Wall clock time and date at job start Tue Mar 31 2020 11:19:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.36029 * 117.00423 * 2 1 4 4 C 1.38675 * 119.98094 * 359.73034 * 3 2 1 5 5 C 1.38111 * 120.03026 * 180.27578 * 4 3 2 6 6 C 1.38877 * 120.00298 * 359.97438 * 5 4 3 7 7 N 1.39939 * 120.01672 * 179.97438 * 6 5 4 8 8 C 1.46498 * 120.00049 * 180.02562 * 7 6 5 9 9 C 1.46504 * 119.99839 * 0.02562 * 7 6 5 10 10 C 1.53007 * 109.46530 * 90.00418 * 9 7 6 11 11 C 1.53002 * 109.46752 * 179.97438 * 10 9 7 12 12 S 1.80993 * 109.47117 * 180.02562 * 11 10 9 13 13 C 1.76195 * 100.00176 * 179.97438 * 12 11 10 14 14 H 1.08001 * 120.00396 * 359.97438 * 13 12 11 15 15 C 1.38800 * 120.00499 * 179.97438 * 13 12 11 16 16 N 1.31634 * 119.99672 * 0.02562 * 15 13 12 17 17 Si 1.86789 * 120.00511 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47349 * 60.00241 * 17 15 13 19 19 H 1.48500 * 109.47330 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47453 * 300.00383 * 17 15 13 21 21 C 1.38841 * 119.96903 * 359.97438 * 6 5 4 22 22 C 1.38216 * 119.96687 * 0.02562 * 21 6 5 23 23 Cl 1.73606 * 120.00062 * 179.97438 * 22 21 6 24 24 H 1.08999 * 109.46955 * 59.99760 * 1 2 3 25 25 H 1.09000 * 109.47198 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46828 * 300.00027 * 1 2 3 27 27 H 1.08003 * 119.98631 * 0.24835 * 4 3 2 28 28 H 1.08005 * 120.00006 * 179.97438 * 5 4 3 29 29 H 1.08997 * 109.47159 * 89.99262 * 8 7 6 30 30 H 1.09000 * 109.46749 * 210.00045 * 8 7 6 31 31 H 1.09001 * 109.47087 * 329.99731 * 8 7 6 32 32 H 1.08994 * 109.46844 * 210.00342 * 9 7 6 33 33 H 1.08994 * 109.47163 * 330.00728 * 9 7 6 34 34 H 1.09001 * 109.47200 * 299.99772 * 10 9 7 35 35 H 1.08992 * 109.47005 * 59.99766 * 10 9 7 36 36 H 1.09001 * 109.47087 * 299.99848 * 11 10 9 37 37 H 1.08998 * 109.46964 * 59.99759 * 11 10 9 38 38 H 0.97002 * 120.00314 * 179.97438 * 16 15 13 39 39 H 1.07992 * 120.01503 * 180.02562 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0466 1.2120 0.0000 4 6 1.2911 2.3748 -0.0057 5 6 1.9171 3.6059 -0.0114 6 6 3.3039 3.6797 -0.0110 7 7 3.9386 4.9269 -0.0174 8 6 5.4015 5.0044 -0.0175 9 6 3.1400 6.1551 -0.0239 10 6 2.8618 6.5901 1.4164 11 6 2.0284 7.8732 1.4096 12 16 1.7000 8.3883 3.1133 13 6 0.7538 9.8445 2.8158 14 1 0.5479 10.1572 1.8027 15 6 0.2730 10.5901 3.8833 16 7 0.5243 10.2094 5.1180 17 14 -0.7294 12.1343 3.5678 18 1 -1.9493 11.7838 2.7969 19 1 -1.1218 12.7432 4.8641 20 1 0.0851 13.1033 2.7915 21 6 4.0604 2.5155 -0.0043 22 6 3.4326 1.2842 0.0015 23 17 4.3777 -0.1721 0.0092 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 0.2125 2.3178 -0.0060 28 1 1.3282 4.5112 -0.0162 29 1 5.7645 5.0181 -1.0452 30 1 5.7171 5.9150 0.4916 31 1 5.8113 4.1375 0.5009 32 1 3.6881 6.9421 -0.5418 33 1 2.1959 5.9719 -0.5368 34 1 2.3137 5.8031 1.9343 35 1 3.8059 6.7732 1.9293 36 1 2.5769 8.6600 0.8919 37 1 1.0843 7.6904 0.8965 38 1 0.1887 10.7306 5.8641 39 1 5.1389 2.5721 -0.0035 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121924872.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:28 Heat of formation + Delta-G solvation = -19.915797 kcal Electronic energy + Delta-G solvation = -20812.077517 eV Core-core repulsion = 17486.092588 eV Total energy + Delta-G solvation = -3325.984928 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.080 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.35279 -38.57998 -36.74253 -35.78166 -33.05839 -32.44949 -31.05046 -29.47204 -27.90001 -26.97711 -25.60969 -24.42663 -22.65329 -21.69170 -20.56176 -18.53427 -17.51110 -17.00962 -16.66400 -15.88544 -15.46127 -14.97229 -14.82936 -14.76474 -14.45193 -14.16289 -14.01527 -13.56554 -13.25689 -13.02123 -12.90638 -12.31258 -12.21074 -12.01235 -11.79005 -11.68453 -11.57563 -11.36980 -11.11188 -11.07191 -10.90835 -10.81817 -10.71633 -10.43956 -9.77604 -9.30325 -9.08075 -8.90810 -8.34506 -7.13369 -6.56668 -6.25401 -3.96339 1.04725 1.41131 2.07080 2.99195 3.18292 3.20783 3.22836 3.25971 3.55118 3.60849 4.19630 4.58301 4.79315 4.87270 4.98311 5.00109 5.09953 5.11164 5.12826 5.22226 5.29873 5.33741 5.37336 5.51865 5.56407 5.59777 5.62660 5.70541 5.77307 5.89406 6.07549 6.17490 6.27307 6.33590 6.47201 6.68134 7.15060 7.18520 7.40796 7.57218 8.33324 9.20641 10.82664 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.020519 B = 0.002509 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.269476 B =11157.935812 C =11952.743548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.312 6.312 3 C 0.072 3.928 4 C -0.144 4.144 5 C -0.150 4.150 6 C 0.202 3.798 7 N -0.628 5.628 8 C 0.092 3.908 9 C 0.127 3.873 10 C -0.117 4.117 11 C -0.113 4.113 12 S -0.131 6.131 13 C -0.518 4.518 14 H 0.072 0.928 15 C 0.071 3.929 16 N -0.870 5.870 17 Si 0.918 3.082 18 H -0.274 1.274 19 H -0.283 1.283 20 H -0.274 1.274 21 C -0.160 4.160 22 C -0.018 4.018 23 Cl -0.065 7.065 24 H 0.053 0.947 25 H 0.097 0.903 26 H 0.055 0.945 27 H 0.136 0.864 28 H 0.135 0.865 29 H 0.047 0.953 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.268 0.732 39 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.196 -17.811 -12.916 22.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.226 6.226 3 C 0.025 3.975 4 C -0.164 4.164 5 C -0.172 4.172 6 C 0.100 3.900 7 N -0.339 5.339 8 C -0.051 4.051 9 C 0.002 3.998 10 C -0.156 4.156 11 C -0.262 4.262 12 S 0.097 5.903 13 C -0.666 4.666 14 H 0.090 0.910 15 C -0.138 4.138 16 N -0.505 5.505 17 Si 0.745 3.255 18 H -0.199 1.199 19 H -0.208 1.208 20 H -0.199 1.199 21 C -0.183 4.183 22 C -0.046 4.046 23 Cl -0.036 7.036 24 H 0.072 0.928 25 H 0.116 0.884 26 H 0.074 0.926 27 H 0.153 0.847 28 H 0.153 0.847 29 H 0.066 0.934 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 5.747 -18.386 -11.736 22.557 hybrid contribution -1.186 1.678 -1.197 2.378 sum 4.561 -16.709 -12.933 21.616 Atomic orbital electron populations 1.23028 0.78624 1.03758 1.01314 1.86122 1.20978 1.25929 1.89540 1.18385 0.90268 0.85081 1.03726 1.20966 0.99939 0.91067 1.04400 1.20702 0.92643 0.98111 1.05791 1.17576 0.91347 0.85227 0.95850 1.46511 1.05049 1.02426 1.79870 1.21650 0.79674 1.02833 1.00970 1.21589 0.95698 0.85080 0.97389 1.21732 1.00640 0.97099 0.96168 1.23202 1.00952 0.98392 1.03637 1.84692 1.70072 1.33137 1.02421 1.22644 1.38321 1.10340 0.95289 0.91005 1.25017 0.96090 0.98158 0.94512 1.70012 1.43621 1.38815 0.98064 0.86225 0.80016 0.81621 0.77683 1.19933 1.20804 1.19929 1.20312 1.00095 0.88756 1.09126 1.19779 0.88437 0.87899 1.08485 1.98349 1.71998 1.36238 1.97017 0.92826 0.88413 0.92617 0.84658 0.84702 0.93430 0.91073 0.91526 0.90642 0.90732 0.91278 0.91412 0.92096 0.92114 0.92221 0.84416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.31 -3.58 9.95 -19.83 -0.20 -3.78 16 3 C 0.07 0.88 6.68 -39.22 -0.26 0.62 16 4 C -0.14 -1.62 9.03 -39.47 -0.36 -1.97 16 5 C -0.15 -1.79 9.21 -39.39 -0.36 -2.15 16 6 C 0.20 2.45 6.55 -83.70 -0.55 1.90 16 7 N -0.63 -7.17 3.01 -179.57 -0.54 -7.71 16 8 C 0.09 0.84 10.19 59.85 0.61 1.45 16 9 C 0.13 1.52 5.16 -4.04 -0.02 1.50 16 10 C -0.12 -1.79 5.54 -26.73 -0.15 -1.94 16 11 C -0.11 -2.15 5.67 37.16 0.21 -1.93 16 12 S -0.13 -3.38 21.44 -107.50 -2.30 -5.68 16 13 C -0.52 -14.62 9.50 30.94 0.29 -14.32 16 14 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 15 C 0.07 2.01 5.49 -17.43 -0.10 1.91 16 16 N -0.87 -25.82 13.22 55.49 0.73 -25.08 16 17 Si 0.92 21.27 29.55 -169.99 -5.02 16.25 16 18 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 19 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 20 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 21 C -0.16 -1.85 8.99 -39.37 -0.35 -2.21 16 22 C -0.02 -0.22 6.33 -39.39 -0.25 -0.47 16 23 Cl -0.06 -0.75 28.50 -51.86 -1.48 -2.23 16 24 H 0.05 0.35 7.65 -51.93 -0.40 -0.05 16 25 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.39 7.67 -51.93 -0.40 -0.01 16 27 H 0.14 1.22 6.29 -52.48 -0.33 0.89 16 28 H 0.14 1.55 6.14 -52.48 -0.32 1.23 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.63 8.07 -51.93 -0.42 0.21 16 31 H 0.07 0.55 6.20 -51.93 -0.32 0.23 16 32 H 0.08 0.83 8.07 -51.93 -0.42 0.41 16 33 H 0.07 0.85 6.20 -51.93 -0.32 0.53 16 34 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 36 H 0.06 1.14 8.14 -51.91 -0.42 0.72 16 37 H 0.06 1.13 8.14 -51.92 -0.42 0.71 16 38 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 39 H 0.14 1.38 6.14 -52.49 -0.32 1.06 16 LS Contribution 352.54 15.07 5.31 5.31 Total: -1.00 -31.86 352.54 -9.12 -40.98 By element: Atomic # 1 Polarization: 3.70 SS G_CDS: -5.33 Total: -1.63 kcal Atomic # 6 Polarization: -16.13 SS G_CDS: -0.29 Total: -16.43 kcal Atomic # 7 Polarization: -32.99 SS G_CDS: 0.19 Total: -32.80 kcal Atomic # 8 Polarization: -3.58 SS G_CDS: -0.20 Total: -3.78 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: -3.38 SS G_CDS: -2.30 Total: -5.68 kcal Atomic # 17 Polarization: -0.75 SS G_CDS: -1.48 Total: -2.23 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.86 -9.12 -40.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121924872.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.069 kcal (2) G-P(sol) polarization free energy of solvation -31.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds