Wall clock time and date at job start Tue Mar 31 2020 10:33:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31594 * 122.23147 * 2 1 4 4 C 1.29944 * 117.14006 * 179.97438 * 3 2 1 5 5 N 1.38885 * 125.36388 * 180.02562 * 4 3 2 6 6 C 1.34783 * 120.00043 * 180.02562 * 5 4 3 7 7 O 1.21288 * 119.99789 * 0.02562 * 6 5 4 8 8 C 1.50699 * 120.00232 * 180.02562 * 6 5 4 9 9 H 1.08997 * 109.47097 * 44.95833 * 8 6 5 10 10 C 1.53002 * 109.47123 * 284.95640 * 8 6 5 11 11 N 1.46896 * 109.46962 * 164.95815 * 8 6 5 12 12 C 1.46897 * 111.00135 * 71.99038 * 11 8 6 13 13 C 1.46904 * 110.99938 * 195.93991 * 11 8 6 14 14 S 1.76142 * 109.26720 * 0.27069 * 4 3 2 15 15 C 1.34652 * 122.23070 * 179.97438 * 2 1 3 16 16 S 1.76204 * 125.93068 * 359.97438 * 15 2 1 17 17 C 1.76205 * 99.99903 * 179.97438 * 16 15 2 18 18 H 1.08002 * 119.99860 * 359.97438 * 17 16 15 19 19 C 1.38428 * 119.99788 * 179.97438 * 17 16 15 20 20 N 1.31814 * 120.00104 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99659 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47286 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.47070 * 120.00488 * 21 19 17 24 24 H 1.48503 * 109.46797 * 239.99986 * 21 19 17 25 25 H 1.08997 * 109.46890 * 90.02048 * 1 2 3 26 26 H 1.09003 * 109.47010 * 210.02106 * 1 2 3 27 27 H 1.09003 * 109.47227 * 330.02369 * 1 2 3 28 28 H 0.97002 * 120.00601 * 0.02562 * 5 4 3 29 29 H 1.08997 * 109.47292 * 300.00075 * 10 8 6 30 30 H 1.09001 * 109.47172 * 179.97438 * 10 8 6 31 31 H 1.09008 * 109.46795 * 60.00129 * 10 8 6 32 32 H 1.08998 * 109.47315 * 59.99343 * 12 11 8 33 33 H 1.09002 * 109.47335 * 179.97438 * 12 11 8 34 34 H 1.09001 * 109.47100 * 299.99377 * 12 11 8 35 35 H 1.09004 * 109.46858 * 54.56273 * 13 11 8 36 36 H 1.08996 * 109.47322 * 174.56744 * 13 11 8 37 37 H 1.09006 * 109.47153 * 294.56852 * 13 11 8 38 38 H 0.97000 * 119.99494 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2089 1.1132 0.0000 4 6 3.5032 0.9978 0.0005 5 7 4.4043 2.0546 0.0011 6 6 5.7298 1.8101 0.0011 7 8 6.1355 0.6670 0.0001 8 6 6.7076 2.9567 0.0023 9 1 6.3900 3.7043 0.7291 10 6 6.7555 3.5876 -1.3907 11 7 8.0430 2.4610 0.3615 12 6 8.6238 1.6722 -0.7332 13 6 8.9309 3.5681 0.7412 14 16 3.9345 -0.7099 -0.0068 15 6 2.2251 -1.1390 0.0005 16 16 1.5697 -2.7746 0.0019 17 6 3.0666 -3.7041 0.0012 18 1 4.0188 -3.1944 -0.0003 19 6 3.0222 -5.0877 0.0025 20 7 1.8601 -5.7098 0.0037 21 14 4.6091 -6.0730 0.0024 22 1 5.7682 -5.1448 0.0015 23 1 4.6611 -6.9279 1.2157 24 1 4.6596 -6.9300 -1.2094 25 1 -0.3633 -0.0004 -1.0276 26 1 -0.3633 -0.8898 0.5142 27 1 -0.3634 0.8902 0.5135 28 1 4.0799 2.9688 0.0015 29 1 7.0732 2.8400 -2.1175 30 1 7.4625 4.4173 -1.3897 31 1 5.7646 3.9554 -1.6572 32 1 8.7099 2.2947 -1.6237 33 1 9.6123 1.3178 -0.4410 34 1 7.9802 0.8188 -0.9472 35 1 8.4651 4.1514 1.5354 36 1 9.8810 3.1671 1.0942 37 1 9.1054 4.2072 -0.1245 38 1 1.8290 -6.6793 0.0042 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078704997.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:33:27 Heat of formation + Delta-G solvation = -8.650249 kcal Electronic energy + Delta-G solvation = -21538.067352 eV Core-core repulsion = 18246.907392 eV Total energy + Delta-G solvation = -3291.159960 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.082 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.67980 -40.23837 -38.33312 -36.10713 -34.81222 -32.54613 -31.38730 -28.77748 -28.50707 -27.71448 -26.87182 -25.24401 -23.01416 -22.09771 -20.81884 -19.64136 -19.16170 -18.14631 -17.52126 -17.07526 -16.85071 -16.71582 -16.20137 -15.74501 -15.56563 -15.32064 -14.94620 -14.67763 -14.37000 -13.87567 -13.58016 -13.39454 -13.26909 -13.23681 -13.07383 -12.95276 -12.88036 -12.80739 -12.49958 -12.31124 -12.19546 -12.06449 -12.03110 -11.33177 -11.13596 -10.72461 -10.46078 -10.44167 -9.51000 -9.29377 -8.57518 -8.35444 -6.29426 -0.20552 0.24208 0.85019 1.23647 1.27276 1.32913 1.40723 1.50065 1.65502 2.04090 2.14740 2.81589 2.98532 3.10234 3.40958 3.79475 3.88195 4.00848 4.33577 4.38921 4.44926 4.61479 4.64232 4.68064 4.70683 4.80295 4.85603 4.98052 5.04277 5.06332 5.14257 5.19504 5.30314 5.49299 5.81421 6.02156 6.03023 6.11128 6.84078 6.87617 6.90424 8.50589 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.014532 B = 0.004262 C = 0.003372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1926.263036 B = 6567.413351 C = 8301.467860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.037 3.963 3 N -0.484 5.484 4 C 0.231 3.769 5 N -0.603 5.603 6 C 0.508 3.492 7 O -0.525 6.525 8 C 0.083 3.917 9 H 0.143 0.857 10 C -0.179 4.179 11 N -0.552 5.552 12 C 0.016 3.984 13 C 0.025 3.975 14 S 0.155 5.845 15 C -0.284 4.284 16 S 0.097 5.903 17 C -0.575 4.575 18 H 0.079 0.921 19 C 0.036 3.964 20 N -0.896 5.896 21 Si 0.985 3.015 22 H -0.270 1.270 23 H -0.263 1.263 24 H -0.262 1.262 25 H 0.078 0.922 26 H 0.067 0.933 27 H 0.087 0.913 28 H 0.435 0.565 29 H 0.055 0.945 30 H 0.096 0.904 31 H 0.085 0.915 32 H 0.047 0.953 33 H 0.071 0.929 34 H 0.056 0.944 35 H 0.083 0.917 36 H 0.073 0.927 37 H 0.046 0.954 38 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.121 21.155 -1.184 23.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.104 4.104 3 N -0.206 5.206 4 C -0.142 4.142 5 N -0.256 5.256 6 C 0.295 3.705 7 O -0.399 6.399 8 C -0.030 4.030 9 H 0.160 0.840 10 C -0.238 4.238 11 N -0.276 5.276 12 C -0.132 4.132 13 C -0.122 4.122 14 S 0.400 5.600 15 C -0.519 4.519 16 S 0.344 5.656 17 C -0.723 4.723 18 H 0.097 0.903 19 C -0.171 4.171 20 N -0.531 5.531 21 Si 0.806 3.194 22 H -0.194 1.194 23 H -0.188 1.188 24 H -0.187 1.187 25 H 0.097 0.903 26 H 0.086 0.914 27 H 0.105 0.895 28 H 0.277 0.723 29 H 0.074 0.926 30 H 0.115 0.885 31 H 0.104 0.896 32 H 0.065 0.935 33 H 0.090 0.910 34 H 0.075 0.925 35 H 0.101 0.899 36 H 0.092 0.908 37 H 0.064 0.936 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 9.900 19.281 -0.773 21.688 hybrid contribution 0.953 0.309 -0.637 1.187 sum 10.853 19.590 -1.410 22.440 Atomic orbital electron populations 1.20242 0.85686 1.03118 1.03076 1.19709 0.98416 0.84201 1.08067 1.66038 1.02666 1.31261 1.20629 1.24130 0.90190 0.93053 1.06860 1.42606 1.03970 1.07846 1.71158 1.21875 0.81655 0.92298 0.74672 1.90669 1.76950 1.24632 1.47665 1.21624 0.88569 0.92074 1.00687 0.83991 1.22411 1.05231 1.01736 0.94411 1.61754 1.01746 1.24234 1.39824 1.22549 1.00242 0.97994 0.92413 1.22506 0.96761 0.91945 1.00952 1.86092 1.02226 0.98311 1.73395 1.28578 1.01741 1.05977 1.15593 1.82860 1.11211 0.86305 1.85204 1.23476 0.93858 0.94853 1.60126 0.90261 1.25868 1.01351 0.97408 0.92513 1.70101 1.26053 1.10682 1.46237 0.85094 0.77202 0.77973 0.79089 1.19420 1.18780 1.18707 0.90319 0.91441 0.89453 0.72330 0.92574 0.88492 0.89650 0.93506 0.91002 0.92500 0.89858 0.90827 0.93585 0.90924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.10 10.02 71.24 0.71 -1.39 16 2 C 0.04 1.56 6.73 41.77 0.28 1.84 16 3 N -0.48 -18.58 10.55 -184.87 -1.95 -20.53 16 4 C 0.23 8.56 8.40 179.15 1.50 10.06 16 5 N -0.60 -15.84 5.40 -309.57 -1.67 -17.51 16 6 C 0.51 13.51 6.96 87.66 0.61 14.12 16 7 O -0.53 -19.11 11.78 -3.05 -0.04 -19.15 16 8 C 0.08 1.33 2.70 44.17 0.12 1.45 16 9 H 0.14 1.39 7.88 -2.39 -0.02 1.37 16 10 C -0.18 -2.05 8.29 71.98 0.60 -1.46 16 11 N -0.55 -10.46 4.72 -927.72 -4.38 -14.84 16 12 C 0.02 0.33 8.53 127.69 1.09 1.41 16 13 C 0.03 0.29 9.36 127.69 1.20 1.48 16 14 S 0.16 7.05 18.35 -56.49 -1.04 6.02 16 15 C -0.28 -13.53 6.67 67.00 0.45 -13.08 16 16 S 0.10 5.14 20.74 -56.49 -1.17 3.97 16 17 C -0.57 -33.06 9.26 67.87 0.63 -32.43 16 18 H 0.08 4.58 5.97 -2.91 -0.02 4.56 16 19 C 0.04 1.99 5.49 84.74 0.47 2.45 16 20 N -0.90 -51.32 13.22 21.59 0.29 -51.04 16 21 Si 0.99 43.89 29.55 68.60 2.03 45.92 16 22 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 23 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 24 H -0.26 -11.05 7.11 99.48 0.71 -10.35 16 25 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 26 H 0.07 2.37 7.37 -2.39 -0.02 2.35 16 27 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 28 H 0.44 7.64 8.82 -92.71 -0.82 6.83 16 29 H 0.06 0.86 6.32 -2.39 -0.02 0.84 16 30 H 0.10 0.68 7.06 -2.39 -0.02 0.66 16 31 H 0.08 0.76 8.14 -2.38 -0.02 0.74 16 32 H 0.05 0.76 6.19 -2.39 -0.01 0.75 16 33 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.06 1.59 5.92 -2.39 -0.01 1.58 16 35 H 0.08 0.71 7.97 -2.38 -0.02 0.69 16 36 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.05 0.37 7.09 -2.38 -0.02 0.35 16 38 H 0.28 14.80 8.32 -92.71 -0.77 14.03 16 Total: -1.00 -73.00 337.68 0.00 -73.00 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: 0.28 Total: 9.69 kcal Atomic # 6 Polarization: -23.19 SS G_CDS: 7.65 Total: -15.54 kcal Atomic # 7 Polarization: -96.20 SS G_CDS: -7.72 Total: -103.91 kcal Atomic # 8 Polarization: -19.11 SS G_CDS: -0.04 Total: -19.15 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Atomic # 16 Polarization: 12.20 SS G_CDS: -2.21 Total: 9.99 kcal Total: -73.00 0.00 -73.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078704997.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.348 kcal (2) G-P(sol) polarization free energy of solvation -73.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds