Wall clock time and date at job start Tue Mar 31 2020 11:11:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46967 * 2 1 4 4 S 1.81402 * 109.47175 * 120.00294 * 2 1 3 5 5 C 1.76201 * 102.99628 * 291.55690 * 4 2 1 6 6 C 1.38855 * 120.06283 * 354.51984 * 5 4 2 7 7 C 1.38149 * 119.96571 * 180.25657 * 6 5 4 8 8 C 1.38470 * 120.09375 * 359.43752 * 7 6 5 9 9 F 1.35092 * 119.94212 * 180.25858 * 8 7 6 10 10 C 1.38480 * 120.11723 * 0.56052 * 8 7 6 11 11 C 1.38267 * 120.03383 * 359.72240 * 10 8 7 12 12 F 1.35103 * 120.05138 * 179.97438 * 11 10 8 13 13 C 1.50700 * 109.46701 * 239.99885 * 2 1 3 14 14 O 1.21277 * 120.00620 * 264.99759 * 13 2 1 15 15 N 1.34779 * 119.99593 * 85.00183 * 13 2 1 16 16 C 1.46500 * 120.00294 * 359.97438 * 15 13 2 17 17 C 1.46502 * 119.99966 * 179.97438 * 15 13 2 18 18 C 1.50700 * 109.47035 * 89.99843 * 17 15 13 19 19 H 1.08002 * 119.99721 * 0.02562 * 18 17 15 20 20 C 1.37873 * 120.00095 * 179.97438 * 18 17 15 21 21 N 1.31510 * 120.00166 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 120.00039 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47077 * 90.00237 * 22 20 18 24 24 H 1.48499 * 109.46893 * 209.99950 * 22 20 18 25 25 H 1.48499 * 109.47159 * 329.99817 * 22 20 18 26 26 H 1.08998 * 109.47601 * 186.01370 * 1 2 3 27 27 H 1.09003 * 109.46876 * 306.00968 * 1 2 3 28 28 H 1.09002 * 109.47318 * 66.00716 * 1 2 3 29 29 H 1.08000 * 120.01541 * 359.97438 * 6 5 4 30 30 H 1.08001 * 119.95590 * 179.69960 * 7 6 5 31 31 H 1.08005 * 119.98346 * 179.74550 * 10 8 7 32 32 H 1.09005 * 109.47072 * 89.99779 * 16 15 13 33 33 H 1.08997 * 109.47410 * 209.99964 * 16 15 13 34 34 H 1.08995 * 109.46998 * 330.00422 * 16 15 13 35 35 H 1.09001 * 109.47171 * 210.00211 * 17 15 13 36 36 H 1.09002 * 109.46778 * 330.00084 * 17 15 13 37 37 H 0.97000 * 120.00290 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 16 2.1347 -0.8552 1.4811 5 6 1.6720 0.2356 2.7852 6 6 1.1083 1.4703 2.4922 7 6 0.7512 2.3262 3.5162 8 6 0.9438 1.9499 4.8347 9 9 0.5887 2.7871 5.8337 10 6 1.5057 0.7194 5.1311 11 6 1.8704 -0.1388 4.1102 12 9 2.4191 -1.3392 4.3990 13 6 2.0322 -0.7105 -1.2305 14 8 2.3207 -1.8872 -1.1761 15 7 2.1609 -0.0380 -2.3914 16 6 1.8120 1.3833 -2.4573 17 6 2.6497 -0.7285 -3.5876 18 6 1.4829 -1.3088 -4.3445 19 1 0.4779 -1.1762 -3.9721 20 6 1.6985 -2.0081 -5.5130 21 7 2.9223 -2.1692 -5.9668 22 14 0.2522 -2.7269 -6.4517 23 1 -0.2461 -1.7296 -7.4326 24 1 0.6875 -3.9521 -7.1692 25 1 -0.8343 -3.0706 -5.4996 26 1 -0.3634 -1.0220 0.1077 27 1 -0.3633 0.6042 0.8313 28 1 -0.3634 0.4179 -0.9389 29 1 0.9533 1.7632 1.4643 30 1 0.3172 3.2885 3.2880 31 1 1.6588 0.4298 6.1603 32 1 2.6906 1.9843 -2.2227 33 1 1.4635 1.6257 -3.4612 34 1 1.0225 1.5974 -1.7370 35 1 3.1801 -0.0206 -4.2244 36 1 3.3267 -1.5303 -3.2930 37 1 3.0740 -2.6615 -6.7887 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072850538.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:21 Heat of formation + Delta-G solvation = -110.545730 kcal Electronic energy + Delta-G solvation = -23295.914913 eV Core-core repulsion = 19414.203295 eV Total energy + Delta-G solvation = -3881.711617 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.085 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.09685 -49.99962 -40.85440 -39.75104 -36.70600 -35.13392 -34.19205 -31.99314 -31.43415 -29.75616 -27.50974 -26.03427 -24.55595 -24.27245 -23.90244 -20.56221 -19.41418 -18.69946 -18.66050 -18.21061 -18.20001 -17.17088 -17.08037 -16.77952 -16.36910 -16.35749 -16.28441 -15.90133 -15.30051 -15.27203 -14.73231 -14.54326 -14.28492 -13.96939 -13.68906 -13.52661 -13.45088 -13.38701 -13.11117 -12.98681 -12.88909 -12.73918 -12.52264 -12.36626 -12.21089 -11.72914 -11.16700 -10.77281 -10.75854 -10.64862 -10.11933 -9.50878 -8.55942 -8.23691 -6.38381 -0.26937 -0.09831 0.08683 1.15928 1.36725 1.40118 1.49779 1.67538 2.19890 2.22417 2.40247 2.77811 3.06738 3.29371 3.42303 3.48680 3.70125 3.80014 3.84355 4.05347 4.33898 4.46564 4.55692 4.59434 4.66404 4.68976 4.76437 4.89742 4.91203 4.94602 4.96926 5.12945 5.20410 5.51589 5.62544 5.77840 6.02916 6.59321 6.71511 7.20791 7.36173 8.83719 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.028064 B = 0.002944 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.470962 B = 9509.589445 C = 9892.370364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.096 4.096 3 H 0.149 0.851 4 S -0.075 6.075 5 C -0.145 4.145 6 C -0.080 4.080 7 C -0.124 4.124 8 C 0.116 3.884 9 F -0.132 7.132 10 C -0.167 4.167 11 C 0.122 3.878 12 F -0.136 7.136 13 C 0.516 3.484 14 O -0.582 6.582 15 N -0.599 5.599 16 C 0.067 3.933 17 C 0.259 3.741 18 C -0.542 4.542 19 H 0.057 0.943 20 C 0.007 3.993 21 N -0.929 5.929 22 Si 0.967 3.033 23 H -0.262 1.262 24 H -0.284 1.284 25 H -0.272 1.272 26 H 0.057 0.943 27 H 0.107 0.893 28 H 0.088 0.912 29 H 0.169 0.831 30 H 0.180 0.820 31 H 0.167 0.833 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.099 0.901 35 H 0.029 0.971 36 H -0.003 1.003 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.859 15.157 19.990 26.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.227 4.227 3 H 0.167 0.833 4 S 0.170 5.830 5 C -0.259 4.259 6 C -0.104 4.104 7 C -0.144 4.144 8 C 0.093 3.907 9 F -0.110 7.110 10 C -0.188 4.188 11 C 0.097 3.903 12 F -0.115 7.115 13 C 0.302 3.698 14 O -0.462 6.462 15 N -0.330 5.330 16 C -0.074 4.074 17 C 0.138 3.862 18 C -0.581 4.581 19 H 0.075 0.925 20 C -0.192 4.192 21 N -0.569 5.569 22 Si 0.792 3.208 23 H -0.186 1.186 24 H -0.210 1.210 25 H -0.197 1.197 26 H 0.076 0.924 27 H 0.126 0.874 28 H 0.107 0.893 29 H 0.186 0.814 30 H 0.197 0.803 31 H 0.184 0.816 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.118 0.882 35 H 0.047 0.953 36 H 0.015 0.985 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.983 13.361 19.798 24.623 hybrid contribution -0.657 0.059 -0.597 0.889 sum -6.640 13.421 19.202 24.350 Atomic orbital electron populations 1.22169 0.88482 1.04343 1.05378 1.23656 1.02729 1.04014 0.92329 0.83315 1.86880 1.72209 1.27653 0.96242 1.22206 1.07546 1.00693 0.95503 1.21288 0.97057 0.90302 1.01727 1.21440 1.01200 1.02330 0.89453 1.17357 0.99612 0.88146 0.85553 1.91540 1.89524 1.69950 1.60017 1.21064 1.03302 0.93760 1.00709 1.16891 0.99576 0.82418 0.91451 1.91528 1.83074 1.42858 1.94000 1.20156 0.78305 0.86660 0.84655 1.90699 1.52003 1.18079 1.85435 1.48060 1.63445 1.12145 1.09316 1.22139 1.01906 0.78806 1.04589 1.18821 0.94178 0.91760 0.81438 1.21688 0.93723 1.35067 1.07573 0.92471 1.25859 0.98748 0.96171 0.98398 1.70048 1.21785 1.42195 1.22841 0.85416 0.78832 0.78115 0.78467 1.18637 1.20950 1.19665 0.92422 0.87443 0.89333 0.81405 0.80280 0.81564 0.90655 0.90771 0.88232 0.95254 0.98520 0.92401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.06 8.47 71.98 0.61 -2.45 16 2 C -0.10 -2.52 1.55 29.85 0.05 -2.48 16 3 H 0.15 2.70 5.75 -2.39 -0.01 2.69 16 4 S -0.08 -2.25 20.23 -56.49 -1.14 -3.39 16 5 C -0.15 -3.14 6.05 22.63 0.14 -3.00 16 6 C -0.08 -1.13 8.05 22.40 0.18 -0.95 16 7 C -0.12 -1.37 10.02 22.30 0.22 -1.15 16 8 C 0.12 1.65 7.30 22.38 0.16 1.82 16 9 F -0.13 -1.95 17.26 44.97 0.78 -1.18 16 10 C -0.17 -2.76 10.00 22.33 0.22 -2.54 16 11 C 0.12 2.68 7.28 22.49 0.16 2.84 16 12 F -0.14 -3.57 16.76 44.97 0.75 -2.82 16 13 C 0.52 20.76 6.79 87.66 0.60 21.36 16 14 O -0.58 -30.32 15.72 -3.02 -0.05 -30.37 16 15 N -0.60 -23.96 2.86 -851.13 -2.43 -26.39 16 16 C 0.07 1.73 9.87 127.77 1.26 2.99 16 17 C 0.26 13.64 5.16 85.63 0.44 14.08 16 18 C -0.54 -30.45 9.39 25.60 0.24 -30.21 16 19 H 0.06 3.14 7.81 -2.91 -0.02 3.12 16 20 C 0.01 0.41 5.46 84.65 0.46 0.88 16 21 N -0.93 -55.74 13.29 21.45 0.28 -55.45 16 22 Si 0.97 44.19 29.54 68.60 2.03 46.21 16 23 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 24 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 25 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 26 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.11 1.45 5.78 -2.39 -0.01 1.44 16 28 H 0.09 1.72 6.98 -2.39 -0.02 1.70 16 29 H 0.17 1.58 4.75 -2.91 -0.01 1.57 16 30 H 0.18 0.82 8.06 -2.91 -0.02 0.80 16 31 H 0.17 2.13 8.06 -2.91 -0.02 2.10 16 32 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 33 H 0.07 2.02 8.07 -2.39 -0.02 2.00 16 34 H 0.10 1.71 5.24 -2.39 -0.01 1.70 16 35 H 0.03 1.55 8.07 -2.39 -0.02 1.53 16 36 H 0.00 -0.21 7.42 -2.39 -0.02 -0.22 16 37 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 Total: -1.00 -76.63 332.91 6.08 -70.55 By element: Atomic # 1 Polarization: 0.53 SS G_CDS: 1.11 Total: 1.65 kcal Atomic # 6 Polarization: -3.55 SS G_CDS: 4.75 Total: 1.20 kcal Atomic # 7 Polarization: -79.70 SS G_CDS: -2.15 Total: -81.85 kcal Atomic # 8 Polarization: -30.32 SS G_CDS: -0.05 Total: -30.37 kcal Atomic # 9 Polarization: -5.52 SS G_CDS: 1.53 Total: -3.99 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.21 kcal Atomic # 16 Polarization: -2.25 SS G_CDS: -1.14 Total: -3.39 kcal Total: -76.63 6.08 -70.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072850538.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.997 kcal (2) G-P(sol) polarization free energy of solvation -76.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds