Wall clock time and date at job start Tue Mar 31 2020 11:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42894 * 114.00004 * 2 1 4 4 C 1.52994 * 109.47247 * 179.97438 * 3 2 1 5 5 S 1.81397 * 109.47318 * 179.97438 * 4 3 2 6 6 O 1.42096 * 110.54546 * 68.37683 * 5 4 3 7 7 O 1.42099 * 110.54582 * 291.62366 * 5 4 3 8 8 N 1.65602 * 104.45139 * 179.97438 * 5 4 3 9 9 C 1.46505 * 119.99755 * 65.00191 * 8 5 4 10 10 C 1.50699 * 109.46837 * 165.00307 * 9 8 5 11 11 C 1.38305 * 119.93408 * 89.99748 * 10 9 8 12 12 C 1.38101 * 120.07071 * 179.97438 * 11 10 9 13 13 C 1.38876 * 119.92956 * 0.02562 * 12 11 10 14 14 O 1.35750 * 120.06861 * 180.02562 * 13 12 11 15 15 C 1.34828 * 117.00075 * 5.53840 * 14 13 12 16 16 H 1.08003 * 120.00029 * 354.94359 * 15 14 13 17 17 C 1.38659 * 120.00122 * 174.94542 * 15 14 13 18 18 N 1.31558 * 119.99705 * 180.02562 * 17 15 14 19 19 Si 1.86795 * 120.00035 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.47181 * 89.99980 * 19 17 15 21 21 H 1.48498 * 109.47260 * 210.00361 * 19 17 15 22 22 H 1.48502 * 109.47130 * 330.00179 * 19 17 15 23 23 C 1.38880 * 119.86555 * 0.27954 * 13 12 11 24 24 C 1.38102 * 119.92551 * 359.44514 * 23 13 12 25 25 H 1.09001 * 109.46940 * 180.02562 * 1 2 3 26 26 H 1.08993 * 109.47088 * 300.00419 * 1 2 3 27 27 H 1.09000 * 109.46899 * 60.00500 * 1 2 3 28 28 H 1.09000 * 109.47580 * 59.99383 * 3 2 1 29 29 H 1.09009 * 109.46694 * 299.99633 * 3 2 1 30 30 H 1.09000 * 109.47377 * 59.99841 * 4 3 2 31 31 H 1.08998 * 109.47569 * 299.99684 * 4 3 2 32 32 H 0.96998 * 120.00343 * 245.00345 * 8 5 4 33 33 H 1.08986 * 109.47314 * 44.99897 * 9 8 5 34 34 H 1.09005 * 109.46923 * 284.99642 * 9 8 5 35 35 H 1.07999 * 119.96326 * 0.02562 * 11 10 9 36 36 H 1.07997 * 120.03156 * 180.02562 * 12 11 10 37 37 H 0.96997 * 119.99350 * 179.97438 * 18 17 15 38 38 H 1.07996 * 120.04097 * 179.72435 * 23 13 12 39 39 H 1.07997 * 119.96688 * 180.27743 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 16 4.2733 2.8418 -0.0001 6 8 4.0277 3.4975 1.2363 7 8 4.0286 3.4960 -1.2376 8 7 5.9063 2.5670 0.0014 9 6 6.5406 1.9158 -1.1475 10 6 8.0332 2.1103 -1.0742 11 6 8.8179 1.1853 -0.4100 12 6 10.1861 1.3605 -0.3415 13 6 10.7737 2.4672 -0.9402 14 8 12.1184 2.6419 -0.8751 15 6 12.8383 1.6488 -0.3154 16 1 12.3361 0.8024 0.1296 17 6 14.2233 1.7140 -0.3110 18 7 14.9257 0.7447 0.2347 19 14 15.0919 3.1775 -1.0811 20 1 15.2867 4.2335 -0.0554 21 1 16.4127 2.7487 -1.6071 22 1 14.2667 3.7139 -2.1931 23 6 9.9824 3.3977 -1.6010 24 6 8.6155 3.2139 -1.6709 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.6886 1.8464 0.8899 29 1 1.6886 1.8463 -0.8901 30 1 3.8575 0.6435 -0.8891 31 1 3.8568 0.6439 0.8908 32 1 6.4430 2.8372 0.7629 33 1 6.1617 2.3562 -2.0696 34 1 6.3120 0.8501 -1.1330 35 1 8.3604 0.3246 0.0550 36 1 10.7983 0.6375 0.1770 37 1 15.8946 0.7902 0.2374 38 1 10.4359 4.2617 -2.0637 39 1 8.0000 3.9347 -2.1885 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076008118.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:08 Heat of formation + Delta-G solvation = -117.854465 kcal Electronic energy + Delta-G solvation = -23132.215749 eV Core-core repulsion = 19361.274716 eV Total energy + Delta-G solvation = -3770.941032 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.102 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.35905 -38.43235 -37.43953 -37.17969 -36.18230 -34.80640 -32.46948 -32.37773 -30.38773 -29.74569 -27.01991 -25.94897 -24.41808 -23.89035 -22.19594 -20.69290 -19.54482 -18.18771 -17.94194 -17.49930 -17.12028 -16.89734 -16.25677 -16.14311 -15.38228 -15.09253 -15.05194 -14.55361 -14.18582 -14.00446 -13.89951 -13.59399 -13.28714 -12.81355 -12.69893 -12.53900 -12.35952 -12.29345 -12.24191 -12.21051 -12.14489 -11.89739 -11.39257 -11.22555 -10.91230 -10.83280 -10.76717 -10.24903 -10.22865 -9.61245 -9.47234 -8.95961 -8.38328 -7.48604 -6.50519 -4.17314 -0.05968 1.93024 2.02601 2.61114 3.16126 3.18447 3.20739 3.34817 3.66897 3.91220 4.15302 4.16548 4.33937 4.40180 4.65212 4.73119 4.84916 4.86054 4.88412 5.01929 5.03616 5.17077 5.20845 5.26268 5.44767 5.53150 5.66427 5.85203 6.02825 6.22299 6.45298 6.54747 6.67261 6.84186 6.95826 7.10951 7.17610 7.49577 7.69842 7.93739 8.84081 9.44929 10.56582 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.033345 B = 0.002330 C = 0.002250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.504172 B =12015.426920 C =12443.508590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.382 6.382 3 C 0.074 3.926 4 C -0.640 4.640 5 S 2.620 3.380 6 O -0.957 6.957 7 O -0.952 6.952 8 N -1.109 6.109 9 C 0.170 3.830 10 C -0.198 4.198 11 C -0.055 4.055 12 C -0.225 4.225 13 C 0.166 3.834 14 O -0.213 6.213 15 C -0.391 4.391 16 H 0.108 0.892 17 C 0.064 3.936 18 N -0.875 5.875 19 Si 0.907 3.093 20 H -0.273 1.273 21 H -0.282 1.282 22 H -0.259 1.259 23 C -0.195 4.195 24 C -0.055 4.055 25 H 0.090 0.910 26 H 0.045 0.955 27 H 0.046 0.954 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.140 0.860 31 H 0.142 0.858 32 H 0.422 0.578 33 H 0.081 0.919 34 H 0.065 0.935 35 H 0.112 0.888 36 H 0.134 0.866 37 H 0.281 0.719 38 H 0.119 0.881 39 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.137 -0.198 -1.309 24.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.301 6.301 3 C -0.004 4.004 4 C -0.767 4.767 5 S 2.709 3.291 6 O -0.947 6.947 7 O -0.942 6.942 8 N -0.870 5.870 9 C 0.045 3.955 10 C -0.201 4.201 11 C -0.074 4.074 12 C -0.244 4.244 13 C 0.113 3.887 14 O -0.117 6.117 15 C -0.466 4.466 16 H 0.125 0.875 17 C -0.140 4.140 18 N -0.512 5.512 19 Si 0.732 3.268 20 H -0.198 1.198 21 H -0.207 1.207 22 H -0.183 1.183 23 C -0.214 4.214 24 C -0.074 4.074 25 H 0.109 0.891 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.159 0.841 31 H 0.160 0.840 32 H 0.258 0.742 33 H 0.099 0.901 34 H 0.083 0.917 35 H 0.130 0.870 36 H 0.152 0.848 37 H 0.091 0.909 38 H 0.137 0.863 39 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -24.197 0.482 -1.496 24.248 hybrid contribution 0.713 -0.168 0.192 0.757 sum -23.484 0.315 -1.304 23.522 Atomic orbital electron populations 1.22849 0.80413 1.03322 1.00480 1.87941 1.20165 1.26495 1.95486 1.22045 0.89910 0.86706 1.01722 1.30878 1.05313 1.27489 1.13008 1.04702 0.73871 0.76116 0.74371 1.93614 1.84345 1.71594 1.45188 1.93614 1.84526 1.70473 1.45561 1.55694 1.25447 1.77102 1.28788 1.20059 0.91489 0.96264 0.87642 1.19130 0.93090 0.99256 1.08593 1.20685 0.93114 0.97298 0.96286 1.21271 0.95058 1.00991 1.07061 1.19195 0.84011 0.93028 0.92460 1.83574 1.13970 1.43217 1.70942 1.20785 0.89252 1.00399 1.36210 0.87495 1.24497 0.95229 0.98027 0.96251 1.69643 1.07547 1.31616 1.42434 0.86162 0.78594 0.81607 0.80445 1.19806 1.20728 1.18299 1.20229 0.93036 1.01451 1.06676 1.20578 0.93550 0.95993 0.97285 0.89121 0.93608 0.93579 0.91674 0.91617 0.84126 0.83994 0.74234 0.90056 0.91695 0.87021 0.84793 0.90908 0.86327 0.86513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 11.01 101.05 1.11 1.26 16 2 O -0.38 -3.45 10.70 -35.23 -0.38 -3.83 16 3 C 0.07 0.58 5.95 37.15 0.22 0.81 16 4 C -0.64 -4.65 6.44 37.15 0.24 -4.41 16 5 S 2.62 25.41 5.46 -107.50 -0.59 24.82 16 6 O -0.96 -12.15 18.08 -57.54 -1.04 -13.19 16 7 O -0.95 -12.04 17.50 -57.54 -1.01 -13.05 16 8 N -1.11 -11.10 5.88 -11.66 -0.07 -11.16 16 9 C 0.17 1.83 6.25 -5.19 -0.03 1.79 16 10 C -0.20 -2.86 5.28 -104.57 -0.55 -3.41 16 11 C -0.05 -0.87 9.69 -39.61 -0.38 -1.26 16 12 C -0.22 -4.48 9.17 -39.40 -0.36 -4.84 16 13 C 0.17 3.63 6.65 -39.11 -0.26 3.37 16 14 O -0.21 -5.40 8.59 0.05 0.00 -5.40 16 15 C -0.39 -10.63 9.95 30.89 0.31 -10.33 16 16 H 0.11 2.95 5.44 -52.48 -0.29 2.67 16 17 C 0.06 1.75 5.49 -17.51 -0.10 1.65 16 18 N -0.88 -24.61 13.96 55.48 0.77 -23.84 16 19 Si 0.91 21.12 28.62 -169.99 -4.86 16.26 16 20 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 21 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 22 H -0.26 -6.05 7.11 56.52 0.40 -5.65 16 23 C -0.19 -3.63 9.99 -39.39 -0.39 -4.02 16 24 C -0.06 -0.86 9.69 -39.61 -0.38 -1.25 16 25 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.05 0.22 8.14 -51.93 -0.42 -0.21 16 27 H 0.05 0.22 8.14 -51.93 -0.42 -0.21 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.44 8.14 -51.92 -0.42 0.01 16 30 H 0.14 0.85 8.14 -51.92 -0.42 0.43 16 31 H 0.14 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.42 4.22 8.61 -34.47 -0.30 3.93 16 33 H 0.08 0.83 7.64 -51.94 -0.40 0.43 16 34 H 0.06 0.54 8.08 -51.93 -0.42 0.12 16 35 H 0.11 1.47 8.06 -52.49 -0.42 1.04 16 36 H 0.13 2.83 5.64 -52.49 -0.30 2.54 16 37 H 0.28 7.29 8.31 -40.82 -0.34 6.95 16 38 H 0.12 2.08 8.06 -52.49 -0.42 1.66 16 39 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 LS Contribution 350.54 15.07 5.28 5.28 Total: -1.00 -33.68 350.54 -7.53 -41.21 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -5.06 Total: 3.53 kcal Atomic # 6 Polarization: -20.05 SS G_CDS: -0.58 Total: -20.64 kcal Atomic # 7 Polarization: -35.71 SS G_CDS: 0.71 Total: -35.00 kcal Atomic # 8 Polarization: -33.04 SS G_CDS: -2.42 Total: -35.46 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.86 Total: 16.26 kcal Atomic # 16 Polarization: 25.41 SS G_CDS: -0.59 Total: 24.82 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.68 -7.53 -41.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076008118.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.644 kcal (2) G-P(sol) polarization free energy of solvation -33.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds