Wall clock time and date at job start Tue Mar 31 2020 10:33:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31594 * 122.23147 * 2 1 4 4 C 1.29944 * 117.14006 * 179.97438 * 3 2 1 5 5 N 1.38885 * 125.36388 * 180.02562 * 4 3 2 6 6 C 1.34783 * 120.00043 * 180.02562 * 5 4 3 7 7 O 1.21288 * 119.99789 * 0.02562 * 6 5 4 8 8 C 1.50699 * 120.00232 * 180.02562 * 6 5 4 9 9 H 1.08997 * 109.47097 * 44.95833 * 8 6 5 10 10 C 1.53002 * 109.47123 * 284.95640 * 8 6 5 11 11 N 1.46896 * 109.46962 * 164.95815 * 8 6 5 12 12 C 1.46897 * 111.00135 * 71.99038 * 11 8 6 13 13 C 1.46904 * 110.99938 * 195.93991 * 11 8 6 14 14 S 1.76142 * 109.26720 * 0.27069 * 4 3 2 15 15 C 1.34652 * 122.23070 * 179.97438 * 2 1 3 16 16 S 1.76204 * 125.93068 * 359.97438 * 15 2 1 17 17 C 1.76205 * 99.99903 * 179.97438 * 16 15 2 18 18 H 1.08002 * 119.99860 * 359.97438 * 17 16 15 19 19 C 1.38428 * 119.99788 * 179.97438 * 17 16 15 20 20 N 1.31814 * 120.00104 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99659 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47286 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.47070 * 120.00488 * 21 19 17 24 24 H 1.48503 * 109.46797 * 239.99986 * 21 19 17 25 25 H 1.08997 * 109.46890 * 90.02048 * 1 2 3 26 26 H 1.09003 * 109.47010 * 210.02106 * 1 2 3 27 27 H 1.09003 * 109.47227 * 330.02369 * 1 2 3 28 28 H 0.97002 * 120.00601 * 0.02562 * 5 4 3 29 29 H 1.08997 * 109.47292 * 300.00075 * 10 8 6 30 30 H 1.09001 * 109.47172 * 179.97438 * 10 8 6 31 31 H 1.09008 * 109.46795 * 60.00129 * 10 8 6 32 32 H 1.08998 * 109.47315 * 59.99343 * 12 11 8 33 33 H 1.09002 * 109.47335 * 179.97438 * 12 11 8 34 34 H 1.09001 * 109.47100 * 299.99377 * 12 11 8 35 35 H 1.09004 * 109.46858 * 54.56273 * 13 11 8 36 36 H 1.08996 * 109.47322 * 174.56744 * 13 11 8 37 37 H 1.09006 * 109.47153 * 294.56852 * 13 11 8 38 38 H 0.97000 * 119.99494 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2089 1.1132 0.0000 4 6 3.5032 0.9978 0.0005 5 7 4.4043 2.0546 0.0011 6 6 5.7298 1.8101 0.0011 7 8 6.1355 0.6670 0.0001 8 6 6.7076 2.9567 0.0023 9 1 6.3900 3.7043 0.7291 10 6 6.7555 3.5876 -1.3907 11 7 8.0430 2.4610 0.3615 12 6 8.6238 1.6722 -0.7332 13 6 8.9309 3.5681 0.7412 14 16 3.9345 -0.7099 -0.0068 15 6 2.2251 -1.1390 0.0005 16 16 1.5697 -2.7746 0.0019 17 6 3.0666 -3.7041 0.0012 18 1 4.0188 -3.1944 -0.0003 19 6 3.0222 -5.0877 0.0025 20 7 1.8601 -5.7098 0.0037 21 14 4.6091 -6.0730 0.0024 22 1 5.7682 -5.1448 0.0015 23 1 4.6611 -6.9279 1.2157 24 1 4.6596 -6.9300 -1.2094 25 1 -0.3633 -0.0004 -1.0276 26 1 -0.3633 -0.8898 0.5142 27 1 -0.3634 0.8902 0.5135 28 1 4.0799 2.9688 0.0015 29 1 7.0732 2.8400 -2.1175 30 1 7.4625 4.4173 -1.3897 31 1 5.7646 3.9554 -1.6572 32 1 8.7099 2.2947 -1.6237 33 1 9.6123 1.3178 -0.4410 34 1 7.9802 0.8188 -0.9472 35 1 8.4651 4.1514 1.5354 36 1 9.8810 3.1671 1.0942 37 1 9.1054 4.2072 -0.1245 38 1 1.8290 -6.6793 0.0042 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078704997.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:33:28 Heat of formation + Delta-G solvation = 14.308377 kcal Electronic energy + Delta-G solvation = -21537.071791 eV Core-core repulsion = 18246.907392 eV Total energy + Delta-G solvation = -3290.164399 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.082 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.48959 -38.66271 -37.37779 -34.72047 -32.79504 -31.46618 -30.17001 -27.78474 -27.08570 -26.04727 -25.73313 -23.99511 -21.80565 -20.74528 -19.36610 -18.02496 -17.67064 -16.82986 -16.19034 -15.67866 -15.50269 -15.08384 -14.94064 -14.83375 -14.12117 -14.02148 -13.76594 -13.17065 -13.06724 -12.68319 -12.65351 -12.35947 -12.04814 -11.99445 -11.85105 -11.72494 -11.59213 -11.34464 -11.25808 -11.03725 -10.67041 -10.51470 -10.22066 -9.72626 -9.50887 -9.03863 -8.71726 -8.64079 -8.52581 -7.76476 -6.57718 -6.47134 -4.25156 1.42928 1.91985 2.50016 2.56787 2.81229 3.10444 3.11145 3.20313 3.39018 3.63954 3.77516 4.00606 4.44123 4.57674 4.69186 4.84976 4.98240 5.02324 5.06605 5.20158 5.25196 5.27575 5.34176 5.46125 5.58260 5.72214 5.99357 6.01472 6.20289 6.25277 6.47819 6.52609 6.62959 6.76474 7.00608 7.24237 7.36122 8.05301 8.07403 8.55072 8.91223 10.48176 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.014532 B = 0.004262 C = 0.003372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1926.263036 B = 6567.413351 C = 8301.467860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.019 3.981 3 N -0.477 5.477 4 C 0.190 3.810 5 N -0.616 5.616 6 C 0.512 3.488 7 O -0.488 6.488 8 C 0.074 3.926 9 H 0.109 0.891 10 C -0.184 4.184 11 N -0.525 5.525 12 C 0.011 3.989 13 C 0.024 3.976 14 S 0.202 5.798 15 C -0.252 4.252 16 S 0.146 5.854 17 C -0.555 4.555 18 H 0.089 0.911 19 C 0.082 3.918 20 N -0.863 5.863 21 Si 0.924 3.076 22 H -0.264 1.264 23 H -0.275 1.275 24 H -0.275 1.275 25 H 0.062 0.938 26 H 0.071 0.929 27 H 0.061 0.939 28 H 0.413 0.587 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.028 0.972 33 H 0.067 0.933 34 H 0.093 0.907 35 H 0.068 0.932 36 H 0.073 0.927 37 H 0.028 0.972 38 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.849 17.791 -1.177 19.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.123 4.123 3 N -0.199 5.199 4 C -0.181 4.181 5 N -0.266 5.266 6 C 0.296 3.704 7 O -0.360 6.360 8 C -0.039 4.039 9 H 0.126 0.874 10 C -0.243 4.243 11 N -0.248 5.248 12 C -0.136 4.136 13 C -0.124 4.124 14 S 0.446 5.554 15 C -0.489 4.489 16 S 0.396 5.604 17 C -0.704 4.704 18 H 0.107 0.893 19 C -0.129 4.129 20 N -0.497 5.497 21 Si 0.748 3.252 22 H -0.188 1.188 23 H -0.200 1.200 24 H -0.200 1.200 25 H 0.081 0.919 26 H 0.089 0.911 27 H 0.080 0.920 28 H 0.250 0.750 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.047 0.953 33 H 0.086 0.914 34 H 0.111 0.889 35 H 0.087 0.913 36 H 0.092 0.908 37 H 0.046 0.954 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 8.611 15.838 -0.767 18.044 hybrid contribution 1.229 0.989 -0.647 1.705 sum 9.840 16.827 -1.414 19.544 Atomic orbital electron populations 1.20113 0.88103 1.02087 1.01743 1.19026 0.96672 0.84621 1.12022 1.65816 1.02847 1.32384 1.18821 1.23772 0.89840 0.92966 1.11518 1.42396 1.04393 1.07977 1.71822 1.20672 0.81576 0.91399 0.76711 1.90657 1.76532 1.22372 1.46440 1.21506 0.90214 0.93924 0.98252 0.87357 1.22420 1.03642 1.01674 0.96610 1.61825 1.00846 1.22450 1.39707 1.22683 1.00968 0.98680 0.91273 1.22449 0.97334 0.92741 0.99858 1.85867 1.01659 0.95393 1.72504 1.28768 1.01386 1.06684 1.12055 1.83066 1.11082 0.84476 1.81757 1.23306 0.93600 0.94029 1.59422 0.89276 1.25023 0.98243 0.96676 0.92955 1.70027 1.24355 1.10212 1.45093 0.85996 0.81408 0.79460 0.78304 1.18752 1.20005 1.20028 0.91922 0.91061 0.91969 0.75039 0.90911 0.91057 0.91035 0.95312 0.91392 0.88871 0.91277 0.90824 0.95352 0.91404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.08 10.02 36.01 0.36 -0.71 16 2 C 0.02 0.40 6.73 -83.96 -0.57 -0.16 16 3 N -0.48 -9.60 10.55 -9.79 -0.10 -9.70 16 4 C 0.19 3.65 8.40 -87.20 -0.73 2.92 16 5 N -0.62 -8.89 5.40 -11.78 -0.06 -8.95 16 6 C 0.51 7.29 6.96 -10.98 -0.08 7.22 16 7 O -0.49 -8.90 11.78 5.55 0.07 -8.83 16 8 C 0.07 0.72 2.70 -68.87 -0.19 0.53 16 9 H 0.11 0.81 7.88 -51.93 -0.41 0.40 16 10 C -0.18 -1.42 8.29 37.16 0.31 -1.11 16 11 N -0.52 -5.64 4.72 -244.58 -1.15 -6.80 16 12 C 0.01 0.12 8.53 60.06 0.51 0.64 16 13 C 0.02 0.18 9.36 60.07 0.56 0.74 16 14 S 0.20 4.49 18.35 -107.50 -1.97 2.52 16 15 C -0.25 -5.88 6.67 29.46 0.20 -5.68 16 16 S 0.15 3.70 20.74 -107.50 -2.23 1.47 16 17 C -0.55 -15.27 9.26 30.80 0.29 -14.98 16 18 H 0.09 2.45 5.97 -52.49 -0.31 2.13 16 19 C 0.08 2.21 5.49 -17.49 -0.10 2.11 16 20 N -0.86 -23.98 13.22 55.47 0.73 -23.25 16 21 Si 0.92 20.88 29.55 -169.99 -5.02 15.86 16 22 H -0.26 -5.97 7.11 56.52 0.40 -5.57 16 23 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 24 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 25 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 26 H 0.07 1.26 7.37 -51.93 -0.38 0.88 16 27 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 28 H 0.41 4.44 8.82 -40.82 -0.36 4.08 16 29 H 0.07 0.65 6.32 -51.93 -0.33 0.32 16 30 H 0.07 0.43 7.06 -51.93 -0.37 0.07 16 31 H 0.07 0.48 8.14 -51.92 -0.42 0.06 16 32 H 0.03 0.26 6.19 -51.93 -0.32 -0.06 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.09 1.29 5.92 -51.93 -0.31 0.98 16 35 H 0.07 0.44 7.97 -51.93 -0.41 0.03 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.03 0.18 7.09 -51.93 -0.37 -0.19 16 38 H 0.28 7.09 8.32 -40.82 -0.34 6.75 16 LS Contribution 337.68 15.07 5.09 5.09 Total: -1.00 -32.08 337.68 -8.91 -40.99 By element: Atomic # 1 Polarization: 4.91 SS G_CDS: -4.82 Total: 0.09 kcal Atomic # 6 Polarization: -9.06 SS G_CDS: 0.57 Total: -8.49 kcal Atomic # 7 Polarization: -48.11 SS G_CDS: -0.59 Total: -48.70 kcal Atomic # 8 Polarization: -8.90 SS G_CDS: 0.07 Total: -8.83 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Atomic # 16 Polarization: 8.19 SS G_CDS: -4.20 Total: 3.99 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.08 -8.91 -40.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078704997.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.295 kcal (2) G-P(sol) polarization free energy of solvation -32.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds