Wall clock time and date at job start Tue Mar 31 2020 11:14:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46501 * 109.47080 * 2 1 4 4 C 1.46503 * 119.99872 * 270.00285 * 3 2 1 5 5 C 1.50703 * 109.46843 * 270.00038 * 4 3 2 6 6 H 1.08001 * 120.00387 * 0.02562 * 5 4 3 7 7 C 1.37879 * 119.99705 * 180.02562 * 5 4 3 8 8 N 1.31509 * 120.00299 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 119.99670 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47054 * 59.99964 * 9 7 5 11 11 H 1.48498 * 109.46718 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47019 * 299.99803 * 9 7 5 13 13 C 1.34776 * 119.99873 * 90.00265 * 3 2 1 14 14 O 1.21283 * 119.99826 * 180.02562 * 13 3 2 15 15 C 1.50699 * 120.00035 * 359.97438 * 13 3 2 16 16 S 1.81400 * 109.46935 * 180.02562 * 15 13 3 17 17 C 1.76204 * 102.99919 * 180.02562 * 16 15 13 18 18 C 1.38960 * 120.04139 * 0.02562 * 17 16 15 19 19 C 1.38113 * 119.98359 * 179.97438 * 18 17 16 20 20 C 1.38434 * 120.08051 * 359.97438 * 19 18 17 21 21 F 1.35103 * 119.95471 * 180.27750 * 20 19 18 22 22 C 1.38675 * 120.09103 * 0.02562 * 20 19 18 23 23 F 1.35102 * 119.99214 * 180.02562 * 22 20 19 24 24 C 1.38298 * 120.00874 * 359.97438 * 22 20 19 25 25 H 1.09002 * 109.47123 * 59.99872 * 1 2 3 26 26 H 1.09001 * 109.47000 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.46806 * 299.99756 * 1 2 3 28 28 H 1.09010 * 109.46859 * 240.00009 * 2 1 3 29 29 H 1.09002 * 109.47123 * 120.00128 * 2 1 3 30 30 H 1.09000 * 109.47205 * 29.99596 * 4 3 2 31 31 H 1.08994 * 109.47058 * 149.99813 * 4 3 2 32 32 H 0.96997 * 120.00324 * 180.02562 * 8 7 5 33 33 H 1.08990 * 109.47002 * 59.99971 * 15 13 3 34 34 H 1.09002 * 109.46863 * 300.00004 * 15 13 3 35 35 H 1.07993 * 120.00975 * 359.97438 * 18 17 16 36 36 H 1.08005 * 119.95874 * 180.02562 * 19 18 17 37 37 H 1.08002 * 120.03819 * 179.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6858 1.8350 -1.7038 6 1 4.3427 1.2302 -1.0963 7 6 4.1493 2.3905 -2.8776 8 7 3.3494 3.1265 -3.6176 9 14 5.9138 2.0975 -3.4165 10 1 6.1416 0.6409 -3.5943 11 1 6.1612 2.7974 -4.7026 12 1 6.8409 2.6208 -2.3812 13 6 2.2431 2.0165 1.1672 14 8 2.6469 3.1602 1.1672 15 6 1.9914 1.3063 2.4723 16 16 2.3838 2.4179 3.8510 17 6 2.0349 1.4303 5.2680 18 6 1.5756 0.1281 5.1124 19 6 1.3029 -0.6451 6.2239 20 6 1.4872 -0.1246 7.4933 21 9 1.2251 -0.8851 8.5788 22 6 1.9454 1.1745 7.6523 23 9 2.1250 1.6803 8.8922 24 6 2.2196 1.9521 6.5420 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5139 -0.8901 29 1 1.8934 -0.5139 0.8900 30 1 1.5817 1.6877 -2.0284 31 1 2.0955 3.1410 -1.1384 32 1 3.6754 3.5170 -4.4435 33 1 2.6212 0.4186 2.5301 34 1 0.9433 1.0125 2.5298 35 1 1.4318 -0.2793 4.1226 36 1 0.9464 -1.6573 6.1024 37 1 2.5761 2.9641 6.6653 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080094116.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:07 Heat of formation + Delta-G solvation = -116.269991 kcal Electronic energy + Delta-G solvation = -22887.247732 eV Core-core repulsion = 19005.287892 eV Total energy + Delta-G solvation = -3881.959840 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.085 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.54238 -49.61781 -40.72790 -39.79153 -37.03063 -34.94843 -32.36091 -31.98122 -31.60396 -30.87843 -28.59075 -25.03105 -24.48045 -24.06458 -23.90968 -20.36296 -19.40349 -18.63959 -18.60916 -18.18854 -18.05764 -17.51981 -17.38615 -16.80867 -16.58243 -16.04190 -15.98561 -15.65504 -15.19282 -15.05537 -14.78724 -14.71202 -14.42553 -14.28985 -13.95181 -13.60692 -13.37862 -13.28089 -13.18997 -12.97904 -12.65033 -12.53203 -12.46366 -12.15064 -11.89284 -11.73567 -11.22154 -10.79434 -10.69539 -10.63536 -10.10298 -9.49791 -8.52258 -8.22301 -6.36870 -0.29529 -0.09073 0.14274 1.26086 1.37863 1.41938 1.48811 1.69097 2.18968 2.25553 2.42666 2.75909 3.08065 3.24842 3.48876 3.51914 3.83465 3.94523 3.98066 4.05270 4.26338 4.39538 4.44349 4.65649 4.67814 4.79611 4.86706 4.94019 4.96006 5.00688 5.07372 5.22639 5.42887 5.56579 5.60262 5.82004 6.05400 6.64677 6.74466 7.24556 7.39275 8.84646 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.023295 B = 0.002773 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.693823 B =10096.233570 C =10570.104461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.095 3.905 3 N -0.594 5.594 4 C 0.263 3.737 5 C -0.544 4.544 6 H 0.056 0.944 7 C 0.009 3.991 8 N -0.929 5.929 9 Si 0.965 3.035 10 H -0.259 1.259 11 H -0.281 1.281 12 H -0.278 1.278 13 C 0.512 3.488 14 O -0.582 6.582 15 C -0.133 4.133 16 S -0.059 6.059 17 C -0.080 4.080 18 C -0.112 4.112 19 C -0.087 4.087 20 C 0.043 3.957 21 F -0.137 7.137 22 C 0.074 3.926 23 F -0.137 7.137 24 C -0.117 4.117 25 H 0.036 0.964 26 H 0.098 0.902 27 H 0.063 0.937 28 H 0.074 0.926 29 H 0.109 0.891 30 H 0.026 0.974 31 H -0.003 1.003 32 H 0.267 0.733 33 H 0.148 0.852 34 H 0.152 0.848 35 H 0.170 0.830 36 H 0.183 0.817 37 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.994 -12.676 18.664 23.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.027 4.027 3 N -0.325 5.325 4 C 0.142 3.858 5 C -0.582 4.582 6 H 0.075 0.925 7 C -0.191 4.191 8 N -0.568 5.568 9 Si 0.789 3.211 10 H -0.183 1.183 11 H -0.206 1.206 12 H -0.204 1.204 13 C 0.299 3.701 14 O -0.463 6.463 15 C -0.283 4.283 16 S 0.187 5.813 17 C -0.194 4.194 18 C -0.136 4.136 19 C -0.107 4.107 20 C 0.020 3.980 21 F -0.115 7.115 22 C 0.053 3.947 23 F -0.115 7.115 24 C -0.142 4.142 25 H 0.055 0.945 26 H 0.117 0.883 27 H 0.082 0.918 28 H 0.092 0.908 29 H 0.127 0.873 30 H 0.044 0.956 31 H 0.015 0.985 32 H 0.076 0.924 33 H 0.166 0.834 34 H 0.169 0.831 35 H 0.187 0.813 36 H 0.200 0.800 37 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -6.395 -10.827 18.327 22.226 hybrid contribution 0.452 -0.718 -0.097 0.854 sum -5.943 -11.546 18.230 22.382 Atomic orbital electron populations 1.22188 0.94413 1.03758 1.01844 1.21877 0.95410 0.80889 1.04539 1.48186 1.63343 1.15302 1.05688 1.18732 0.95353 0.91587 0.80153 1.21696 0.97909 1.32070 1.06544 0.92549 1.25833 1.02225 0.94490 0.96513 1.70035 1.37811 1.34157 1.14825 0.85508 0.79203 0.79078 0.77288 1.18308 1.20615 1.20381 1.20189 0.77985 0.86341 0.85608 1.90713 1.47749 1.20300 1.87525 1.23949 1.09622 1.02566 0.92173 1.86867 1.81962 1.18626 0.93881 1.21977 1.02313 0.98263 0.96847 1.21505 0.99473 0.91594 1.01020 1.21306 0.98672 1.02487 0.88261 1.17876 1.06340 0.88625 0.85125 1.91512 1.91979 1.74796 1.53260 1.17619 1.04576 0.92220 0.80323 1.91513 1.93249 1.87355 1.39401 1.20609 1.03067 1.01384 0.89113 0.94503 0.88318 0.91775 0.90753 0.87324 0.95650 0.98485 0.92430 0.83403 0.83063 0.81273 0.79998 0.83007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.22 10.24 71.98 0.74 -2.49 16 2 C 0.09 2.37 5.93 86.38 0.51 2.88 16 3 N -0.59 -22.64 2.46 -826.12 -2.03 -24.67 16 4 C 0.26 13.53 5.16 85.63 0.44 13.97 16 5 C -0.54 -30.21 9.39 25.60 0.24 -29.97 16 6 H 0.06 3.06 7.81 -2.91 -0.02 3.04 16 7 C 0.01 0.48 5.46 84.66 0.46 0.94 16 8 N -0.93 -55.26 13.29 21.45 0.28 -54.98 16 9 Si 0.96 43.90 29.54 68.60 2.03 45.92 16 10 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 11 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 12 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 13 C 0.51 19.16 7.69 87.66 0.67 19.83 16 14 O -0.58 -28.65 15.44 -3.04 -0.05 -28.70 16 15 C -0.13 -2.98 3.37 71.24 0.24 -2.74 16 16 S -0.06 -1.52 21.06 -56.49 -1.19 -2.70 16 17 C -0.08 -1.51 6.11 22.60 0.14 -1.37 16 18 C -0.11 -1.44 9.36 22.41 0.21 -1.23 16 19 C -0.09 -1.04 10.01 22.29 0.22 -0.82 16 20 C 0.04 0.77 7.30 22.42 0.16 0.93 16 21 F -0.14 -2.69 17.18 44.97 0.77 -1.92 16 22 C 0.07 1.50 7.30 22.39 0.16 1.67 16 23 F -0.14 -3.09 17.18 44.97 0.77 -2.32 16 24 C -0.12 -2.29 9.77 22.44 0.22 -2.08 16 25 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.06 1.09 7.22 -2.39 -0.02 1.08 16 28 H 0.07 2.06 8.07 -2.38 -0.02 2.04 16 29 H 0.11 1.74 6.44 -2.39 -0.02 1.72 16 30 H 0.03 1.33 8.07 -2.39 -0.02 1.31 16 31 H 0.00 -0.18 7.42 -2.39 -0.02 -0.20 16 32 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 33 H 0.15 2.35 7.00 -2.40 -0.02 2.33 16 34 H 0.15 2.25 6.79 -2.39 -0.02 2.24 16 35 H 0.17 1.19 5.87 -2.91 -0.02 1.18 16 36 H 0.18 0.98 8.06 -2.91 -0.02 0.95 16 37 H 0.15 2.84 8.06 -2.91 -0.02 2.82 16 Total: -1.00 -75.10 339.97 6.12 -68.98 By element: Atomic # 1 Polarization: -0.24 SS G_CDS: 1.10 Total: 0.86 kcal Atomic # 6 Polarization: -4.90 SS G_CDS: 4.43 Total: -0.47 kcal Atomic # 7 Polarization: -77.91 SS G_CDS: -1.74 Total: -79.65 kcal Atomic # 8 Polarization: -28.65 SS G_CDS: -0.05 Total: -28.70 kcal Atomic # 9 Polarization: -5.79 SS G_CDS: 1.54 Total: -4.24 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.92 kcal Atomic # 16 Polarization: -1.52 SS G_CDS: -1.19 Total: -2.70 kcal Total: -75.10 6.12 -68.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080094116.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.291 kcal (2) G-P(sol) polarization free energy of solvation -75.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds