Wall clock time and date at job start Tue Mar 31 2020 11:21:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35984 * 117.00036 * 2 1 4 4 C 1.38710 * 119.99959 * 359.97438 * 3 2 1 5 5 C 1.38115 * 120.00052 * 180.02562 * 4 3 2 6 6 C 1.38715 * 119.99843 * 359.97438 * 5 4 3 7 7 O 1.35984 * 119.99936 * 180.02562 * 6 5 4 8 8 C 1.38681 * 120.00072 * 0.02955 * 6 5 4 9 9 C 1.50703 * 119.99987 * 179.97438 * 8 6 5 10 10 N 1.46505 * 109.47064 * 284.99689 * 9 8 6 11 11 S 1.65596 * 119.99941 * 164.99860 * 10 9 8 12 12 O 1.42097 * 104.27711 * 181.07266 * 11 10 9 13 13 O 1.42100 * 104.27686 * 308.93150 * 11 10 9 14 14 C 1.81406 * 104.44797 * 65.00238 * 11 10 9 15 15 C 1.52999 * 109.47078 * 180.02562 * 14 11 10 16 16 C 1.50700 * 109.47373 * 180.02562 * 15 14 11 17 17 H 1.08007 * 119.99502 * 359.97438 * 16 15 14 18 18 C 1.37865 * 120.00347 * 179.97438 * 16 15 14 19 19 N 1.31519 * 120.00180 * 179.97438 * 18 16 15 20 20 Si 1.86810 * 120.00142 * 0.02562 * 18 16 15 21 21 H 1.48499 * 109.46909 * 89.99798 * 20 18 16 22 22 H 1.48502 * 109.46941 * 209.99723 * 20 18 16 23 23 H 1.48498 * 109.46710 * 329.99539 * 20 18 16 24 24 C 1.38151 * 119.99740 * 0.22665 * 8 6 5 25 25 H 1.09001 * 109.46763 * 299.99657 * 1 2 3 26 26 H 1.08999 * 109.47280 * 59.99741 * 1 2 3 27 27 H 1.09001 * 109.46776 * 180.02562 * 1 2 3 28 28 H 1.08000 * 120.00441 * 359.97438 * 4 3 2 29 29 H 1.07995 * 120.00259 * 179.97438 * 5 4 3 30 30 H 0.96703 * 113.99650 * 270.01994 * 7 6 5 31 31 H 1.09002 * 109.47152 * 164.99772 * 9 8 6 32 32 H 1.09001 * 109.46980 * 44.99872 * 9 8 6 33 33 H 0.96997 * 119.99914 * 345.00740 * 10 9 8 34 34 H 1.09004 * 109.47006 * 299.99506 * 14 11 10 35 35 H 1.08991 * 109.46984 * 59.99873 * 14 11 10 36 36 H 1.09004 * 109.46523 * 299.99464 * 15 14 11 37 37 H 1.08996 * 109.47442 * 59.99434 * 15 14 11 38 38 H 0.97001 * 119.99811 * 180.02562 * 19 18 16 39 39 H 1.08000 * 119.99617 * 179.72634 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2909 2.3749 -0.0005 5 6 1.9179 3.6056 -0.0011 6 6 3.3032 3.6781 -0.0005 7 8 3.9205 4.8898 -0.0005 8 6 4.0585 2.5151 -0.0001 9 6 5.5635 2.5939 -0.0001 10 7 6.0324 2.9759 -1.3344 11 16 7.5892 3.4991 -1.5466 12 8 7.6727 3.7975 -2.9333 13 8 7.7538 4.5155 -0.5673 14 6 8.6108 2.0553 -1.1434 15 6 10.0891 2.4160 -1.3029 16 6 10.9378 1.2165 -0.9686 17 1 10.4696 0.2896 -0.6717 18 6 12.3119 1.3021 -1.0418 19 7 13.0526 0.2554 -0.7496 20 14 13.1218 2.9055 -1.5547 21 1 13.3824 3.7355 -0.3513 22 1 14.4052 2.6139 -2.2424 23 1 12.2214 3.6415 -2.4783 24 6 3.4312 1.2842 -0.0049 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 0.2124 2.3185 -0.0014 29 1 1.3298 4.5113 -0.0019 30 1 4.0992 5.2401 -0.8840 31 1 5.9782 1.6218 0.2663 32 1 5.8882 3.3389 0.7263 33 1 5.4310 2.9225 -2.0936 34 1 8.4204 1.7515 -0.1140 35 1 8.3620 1.2349 -1.8164 36 1 10.2798 2.7201 -2.3321 37 1 10.3376 3.2364 -0.6297 38 1 14.0193 0.3159 -0.8008 39 1 4.0195 0.3784 -0.0090 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000119849820.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:16 Heat of formation + Delta-G solvation = -160.756359 kcal Electronic energy + Delta-G solvation = -23759.261725 eV Core-core repulsion = 19986.460327 eV Total energy + Delta-G solvation = -3772.801398 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.102 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.36984 -39.56777 -38.15264 -37.05542 -36.97652 -36.07142 -35.87427 -33.45321 -32.21753 -30.34715 -27.96603 -27.86583 -26.57383 -23.66478 -23.17182 -22.30635 -20.37020 -19.41785 -19.30096 -18.95092 -18.27003 -17.67191 -17.29014 -16.98485 -16.67395 -16.37274 -16.27906 -15.91977 -15.51181 -15.17277 -15.02567 -14.80877 -14.33178 -14.27385 -13.77678 -13.53953 -13.49771 -13.19860 -13.18760 -13.07950 -13.04602 -12.92442 -12.72057 -12.32535 -12.21415 -11.93021 -11.78599 -11.69624 -11.32977 -11.30184 -10.83105 -10.44773 -10.00724 -9.03468 -8.35281 -6.40942 -0.71911 0.15085 0.29690 1.33564 1.35136 1.45332 1.83380 2.30897 2.35010 2.58997 2.77509 2.98913 3.26736 3.36164 3.58067 3.79438 3.91870 4.07094 4.10619 4.20036 4.33903 4.40649 4.43087 4.52491 4.59343 4.69537 4.77036 4.81934 4.96911 5.08827 5.10524 5.14764 5.26913 5.44828 5.49192 5.57840 6.06948 6.18320 6.39268 6.65500 6.83358 7.23556 8.80306 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.022374 B = 0.003010 C = 0.002752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.137683 B = 9301.374764 C =10171.972430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.335 6.335 3 C 0.107 3.893 4 C -0.182 4.182 5 C -0.109 4.109 6 C 0.074 3.926 7 O -0.504 6.504 8 C -0.090 4.090 9 C 0.153 3.847 10 N -1.102 6.102 11 S 2.627 3.373 12 O -0.991 6.991 13 O -0.986 6.986 14 C -0.592 4.592 15 C -0.018 4.018 16 C -0.527 4.527 17 H 0.050 0.950 18 C 0.012 3.988 19 N -0.941 5.941 20 Si 0.926 3.074 21 H -0.261 1.261 22 H -0.275 1.275 23 H -0.248 1.248 24 C -0.129 4.129 25 H 0.066 0.934 26 H 0.067 0.933 27 H 0.116 0.884 28 H 0.158 0.842 29 H 0.151 0.849 30 H 0.400 0.600 31 H 0.095 0.905 32 H 0.087 0.913 33 H 0.424 0.576 34 H 0.141 0.859 35 H 0.141 0.859 36 H 0.032 0.968 37 H 0.032 0.968 38 H 0.269 0.731 39 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.413 3.853 0.540 29.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.249 6.249 3 C 0.062 3.938 4 C -0.200 4.200 5 C -0.128 4.128 6 C 0.028 3.972 7 O -0.315 6.315 8 C -0.093 4.093 9 C 0.028 3.972 10 N -0.863 5.863 11 S 2.723 3.277 12 O -0.982 6.982 13 O -0.976 6.976 14 C -0.723 4.723 15 C -0.057 4.057 16 C -0.566 4.566 17 H 0.068 0.932 18 C -0.186 4.186 19 N -0.581 5.581 20 Si 0.748 3.252 21 H -0.186 1.186 22 H -0.200 1.200 23 H -0.172 1.172 24 C -0.149 4.149 25 H 0.085 0.915 26 H 0.086 0.914 27 H 0.134 0.866 28 H 0.175 0.825 29 H 0.168 0.832 30 H 0.257 0.743 31 H 0.114 0.886 32 H 0.106 0.894 33 H 0.260 0.740 34 H 0.159 0.841 35 H 0.160 0.840 36 H 0.051 0.949 37 H 0.050 0.950 38 H 0.078 0.922 39 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -28.820 4.446 1.045 29.179 hybrid contribution 0.468 -0.240 -0.690 0.867 sum -28.352 4.205 0.355 28.665 Atomic orbital electron populations 1.23363 0.76347 1.05595 1.02411 1.86093 1.23526 1.26549 1.88695 1.19113 0.92281 0.85024 0.97423 1.21426 1.01479 0.91010 1.06121 1.21435 0.93297 0.98897 0.99123 1.18444 0.90733 0.84732 1.03275 1.84837 1.79943 1.32082 1.34663 1.19866 0.94913 0.92455 1.02023 1.20260 0.90818 1.02429 0.83673 1.55299 1.29464 1.85806 1.15758 1.04311 0.74087 0.76375 0.72954 1.93525 1.86162 1.84316 1.34166 1.93535 1.85741 1.55263 1.63047 1.30317 1.08823 1.19996 1.13195 1.19378 0.90804 0.97644 0.97895 1.21200 0.91427 0.97735 1.46221 0.93210 1.25888 0.98169 0.99926 0.94646 1.70015 1.06058 1.31819 1.50224 0.86015 0.78818 0.80251 0.80093 1.18555 1.20027 1.17160 1.20412 0.92093 0.97913 1.04458 0.91520 0.91431 0.86624 0.82458 0.83169 0.74270 0.88650 0.89446 0.73959 0.84071 0.84031 0.94928 0.94960 0.92160 0.83779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.81 113.37 1.11 1.24 16 2 O -0.33 -5.45 10.50 -93.38 -0.98 -6.43 16 3 C 0.11 1.83 6.68 22.49 0.15 1.98 16 4 C -0.18 -2.48 9.03 22.35 0.20 -2.28 16 5 C -0.11 -1.66 9.98 22.35 0.22 -1.43 16 6 C 0.07 1.41 6.68 22.49 0.15 1.56 16 7 O -0.50 -10.31 12.83 -93.38 -1.20 -11.51 16 8 C -0.09 -1.76 5.29 -19.78 -0.10 -1.87 16 9 C 0.15 3.20 5.86 85.63 0.50 3.70 16 10 N -1.10 -24.07 5.88 -190.77 -1.12 -25.19 16 11 S 2.63 81.64 5.46 -56.49 -0.31 81.33 16 12 O -0.99 -36.13 18.08 -127.65 -2.31 -38.43 16 13 O -0.99 -36.31 17.50 -127.65 -2.23 -38.54 16 14 C -0.59 -20.50 6.01 71.98 0.43 -20.07 16 15 C -0.02 -0.84 4.05 29.85 0.12 -0.72 16 16 C -0.53 -29.69 9.66 25.60 0.25 -29.44 16 17 H 0.05 2.99 7.99 -2.91 -0.02 2.97 16 18 C 0.01 0.70 5.47 84.65 0.46 1.16 16 19 N -0.94 -58.06 13.96 21.44 0.30 -57.76 16 20 Si 0.93 43.88 27.47 68.60 1.88 45.76 16 21 H -0.26 -11.86 7.11 99.48 0.71 -11.16 16 22 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 23 H -0.25 -11.11 6.54 99.48 0.65 -10.46 16 24 C -0.13 -2.39 9.60 22.35 0.21 -2.18 16 25 H 0.07 0.36 7.66 -2.39 -0.02 0.34 16 26 H 0.07 0.35 7.66 -2.39 -0.02 0.33 16 27 H 0.12 0.50 8.14 -2.39 -0.02 0.48 16 28 H 0.16 1.24 6.29 -2.91 -0.02 1.22 16 29 H 0.15 1.67 8.06 -2.91 -0.02 1.65 16 30 H 0.40 5.65 9.06 -74.06 -0.67 4.98 16 31 H 0.10 1.64 7.95 -2.39 -0.02 1.62 16 32 H 0.09 2.06 7.55 -2.39 -0.02 2.04 16 33 H 0.42 7.55 8.61 -96.75 -0.83 6.72 16 34 H 0.14 4.36 8.14 -2.39 -0.02 4.34 16 35 H 0.14 4.44 8.14 -2.39 -0.02 4.42 16 36 H 0.03 1.50 7.20 -2.38 -0.02 1.48 16 37 H 0.03 1.46 7.57 -2.39 -0.02 1.44 16 38 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 39 H 0.14 2.43 8.00 -2.91 -0.02 2.41 16 Total: -1.00 -78.76 346.90 -2.72 -81.48 By element: Atomic # 1 Polarization: 18.09 SS G_CDS: -0.47 Total: 17.62 kcal Atomic # 6 Polarization: -52.05 SS G_CDS: 3.71 Total: -48.33 kcal Atomic # 7 Polarization: -82.12 SS G_CDS: -0.82 Total: -82.95 kcal Atomic # 8 Polarization: -88.19 SS G_CDS: -6.72 Total: -94.91 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 1.88 Total: 45.76 kcal Atomic # 16 Polarization: 81.64 SS G_CDS: -0.31 Total: 81.33 kcal Total: -78.76 -2.72 -81.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119849820.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.281 kcal (2) G-P(sol) polarization free energy of solvation -78.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds