Wall clock time and date at job start Tue Mar 31 2020 11:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35984 * 117.00036 * 2 1 4 4 C 1.38710 * 119.99959 * 359.97438 * 3 2 1 5 5 C 1.38115 * 120.00052 * 180.02562 * 4 3 2 6 6 C 1.38715 * 119.99843 * 359.97438 * 5 4 3 7 7 O 1.35984 * 119.99936 * 180.02562 * 6 5 4 8 8 C 1.38681 * 120.00072 * 0.02955 * 6 5 4 9 9 C 1.50703 * 119.99987 * 179.97438 * 8 6 5 10 10 N 1.46505 * 109.47064 * 284.99689 * 9 8 6 11 11 S 1.65596 * 119.99941 * 164.99860 * 10 9 8 12 12 O 1.42097 * 104.27711 * 181.07266 * 11 10 9 13 13 O 1.42100 * 104.27686 * 308.93150 * 11 10 9 14 14 C 1.81406 * 104.44797 * 65.00238 * 11 10 9 15 15 C 1.52999 * 109.47078 * 180.02562 * 14 11 10 16 16 C 1.50700 * 109.47373 * 180.02562 * 15 14 11 17 17 H 1.08007 * 119.99502 * 359.97438 * 16 15 14 18 18 C 1.37865 * 120.00347 * 179.97438 * 16 15 14 19 19 N 1.31519 * 120.00180 * 179.97438 * 18 16 15 20 20 Si 1.86810 * 120.00142 * 0.02562 * 18 16 15 21 21 H 1.48499 * 109.46909 * 89.99798 * 20 18 16 22 22 H 1.48502 * 109.46941 * 209.99723 * 20 18 16 23 23 H 1.48498 * 109.46710 * 329.99539 * 20 18 16 24 24 C 1.38151 * 119.99740 * 0.22665 * 8 6 5 25 25 H 1.09001 * 109.46763 * 299.99657 * 1 2 3 26 26 H 1.08999 * 109.47280 * 59.99741 * 1 2 3 27 27 H 1.09001 * 109.46776 * 180.02562 * 1 2 3 28 28 H 1.08000 * 120.00441 * 359.97438 * 4 3 2 29 29 H 1.07995 * 120.00259 * 179.97438 * 5 4 3 30 30 H 0.96703 * 113.99650 * 270.01994 * 7 6 5 31 31 H 1.09002 * 109.47152 * 164.99772 * 9 8 6 32 32 H 1.09001 * 109.46980 * 44.99872 * 9 8 6 33 33 H 0.96997 * 119.99914 * 345.00740 * 10 9 8 34 34 H 1.09004 * 109.47006 * 299.99506 * 14 11 10 35 35 H 1.08991 * 109.46984 * 59.99873 * 14 11 10 36 36 H 1.09004 * 109.46523 * 299.99464 * 15 14 11 37 37 H 1.08996 * 109.47442 * 59.99434 * 15 14 11 38 38 H 0.97001 * 119.99811 * 180.02562 * 19 18 16 39 39 H 1.08000 * 119.99617 * 179.72634 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2909 2.3749 -0.0005 5 6 1.9179 3.6056 -0.0011 6 6 3.3032 3.6781 -0.0005 7 8 3.9205 4.8898 -0.0005 8 6 4.0585 2.5151 -0.0001 9 6 5.5635 2.5939 -0.0001 10 7 6.0324 2.9759 -1.3344 11 16 7.5892 3.4991 -1.5466 12 8 7.6727 3.7975 -2.9333 13 8 7.7538 4.5155 -0.5673 14 6 8.6108 2.0553 -1.1434 15 6 10.0891 2.4160 -1.3029 16 6 10.9378 1.2165 -0.9686 17 1 10.4696 0.2896 -0.6717 18 6 12.3119 1.3021 -1.0418 19 7 13.0526 0.2554 -0.7496 20 14 13.1218 2.9055 -1.5547 21 1 13.3824 3.7355 -0.3513 22 1 14.4052 2.6139 -2.2424 23 1 12.2214 3.6415 -2.4783 24 6 3.4312 1.2842 -0.0049 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 0.2124 2.3185 -0.0014 29 1 1.3298 4.5113 -0.0019 30 1 4.0992 5.2401 -0.8840 31 1 5.9782 1.6218 0.2663 32 1 5.8882 3.3389 0.7263 33 1 5.4310 2.9225 -2.0936 34 1 8.4204 1.7515 -0.1140 35 1 8.3620 1.2349 -1.8164 36 1 10.2798 2.7201 -2.3321 37 1 10.3376 3.2364 -0.6297 38 1 14.0193 0.3159 -0.8008 39 1 4.0195 0.3784 -0.0090 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000119849820.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:17 Heat of formation + Delta-G solvation = -130.168448 kcal Electronic energy + Delta-G solvation = -23757.935333 eV Core-core repulsion = 19986.460327 eV Total energy + Delta-G solvation = -3771.475007 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.102 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.70594 -38.90182 -36.73335 -36.24053 -35.60333 -35.17570 -33.94512 -31.47791 -31.46838 -29.68427 -27.46924 -25.96972 -25.76069 -22.97105 -21.63071 -21.28343 -19.10003 -18.57524 -18.25373 -17.58174 -16.98698 -16.83075 -16.24641 -16.04345 -15.56292 -15.48870 -14.82384 -14.73868 -14.37812 -14.26527 -13.72016 -13.61144 -13.39054 -12.89707 -12.81395 -12.68576 -12.51078 -11.89288 -11.77017 -11.72989 -11.69827 -11.62732 -11.24879 -11.19625 -11.18542 -10.61646 -10.44619 -10.15429 -9.84327 -9.51744 -9.35174 -9.15418 -8.65611 -8.35840 -6.15881 -4.17225 0.56302 0.91811 0.98150 2.86117 2.98000 3.27510 3.33434 3.34828 3.38862 4.03203 4.09962 4.31418 4.36581 4.39944 4.60246 4.67180 4.72995 4.73883 4.94531 5.07127 5.12552 5.16018 5.24951 5.40431 5.51638 5.54581 5.63435 5.75866 5.81768 5.91984 6.14615 6.24362 6.28963 6.82233 6.91345 6.95976 6.99972 7.48660 7.55446 8.37153 8.85261 9.43798 10.96501 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.022374 B = 0.003010 C = 0.002752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.137683 B = 9301.374764 C =10171.972430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.315 6.315 3 C 0.116 3.884 4 C -0.189 4.189 5 C -0.108 4.108 6 C 0.088 3.912 7 O -0.488 6.488 8 C -0.082 4.082 9 C 0.159 3.841 10 N -1.122 6.122 11 S 2.590 3.410 12 O -0.967 6.967 13 O -0.961 6.961 14 C -0.583 4.583 15 C -0.007 4.007 16 C -0.519 4.519 17 H 0.078 0.922 18 C 0.071 3.929 19 N -0.896 5.896 20 Si 0.870 3.130 21 H -0.271 1.271 22 H -0.282 1.282 23 H -0.262 1.262 24 C -0.119 4.119 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.100 0.900 28 H 0.132 0.868 29 H 0.132 0.868 30 H 0.389 0.611 31 H 0.078 0.922 32 H 0.099 0.901 33 H 0.412 0.588 34 H 0.125 0.875 35 H 0.127 0.873 36 H 0.032 0.968 37 H 0.029 0.971 38 H 0.266 0.734 39 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.202 2.866 0.847 27.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.229 6.229 3 C 0.071 3.929 4 C -0.208 4.208 5 C -0.127 4.127 6 C 0.043 3.957 7 O -0.298 6.298 8 C -0.084 4.084 9 C 0.034 3.966 10 N -0.879 5.879 11 S 2.688 3.312 12 O -0.957 6.957 13 O -0.951 6.951 14 C -0.717 4.717 15 C -0.047 4.047 16 C -0.558 4.558 17 H 0.096 0.904 18 C -0.131 4.131 19 N -0.534 5.534 20 Si 0.696 3.304 21 H -0.197 1.197 22 H -0.208 1.208 23 H -0.186 1.186 24 C -0.139 4.139 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.119 0.881 28 H 0.149 0.851 29 H 0.150 0.850 30 H 0.245 0.755 31 H 0.096 0.904 32 H 0.117 0.883 33 H 0.245 0.755 34 H 0.143 0.857 35 H 0.146 0.854 36 H 0.051 0.949 37 H 0.047 0.953 38 H 0.076 0.924 39 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -26.600 3.465 1.366 26.860 hybrid contribution -0.037 0.169 -0.827 0.845 sum -26.637 3.634 0.539 26.890 Atomic orbital electron populations 1.23073 0.78310 1.04102 1.01319 1.86115 1.21405 1.26604 1.88765 1.18963 0.92213 0.84304 0.97464 1.21142 1.00168 0.91795 1.07652 1.21219 0.93809 0.97865 0.99816 1.18237 0.89935 0.84994 1.02575 1.84870 1.79694 1.31743 1.33465 1.19977 0.95615 0.92048 1.00740 1.20119 0.89833 1.01906 0.84788 1.55791 1.31290 1.86193 1.14673 1.05614 0.73743 0.77598 0.74288 1.93563 1.85348 1.84081 1.32734 1.93566 1.84866 1.54386 1.62281 1.30297 1.11780 1.18084 1.11499 1.19411 0.87809 0.99409 0.98035 1.20852 0.90704 0.97113 1.47178 0.90395 1.24988 0.97271 0.96486 0.94386 1.69884 1.05587 1.29519 1.48394 0.86920 0.79457 0.84257 0.79785 1.19653 1.20785 1.18609 1.20307 0.91416 0.97968 1.04179 0.92614 0.92627 0.88118 0.85058 0.84962 0.75486 0.90407 0.88317 0.75469 0.85655 0.85442 0.94943 0.95311 0.92382 0.84139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.81 101.05 0.99 1.13 16 2 O -0.32 -2.85 10.50 -19.69 -0.21 -3.05 16 3 C 0.12 1.09 6.68 -39.25 -0.26 0.83 16 4 C -0.19 -1.53 9.03 -39.45 -0.36 -1.88 16 5 C -0.11 -0.94 9.98 -39.45 -0.39 -1.34 16 6 C 0.09 0.91 6.68 -39.24 -0.26 0.65 16 7 O -0.49 -5.28 12.83 -19.69 -0.25 -5.53 16 8 C -0.08 -0.85 5.29 -104.49 -0.55 -1.40 16 9 C 0.16 1.76 5.86 -5.19 -0.03 1.73 16 10 N -1.12 -13.13 5.88 -11.65 -0.07 -13.20 16 11 S 2.59 41.99 5.46 -107.50 -0.59 41.40 16 12 O -0.97 -18.31 18.08 -57.54 -1.04 -19.35 16 13 O -0.96 -18.26 17.50 -57.54 -1.01 -19.27 16 14 C -0.58 -10.39 6.01 37.16 0.22 -10.16 16 15 C -0.01 -0.17 4.05 -27.88 -0.11 -0.29 16 16 C -0.52 -14.45 9.66 -34.44 -0.33 -14.79 16 17 H 0.08 2.27 7.99 -52.48 -0.42 1.85 16 18 C 0.07 2.05 5.47 -17.82 -0.10 1.96 16 19 N -0.90 -27.09 13.96 55.43 0.77 -26.31 16 20 Si 0.87 21.47 27.47 -169.99 -4.67 16.81 16 21 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 22 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.26 -6.24 6.54 56.52 0.37 -5.87 16 24 C -0.12 -1.18 9.60 -39.45 -0.38 -1.56 16 25 H 0.06 0.23 7.66 -51.93 -0.40 -0.17 16 26 H 0.06 0.22 7.66 -51.93 -0.40 -0.17 16 27 H 0.10 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.13 0.74 6.29 -52.49 -0.33 0.41 16 29 H 0.13 0.92 8.06 -52.49 -0.42 0.49 16 30 H 0.39 2.97 9.06 45.56 0.41 3.38 16 31 H 0.08 0.73 7.95 -51.93 -0.41 0.31 16 32 H 0.10 1.20 7.55 -51.93 -0.39 0.81 16 33 H 0.41 4.05 8.61 -34.47 -0.30 3.75 16 34 H 0.13 2.00 8.14 -51.92 -0.42 1.58 16 35 H 0.13 2.06 8.14 -51.93 -0.42 1.64 16 36 H 0.03 0.76 7.20 -51.93 -0.37 0.39 16 37 H 0.03 0.67 7.57 -51.93 -0.39 0.27 16 38 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 39 H 0.14 1.25 8.00 -52.49 -0.42 0.83 16 LS Contribution 346.90 15.07 5.23 5.23 Total: -1.00 -36.70 346.90 -7.67 -44.37 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -4.28 Total: 4.03 kcal Atomic # 6 Polarization: -23.56 SS G_CDS: -1.56 Total: -25.12 kcal Atomic # 7 Polarization: -40.22 SS G_CDS: 0.71 Total: -39.51 kcal Atomic # 8 Polarization: -44.70 SS G_CDS: -2.51 Total: -47.20 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.67 Total: 16.81 kcal Atomic # 16 Polarization: 41.99 SS G_CDS: -0.59 Total: 41.40 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -36.70 -7.67 -44.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119849820.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.797 kcal (2) G-P(sol) polarization free energy of solvation -36.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds