Wall clock time and date at job start Tue Mar 31 2020 11:13:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46498 * 109.47341 * 2 1 4 4 C 1.46503 * 120.00224 * 270.00097 * 3 2 1 5 5 C 1.50699 * 109.46673 * 269.99840 * 4 3 2 6 6 H 1.07991 * 120.00645 * 0.02562 * 5 4 3 7 7 C 1.37884 * 119.99442 * 179.97438 * 5 4 3 8 8 N 1.31512 * 120.00193 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 119.99596 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47221 * 60.00570 * 9 7 5 11 11 H 1.48504 * 109.46831 * 180.02562 * 9 7 5 12 12 H 1.48491 * 109.47215 * 299.99981 * 9 7 5 13 13 C 1.38765 * 119.99924 * 89.99975 * 3 2 1 14 14 C 1.40043 * 118.82452 * 4.99951 * 13 3 2 15 15 C 1.38812 * 119.43177 * 179.97438 * 14 13 3 16 16 C 1.43204 * 121.35016 * 180.02562 * 15 14 13 17 17 N 5.91548 * 95.57970 * 82.96574 * 2 1 3 18 18 C 1.46447 * 117.30613 * 359.97438 * 15 14 13 19 19 C 1.39868 * 121.50376 * 180.02562 * 18 15 14 20 20 C 1.36472 * 119.58515 * 179.97438 * 19 18 15 21 21 Cl 1.73604 * 119.61866 * 179.97438 * 20 19 18 22 22 C 1.39370 * 120.76128 * 359.97438 * 20 19 18 23 23 C 1.36135 * 121.04779 * 0.02562 * 22 20 19 24 24 C 1.40603 * 119.75053 * 0.02562 * 23 22 20 25 25 N 1.31465 * 118.81822 * 184.73293 * 13 3 2 26 26 H 1.09000 * 109.46972 * 59.99869 * 1 2 3 27 27 H 1.08999 * 109.47426 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.47324 * 300.00266 * 1 2 3 29 29 H 1.08998 * 109.47580 * 239.99712 * 2 1 3 30 30 H 1.09000 * 109.46972 * 120.00130 * 2 1 3 31 31 H 1.09005 * 109.46767 * 29.99736 * 4 3 2 32 32 H 1.08996 * 109.47165 * 149.99564 * 4 3 2 33 33 H 0.96997 * 120.00024 * 179.97438 * 8 7 5 34 34 H 1.08001 * 120.28567 * 359.97438 * 14 13 3 35 35 H 1.08000 * 120.20058 * 359.95788 * 19 18 15 36 36 H 1.07994 * 119.47476 * 180.02562 * 22 20 19 37 37 H 1.07999 * 120.12609 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8350 -1.7037 6 1 4.3426 1.2302 -1.0962 7 6 4.1492 2.3897 -2.8779 8 7 3.3492 3.1258 -3.6180 9 14 5.9137 2.0966 -3.4167 10 1 6.1418 0.6400 -3.5936 11 1 6.1612 2.7966 -4.7028 12 1 6.8407 2.6209 -2.3820 13 6 2.2496 2.0353 1.2017 14 6 2.1101 1.3200 2.3976 15 6 2.3390 1.9618 3.6070 16 6 2.2087 1.2698 4.8540 17 7 2.1051 0.7210 5.8431 18 6 2.7202 3.3748 3.5561 19 6 2.9720 4.1063 4.7213 20 6 3.3252 5.4213 4.6283 21 17 3.6372 6.3302 6.0741 22 6 3.4383 6.0428 3.3860 23 6 3.1998 5.3579 2.2339 24 6 2.8327 4.0018 2.2917 25 7 2.5971 3.3030 1.1766 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 1.5817 1.6877 -2.0284 32 1 2.0955 3.1410 -1.1384 33 1 3.6753 3.5163 -4.4439 34 1 1.8269 0.2779 2.3791 35 1 2.8871 3.6335 5.6886 36 1 3.7196 7.0843 3.3366 37 1 3.2914 5.8544 1.2792 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092664946.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:57 Heat of formation + Delta-G solvation = 88.221512 kcal Electronic energy + Delta-G solvation = -22785.258329 eV Core-core repulsion = 19360.811386 eV Total energy + Delta-G solvation = -3424.446943 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 315.083 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.61787 -38.17077 -36.98866 -36.51862 -35.18559 -33.29980 -32.80744 -30.79100 -30.32273 -29.14223 -26.88144 -24.79063 -23.69596 -22.83910 -22.67775 -21.15821 -18.46763 -17.80745 -17.37768 -16.44391 -16.13951 -15.33864 -15.05800 -14.79211 -14.57581 -14.36375 -13.97124 -13.75611 -13.52993 -13.32311 -13.29733 -12.89883 -12.71151 -12.51300 -12.13031 -12.02344 -11.86606 -11.63605 -11.24853 -11.14216 -10.92946 -10.89768 -10.76737 -10.61380 -10.26826 -10.17862 -9.78140 -9.04844 -8.91223 -8.49051 -8.41007 -6.96478 -6.09450 -4.16301 0.16116 1.00785 1.63700 2.14183 2.41165 2.95978 3.16520 3.26955 3.32112 3.33162 3.40686 3.67681 4.30492 4.38068 4.46099 4.70901 4.83765 4.98700 5.08786 5.21778 5.23564 5.30359 5.45054 5.47063 5.57202 5.67281 5.86182 5.89175 5.95802 6.09943 6.19190 6.30339 6.37819 6.42257 6.73753 6.88763 7.24002 7.36213 7.64874 7.82023 8.01313 8.14453 8.59640 8.87792 9.48465 10.96176 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.012027 B = 0.004306 C = 0.003469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2327.565632 B = 6500.865234 C = 8070.581680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.112 3.888 3 N -0.570 5.570 4 C 0.251 3.749 5 C -0.527 4.527 6 H 0.056 0.944 7 C 0.065 3.935 8 N -0.893 5.893 9 Si 0.895 3.105 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.441 3.559 14 C -0.143 4.143 15 C 0.049 3.951 16 C 0.263 3.737 17 N -0.406 5.406 18 C -0.129 4.129 19 C -0.069 4.069 20 C -0.058 4.058 21 Cl -0.081 7.081 22 C -0.087 4.087 23 C -0.088 4.088 24 C 0.205 3.795 25 N -0.516 5.516 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.052 0.948 29 H 0.089 0.911 30 H 0.067 0.933 31 H 0.031 0.969 32 H 0.056 0.944 33 H 0.264 0.736 34 H 0.147 0.853 35 H 0.127 0.873 36 H 0.136 0.864 37 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.612 0.610 12.064 12.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.012 4.012 3 N -0.277 5.277 4 C 0.132 3.868 5 C -0.566 4.566 6 H 0.074 0.926 7 C -0.137 4.137 8 N -0.531 5.531 9 Si 0.723 3.277 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.191 3.809 14 C -0.171 4.171 15 C 0.038 3.962 16 C -0.052 4.052 17 N -0.081 5.081 18 C -0.136 4.136 19 C -0.088 4.088 20 C -0.085 4.085 21 Cl -0.053 7.053 22 C -0.108 4.108 23 C -0.108 4.108 24 C 0.079 3.921 25 N -0.237 5.237 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.071 0.929 29 H 0.108 0.892 30 H 0.085 0.915 31 H 0.049 0.951 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.165 0.835 35 H 0.145 0.855 36 H 0.154 0.846 37 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -3.706 0.273 12.535 13.074 hybrid contribution 1.051 -0.315 0.126 1.104 sum -2.655 -0.042 12.661 12.936 Atomic orbital electron populations 1.22244 0.96375 1.01700 1.02631 1.21526 0.93716 0.82868 1.03092 1.47444 1.63366 1.12240 1.04632 1.19418 0.96143 0.94106 0.77127 1.21363 0.96783 1.32119 1.06329 0.92599 1.24877 0.97623 0.94891 0.96320 1.69908 1.35648 1.33229 1.14342 0.86615 0.84955 0.78278 0.77902 1.20337 1.21186 1.20199 1.18240 0.88730 0.88085 0.85883 1.21981 1.03126 1.01288 0.90708 1.16795 1.01254 0.91484 0.86655 1.25311 0.93972 0.93299 0.92638 1.81245 1.08043 1.08472 1.10378 1.19042 1.08293 0.91812 0.94423 1.20499 0.98228 0.92416 0.97698 1.20365 1.07918 0.92630 0.87633 1.98348 1.94495 1.74722 1.37713 1.20660 0.99515 1.00571 0.90010 1.20755 0.99253 0.91867 0.98905 1.18485 0.93584 0.93785 0.86212 1.67400 1.20842 1.06545 1.28886 0.91794 0.91915 0.92866 0.89219 0.91512 0.95063 0.92643 0.92621 0.83536 0.85511 0.84647 0.83445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.03 10.24 37.16 0.38 -1.65 16 2 C 0.11 1.57 5.94 -4.04 -0.02 1.54 16 3 N -0.57 -10.43 2.56 -175.25 -0.45 -10.88 16 4 C 0.25 5.79 5.20 -5.19 -0.03 5.76 16 5 C -0.53 -13.56 9.39 -34.44 -0.32 -13.88 16 6 H 0.06 1.45 7.81 -52.49 -0.41 1.04 16 7 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 8 N -0.89 -24.72 13.29 55.43 0.74 -23.98 16 9 Si 0.89 20.65 29.54 -169.99 -5.02 15.63 16 10 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 11 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 13 C 0.44 7.72 7.37 -155.70 -1.15 6.57 16 14 C -0.14 -2.00 8.99 -38.69 -0.35 -2.35 16 15 C 0.05 0.67 5.93 -104.45 -0.62 0.05 16 16 C 0.26 3.50 14.36 -22.47 -0.32 3.18 16 17 N -0.41 -5.84 18.54 41.84 0.78 -5.06 16 18 C -0.13 -1.88 5.90 -104.71 -0.62 -2.50 16 19 C -0.07 -0.91 9.21 -39.61 -0.36 -1.27 16 20 C -0.06 -0.73 6.28 -39.80 -0.25 -0.98 16 21 Cl -0.08 -0.93 28.92 -51.86 -1.50 -2.43 16 22 C -0.09 -1.07 9.72 -39.92 -0.39 -1.46 16 23 C -0.09 -1.26 9.99 -39.45 -0.39 -1.66 16 24 C 0.20 3.36 6.61 -84.89 -0.56 2.80 16 25 N -0.52 -9.83 8.87 -10.31 -0.09 -9.93 16 26 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.09 1.32 8.07 -51.93 -0.42 0.90 16 30 H 0.07 0.77 5.89 -51.93 -0.31 0.46 16 31 H 0.03 0.75 8.07 -51.93 -0.42 0.33 16 32 H 0.06 1.42 7.25 -51.93 -0.38 1.04 16 33 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 34 H 0.15 1.65 5.92 -52.49 -0.31 1.33 16 35 H 0.13 1.55 7.35 -52.49 -0.39 1.16 16 36 H 0.14 1.34 8.06 -52.49 -0.42 0.92 16 37 H 0.15 2.06 8.06 -52.49 -0.42 1.64 16 LS Contribution 342.85 15.07 5.17 5.17 Total: -1.00 -28.13 342.85 -9.36 -37.49 By element: Atomic # 1 Polarization: 2.08 SS G_CDS: -3.88 Total: -1.80 kcal Atomic # 6 Polarization: 0.89 SS G_CDS: -5.10 Total: -4.21 kcal Atomic # 7 Polarization: -50.83 SS G_CDS: 0.97 Total: -49.85 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Atomic # 17 Polarization: -0.93 SS G_CDS: -1.50 Total: -2.43 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -28.13 -9.36 -37.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092664946.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.715 kcal (2) G-P(sol) polarization free energy of solvation -28.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds