924 35 H 0.054 0.946 36 H 0.064 0.936 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.631 10.164 18.822 21.697 hybrid contribution -1.409 0.949 -0.426 1.751 sum -5.039 11.113 18.396 22.075 Atomic orbital electron populations 1.22121 0.90483 1.04775 1.03345 1.23856 1.01586 1.03659 0.96225 0.87111 1.86558 1.70579 1.24661 0.93681 1.22359 1.05920 1.00316 0.97168 1.21032 0.98151 0.91553 1.00280 1.21107 1.02878 1.01520 0.90543 1.17219 1.00172 0.88498 0.84964 1.91526 1.89620 1.70104 1.59887 1.20925 1.03977 0.93874 1.00416 1.16621 0.98455 0.82364 0.90853 1.91571 1.82582 1.41760 1.93872 1.19198 0.79539 0.87060 0.83227 1.90734 1.49597 1.15073 1.84217 1.48079 1.63803 1.09903 1.10694 1.21771 0.99284 0.82303 1.03417 1.19376 0.95403 0.92839 0.79673 1.21391 0.93321 1.34876 1.07247 0.92391 1.24934 0.95980 0.95830 0.97289 1.69923 1.19643 1.41363 1.22265 0.86483 0.82427 0.78701 0.79745 1.20609 1.21013 1.19843 0.90146 0.91219 0.90296 0.83561 0.83707 0.83068 0.93390 0.90209 0.92376 0.94631 0.93616 0.92593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 8.47 37.16 0.31 -1.46 16 2 C -0.12 -1.70 1.55 -27.88 -0.04 -1.74 16 3 H 0.11 1.23 5.75 -51.92 -0.30 0.93 16 4 S 0.00 -0.03 20.23 -107.50 -2.17 -2.20 16 5 C -0.14 -1.67 6.05 -39.03 -0.24 -1.91 16 6 C -0.09 -0.78 8.05 -39.39 -0.32 -1.10 16 7 C -0.14 -1.12 10.02 -39.53 -0.40 -1.51 16 8 C 0.11 1.02 7.30 -39.41 -0.29 0.74 16 9 F -0.13 -1.22 17.26 2.25 0.04 -1.18 16 10 C -0.17 -1.59 10.00 -39.48 -0.39 -1.99 16 11 C 0.14 1.64 7.28 -39.25 -0.29 1.35 16 12 F -0.12 -1.53 16.76 2.25 0.04 -1.49 16 13 C 0.53 10.47 6.79 -10.98 -0.07 10.39 16 14 O -0.52 -12.82 15.72 5.56 0.09 -12.73 16 15 N -0.59 -11.87 2.86 -182.95 -0.52 -12.39 16 16 C 0.08 1.08 9.87 59.85 0.59 1.67 16 17 C 0.25 6.22 5.16 -5.19 -0.03 6.19 16 18 C -0.53 -14.57 9.39 -34.44 -0.32 -14.89 16 19 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 20 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 21 N -0.89 -26.10 13.29 55.43 0.74 -25.36 16 22 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 24 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 26 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 27 H 0.07 0.63 5.78 -51.93 -0.30 0.33 16 28 H 0.08 0.91 6.98 -51.93 -0.36 0.55 16 29 H 0.15 1.11 4.75 -52.49 -0.25 0.86 16 30 H 0.15 0.80 8.06 -52.49 -0.42 0.38 16 31 H 0.15 1.11 8.06 -52.48 -0.42 0.69 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.08 1.17 8.07 -51.93 -0.42 0.75 16 34 H 0.06 0.64 5.24 -51.93 -0.27 0.36 16 35 H 0.04 0.90 8.07 -51.93 -0.42 0.49 16 36 H 0.05 1.32 7.42 -51.93 -0.39 0.93 16 37 H 0.26 7.29 8.31 -40.82 -0.34 6.96 16 LS Contribution 332.91 15.07 5.02 5.02 Total: -1.00 -32.52 332.91 -7.32 -39.84 By element: Atomic # 1 Polarization: 0.65 SS G_CDS: -3.94 Total: -3.29 kcal Atomic # 6 Polarization: -1.04 SS G_CDS: -1.58 Total: -2.61 kcal Atomic # 7 Polarization: -37.96 SS G_CDS: 0.21 Total: -37.75 kcal Atomic # 8 Polarization: -12.82 SS G_CDS: 0.09 Total: -12.73 kcal Atomic # 9 Polarization: -2.75 SS G_CDS: 0.08 Total: -2.68 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: -0.03 SS G_CDS: -2.17 Total: -2.20 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.52 -7.32 -39.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072850538.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.322 kcal (2) G-P(sol) polarization free energy of solvation -32.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds