Wall clock time and date at job start Tue Mar 31 2020 11:27:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42894 * 114.00004 * 2 1 4 4 C 1.52994 * 109.47247 * 179.97438 * 3 2 1 5 5 S 1.81397 * 109.47318 * 179.97438 * 4 3 2 6 6 O 1.42096 * 110.54546 * 68.37683 * 5 4 3 7 7 O 1.42099 * 110.54582 * 291.62366 * 5 4 3 8 8 N 1.65602 * 104.45139 * 179.97438 * 5 4 3 9 9 C 1.46505 * 119.99755 * 65.00191 * 8 5 4 10 10 C 1.50699 * 109.46837 * 165.00307 * 9 8 5 11 11 C 1.38305 * 119.93408 * 89.99748 * 10 9 8 12 12 C 1.38101 * 120.07071 * 179.97438 * 11 10 9 13 13 C 1.38876 * 119.92956 * 0.02562 * 12 11 10 14 14 O 1.35750 * 120.06861 * 180.02562 * 13 12 11 15 15 C 1.34828 * 117.00075 * 5.53840 * 14 13 12 16 16 H 1.08003 * 120.00029 * 354.94359 * 15 14 13 17 17 C 1.38659 * 120.00122 * 174.94542 * 15 14 13 18 18 N 1.31558 * 119.99705 * 180.02562 * 17 15 14 19 19 Si 1.86795 * 120.00035 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.47181 * 89.99980 * 19 17 15 21 21 H 1.48498 * 109.47260 * 210.00361 * 19 17 15 22 22 H 1.48502 * 109.47130 * 330.00179 * 19 17 15 23 23 C 1.38880 * 119.86555 * 0.27954 * 13 12 11 24 24 C 1.38102 * 119.92551 * 359.44514 * 23 13 12 25 25 H 1.09001 * 109.46940 * 180.02562 * 1 2 3 26 26 H 1.08993 * 109.47088 * 300.00419 * 1 2 3 27 27 H 1.09000 * 109.46899 * 60.00500 * 1 2 3 28 28 H 1.09000 * 109.47580 * 59.99383 * 3 2 1 29 29 H 1.09009 * 109.46694 * 299.99633 * 3 2 1 30 30 H 1.09000 * 109.47377 * 59.99841 * 4 3 2 31 31 H 1.08998 * 109.47569 * 299.99684 * 4 3 2 32 32 H 0.96998 * 120.00343 * 245.00345 * 8 5 4 33 33 H 1.08986 * 109.47314 * 44.99897 * 9 8 5 34 34 H 1.09005 * 109.46923 * 284.99642 * 9 8 5 35 35 H 1.07999 * 119.96326 * 0.02562 * 11 10 9 36 36 H 1.07997 * 120.03156 * 180.02562 * 12 11 10 37 37 H 0.96997 * 119.99350 * 179.97438 * 18 17 15 38 38 H 1.07996 * 120.04097 * 179.72435 * 23 13 12 39 39 H 1.07997 * 119.96688 * 180.27743 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 16 4.2733 2.8418 -0.0001 6 8 4.0277 3.4975 1.2363 7 8 4.0286 3.4960 -1.2376 8 7 5.9063 2.5670 0.0014 9 6 6.5406 1.9158 -1.1475 10 6 8.0332 2.1103 -1.0742 11 6 8.8179 1.1853 -0.4100 12 6 10.1861 1.3605 -0.3415 13 6 10.7737 2.4672 -0.9402 14 8 12.1184 2.6419 -0.8751 15 6 12.8383 1.6488 -0.3154 16 1 12.3361 0.8024 0.1296 17 6 14.2233 1.7140 -0.3110 18 7 14.9257 0.7447 0.2347 19 14 15.0919 3.1775 -1.0811 20 1 15.2867 4.2335 -0.0554 21 1 16.4127 2.7487 -1.6071 22 1 14.2667 3.7139 -2.1931 23 6 9.9824 3.3977 -1.6010 24 6 8.6155 3.2139 -1.6709 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.6886 1.8464 0.8899 29 1 1.6886 1.8463 -0.8901 30 1 3.8575 0.6435 -0.8891 31 1 3.8568 0.6439 0.8908 32 1 6.4430 2.8372 0.7629 33 1 6.1617 2.3562 -2.0696 34 1 6.3120 0.8501 -1.1330 35 1 8.3604 0.3246 0.0550 36 1 10.7983 0.6375 0.1770 37 1 15.8946 0.7902 0.2374 38 1 10.4359 4.2617 -2.0637 39 1 8.0000 3.9347 -2.1885 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076008118.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:07 Heat of formation + Delta-G solvation = -144.381540 kcal Electronic energy + Delta-G solvation = -23133.366049 eV Core-core repulsion = 19361.274716 eV Total energy + Delta-G solvation = -3772.091333 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.102 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.92075 -38.97369 -38.79328 -38.18395 -37.06328 -35.87810 -34.42172 -32.94248 -31.82905 -31.07615 -27.61968 -27.46836 -25.76705 -24.46398 -23.68569 -22.10163 -20.33546 -19.83371 -19.15648 -18.82384 -17.97075 -17.54704 -17.04299 -16.83962 -16.61815 -16.28970 -15.93291 -15.75431 -15.72310 -15.46451 -15.05948 -14.60752 -14.51785 -14.26352 -14.07303 -13.73104 -13.52915 -13.23727 -13.17598 -13.11477 -12.99265 -12.70040 -12.52597 -12.43187 -12.39488 -12.17641 -11.93017 -11.87686 -11.27876 -10.91159 -10.76441 -10.38667 -9.80021 -9.06121 -8.50506 -6.22860 -0.82309 0.56209 0.58215 1.31958 1.35379 1.51393 1.78555 2.27438 2.55597 2.77763 3.03075 3.04333 3.16943 3.24642 3.58799 3.77122 3.85421 4.06363 4.15278 4.18619 4.40972 4.46651 4.49265 4.51430 4.57474 4.59359 4.73983 4.83008 4.85335 4.98964 5.01369 5.26787 5.36939 5.57943 5.74223 5.80890 5.90841 6.04669 6.07959 6.23582 6.84019 7.58429 8.60716 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.033345 B = 0.002330 C = 0.002250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.504172 B =12015.426920 C =12443.508590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.403 6.403 3 C 0.059 3.941 4 C -0.623 4.623 5 S 2.640 3.360 6 O -0.990 6.990 7 O -0.982 6.982 8 N -1.110 6.110 9 C 0.166 3.834 10 C -0.167 4.167 11 C -0.050 4.050 12 C -0.240 4.240 13 C 0.124 3.876 14 O -0.246 6.246 15 C -0.398 4.398 16 H 0.085 0.915 17 C 0.009 3.991 18 N -0.921 5.921 19 Si 0.969 3.031 20 H -0.267 1.267 21 H -0.268 1.268 22 H -0.263 1.263 23 C -0.197 4.197 24 C -0.053 4.053 25 H 0.101 0.899 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.161 0.839 31 H 0.157 0.843 32 H 0.423 0.577 33 H 0.095 0.905 34 H 0.102 0.898 35 H 0.147 0.853 36 H 0.110 0.890 37 H 0.284 0.716 38 H 0.125 0.875 39 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.398 0.002 -2.257 27.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.323 6.323 3 C -0.020 4.020 4 C -0.753 4.753 5 S 2.733 3.267 6 O -0.980 6.980 7 O -0.972 6.972 8 N -0.871 5.871 9 C 0.041 3.959 10 C -0.169 4.169 11 C -0.069 4.069 12 C -0.260 4.260 13 C 0.075 3.925 14 O -0.153 6.153 15 C -0.474 4.474 16 H 0.102 0.898 17 C -0.189 4.189 18 N -0.562 5.562 19 Si 0.792 3.208 20 H -0.192 1.192 21 H -0.193 1.193 22 H -0.187 1.187 23 C -0.216 4.216 24 C -0.072 4.072 25 H 0.119 0.881 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.090 0.910 29 H 0.094 0.906 30 H 0.179 0.821 31 H 0.175 0.825 32 H 0.259 0.741 33 H 0.113 0.887 34 H 0.120 0.880 35 H 0.165 0.835 36 H 0.128 0.872 37 H 0.094 0.906 38 H 0.143 0.857 39 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -27.494 0.718 -2.451 27.612 hybrid contribution 1.213 -0.283 0.461 1.328 sum -26.281 0.435 -1.990 26.360 Atomic orbital electron populations 1.23065 0.79069 1.04410 1.01416 1.87891 1.21763 1.26952 1.95677 1.22258 0.90201 0.86776 1.02726 1.30657 1.04929 1.24808 1.14872 1.03911 0.73289 0.76611 0.72845 1.93575 1.84650 1.73357 1.46458 1.93575 1.84806 1.72302 1.46560 1.55501 1.25675 1.77397 1.28569 1.20255 0.88246 0.98927 0.88493 1.19618 0.95435 0.97152 1.04723 1.21031 0.91307 0.98706 0.95833 1.21318 0.96932 1.00319 1.07389 1.19761 0.83253 0.95009 0.94501 1.83520 1.15607 1.43015 1.73149 1.20718 0.89821 1.00515 1.36347 0.89801 1.25275 0.95873 1.00700 0.97070 1.69725 1.07933 1.33604 1.44932 0.85230 0.77695 0.78446 0.79434 1.19212 1.19315 1.18741 1.20511 0.94193 1.00925 1.05985 1.21027 0.92467 0.96911 0.96780 0.88066 0.92756 0.92614 0.90989 0.90648 0.82134 0.82450 0.74147 0.88693 0.87993 0.83513 0.87229 0.90589 0.85687 0.83256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 11.01 113.37 1.25 1.40 16 2 O -0.40 -6.10 10.70 -148.98 -1.59 -7.69 16 3 C 0.06 0.74 5.95 71.98 0.43 1.16 16 4 C -0.62 -6.49 6.44 71.98 0.46 -6.03 16 5 S 2.64 42.79 5.46 -56.49 -0.31 42.48 16 6 O -0.99 -23.03 18.08 -127.65 -2.31 -25.34 16 7 O -0.98 -21.89 17.50 -127.65 -2.23 -24.12 16 8 N -1.11 -17.76 5.88 -190.79 -1.12 -18.88 16 9 C 0.17 2.69 6.25 85.63 0.54 3.23 16 10 C -0.17 -4.18 5.28 -19.83 -0.10 -4.28 16 11 C -0.05 -1.47 9.69 22.25 0.22 -1.25 16 12 C -0.24 -9.75 9.17 22.39 0.21 -9.54 16 13 C 0.12 5.55 6.65 22.58 0.15 5.70 16 14 O -0.25 -13.04 8.59 -22.72 -0.20 -13.24 16 15 C -0.40 -22.93 9.95 67.92 0.68 -22.25 16 16 H 0.08 5.02 5.44 -2.91 -0.02 5.01 16 17 C 0.01 0.54 5.49 84.83 0.47 1.00 16 18 N -0.92 -54.29 13.96 21.61 0.30 -53.98 16 19 Si 0.97 44.99 28.62 68.60 1.96 46.95 16 20 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 21 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 22 H -0.26 -12.19 7.11 99.48 0.71 -11.48 16 23 C -0.20 -7.16 9.99 22.39 0.22 -6.94 16 24 C -0.05 -1.50 9.69 22.25 0.22 -1.28 16 25 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 27 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 28 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 30 H 0.16 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.16 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.42 7.01 8.61 -96.74 -0.83 6.18 16 33 H 0.09 1.40 7.64 -2.39 -0.02 1.38 16 34 H 0.10 1.02 8.08 -2.38 -0.02 1.00 16 35 H 0.15 3.27 8.06 -2.91 -0.02 3.25 16 36 H 0.11 4.95 5.64 -2.91 -0.02 4.94 16 37 H 0.28 15.40 8.31 -92.71 -0.77 14.63 16 38 H 0.13 4.30 8.06 -2.91 -0.02 4.28 16 39 H 0.15 3.30 8.06 -2.91 -0.02 3.28 16 Total: -1.00 -76.93 350.54 -0.53 -77.46 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: 0.24 Total: 15.44 kcal Atomic # 6 Polarization: -43.81 SS G_CDS: 4.72 Total: -39.08 kcal Atomic # 7 Polarization: -72.04 SS G_CDS: -0.82 Total: -72.86 kcal Atomic # 8 Polarization: -64.06 SS G_CDS: -6.33 Total: -70.39 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 1.96 Total: 46.95 kcal Atomic # 16 Polarization: 42.79 SS G_CDS: -0.31 Total: 42.48 kcal Total: -76.93 -0.53 -77.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076008118.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.923 kcal (2) G-P(sol) polarization free energy of solvation -76.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds