Wall clock time and date at job start Tue Mar 31 2020 11:19:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.36029 * 117.00423 * 2 1 4 4 C 1.38675 * 119.98094 * 359.73034 * 3 2 1 5 5 C 1.38111 * 120.03026 * 180.27578 * 4 3 2 6 6 C 1.38877 * 120.00298 * 359.97438 * 5 4 3 7 7 N 1.39939 * 120.01672 * 179.97438 * 6 5 4 8 8 C 1.46498 * 120.00049 * 180.02562 * 7 6 5 9 9 C 1.46504 * 119.99839 * 0.02562 * 7 6 5 10 10 C 1.53007 * 109.46530 * 90.00418 * 9 7 6 11 11 C 1.53002 * 109.46752 * 179.97438 * 10 9 7 12 12 S 1.80993 * 109.47117 * 180.02562 * 11 10 9 13 13 C 1.76195 * 100.00176 * 179.97438 * 12 11 10 14 14 H 1.08001 * 120.00396 * 359.97438 * 13 12 11 15 15 C 1.38800 * 120.00499 * 179.97438 * 13 12 11 16 16 N 1.31634 * 119.99672 * 0.02562 * 15 13 12 17 17 Si 1.86789 * 120.00511 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47349 * 60.00241 * 17 15 13 19 19 H 1.48500 * 109.47330 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47453 * 300.00383 * 17 15 13 21 21 C 1.38841 * 119.96903 * 359.97438 * 6 5 4 22 22 C 1.38216 * 119.96687 * 0.02562 * 21 6 5 23 23 Cl 1.73606 * 120.00062 * 179.97438 * 22 21 6 24 24 H 1.08999 * 109.46955 * 59.99760 * 1 2 3 25 25 H 1.09000 * 109.47198 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46828 * 300.00027 * 1 2 3 27 27 H 1.08003 * 119.98631 * 0.24835 * 4 3 2 28 28 H 1.08005 * 120.00006 * 179.97438 * 5 4 3 29 29 H 1.08997 * 109.47159 * 89.99262 * 8 7 6 30 30 H 1.09000 * 109.46749 * 210.00045 * 8 7 6 31 31 H 1.09001 * 109.47087 * 329.99731 * 8 7 6 32 32 H 1.08994 * 109.46844 * 210.00342 * 9 7 6 33 33 H 1.08994 * 109.47163 * 330.00728 * 9 7 6 34 34 H 1.09001 * 109.47200 * 299.99772 * 10 9 7 35 35 H 1.08992 * 109.47005 * 59.99766 * 10 9 7 36 36 H 1.09001 * 109.47087 * 299.99848 * 11 10 9 37 37 H 1.08998 * 109.46964 * 59.99759 * 11 10 9 38 38 H 0.97002 * 120.00314 * 179.97438 * 16 15 13 39 39 H 1.07992 * 120.01503 * 180.02562 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0466 1.2120 0.0000 4 6 1.2911 2.3748 -0.0057 5 6 1.9171 3.6059 -0.0114 6 6 3.3039 3.6797 -0.0110 7 7 3.9386 4.9269 -0.0174 8 6 5.4015 5.0044 -0.0175 9 6 3.1400 6.1551 -0.0239 10 6 2.8618 6.5901 1.4164 11 6 2.0284 7.8732 1.4096 12 16 1.7000 8.3883 3.1133 13 6 0.7538 9.8445 2.8158 14 1 0.5479 10.1572 1.8027 15 6 0.2730 10.5901 3.8833 16 7 0.5243 10.2094 5.1180 17 14 -0.7294 12.1343 3.5678 18 1 -1.9493 11.7838 2.7969 19 1 -1.1218 12.7432 4.8641 20 1 0.0851 13.1033 2.7915 21 6 4.0604 2.5155 -0.0043 22 6 3.4326 1.2842 0.0015 23 17 4.3777 -0.1721 0.0092 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 0.2125 2.3178 -0.0060 28 1 1.3282 4.5112 -0.0162 29 1 5.7645 5.0181 -1.0452 30 1 5.7171 5.9150 0.4916 31 1 5.8113 4.1375 0.5009 32 1 3.6881 6.9421 -0.5418 33 1 2.1959 5.9719 -0.5368 34 1 2.3137 5.8031 1.9343 35 1 3.8059 6.7732 1.9293 36 1 2.5769 8.6600 0.8919 37 1 1.0843 7.6904 0.8965 38 1 0.1887 10.7306 5.8641 39 1 5.1389 2.5721 -0.0035 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121924872.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:27 Heat of formation + Delta-G solvation = -37.080772 kcal Electronic energy + Delta-G solvation = -20812.821846 eV Core-core repulsion = 17486.092588 eV Total energy + Delta-G solvation = -3326.729258 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.080 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.20017 -39.42888 -37.63602 -36.71685 -34.61209 -34.19292 -31.94586 -30.31455 -28.74052 -28.01620 -27.56051 -25.40603 -23.61876 -22.80654 -21.51944 -19.56050 -19.36477 -17.87389 -17.56651 -16.88709 -16.64015 -16.46880 -16.18937 -15.72539 -15.62084 -15.40774 -14.94082 -14.75766 -14.42736 -14.01627 -13.73176 -13.61599 -13.27806 -13.21041 -13.04149 -12.88603 -12.69138 -12.60813 -12.45877 -12.43081 -12.13922 -11.95302 -11.84182 -11.57931 -11.50102 -11.12566 -10.34568 -10.19675 -9.80290 -8.66066 -8.36610 -8.01536 -6.12774 0.15987 0.52153 1.17464 1.32003 1.41187 1.48223 1.74422 2.19675 2.30817 2.46494 2.70251 2.97890 3.33084 3.76536 3.90520 3.99946 4.15810 4.17391 4.30877 4.38398 4.40308 4.45050 4.45790 4.51784 4.68881 4.70792 4.74278 4.78599 4.85279 4.86251 4.98153 5.08899 5.16547 5.29824 5.35324 5.40473 5.48964 6.18701 6.30882 6.36065 6.54373 7.05816 8.72616 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.020519 B = 0.002509 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.269476 B =11157.935812 C =11952.743548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.329 6.329 3 C 0.063 3.937 4 C -0.146 4.146 5 C -0.160 4.160 6 C 0.191 3.809 7 N -0.630 5.630 8 C 0.087 3.913 9 C 0.137 3.863 10 C -0.103 4.103 11 C -0.086 4.086 12 S -0.205 6.205 13 C -0.536 4.536 14 H 0.075 0.925 15 C 0.014 3.986 16 N -0.909 5.909 17 Si 0.993 3.007 18 H -0.264 1.264 19 H -0.277 1.277 20 H -0.264 1.264 21 C -0.160 4.160 22 C -0.034 4.034 23 Cl -0.064 7.064 24 H 0.064 0.936 25 H 0.117 0.883 26 H 0.059 0.941 27 H 0.155 0.845 28 H 0.138 0.862 29 H 0.062 0.938 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.092 0.908 33 H 0.083 0.917 34 H 0.055 0.945 35 H 0.061 0.939 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.271 0.729 39 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.857 -17.569 -14.515 23.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.243 6.243 3 C 0.016 3.984 4 C -0.165 4.165 5 C -0.183 4.183 6 C 0.088 3.912 7 N -0.341 5.341 8 C -0.055 4.055 9 C 0.012 3.988 10 C -0.143 4.143 11 C -0.235 4.235 12 S 0.023 5.977 13 C -0.684 4.684 14 H 0.093 0.907 15 C -0.191 4.191 16 N -0.546 5.546 17 Si 0.815 3.185 18 H -0.189 1.189 19 H -0.202 1.202 20 H -0.188 1.188 21 C -0.183 4.183 22 C -0.062 4.062 23 Cl -0.035 7.035 24 H 0.083 0.917 25 H 0.135 0.865 26 H 0.078 0.922 27 H 0.172 0.828 28 H 0.155 0.845 29 H 0.081 0.919 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.110 0.890 33 H 0.101 0.899 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.080 0.920 39 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 5.419 -18.163 -13.345 23.181 hybrid contribution -1.061 1.482 -0.730 1.964 sum 4.359 -16.681 -14.076 22.257 Atomic orbital electron populations 1.23295 0.76778 1.05368 1.02049 1.86101 1.22976 1.25764 1.89471 1.18573 0.90493 0.85653 1.03652 1.21178 1.00947 0.90577 1.03788 1.20854 0.92856 0.98512 1.06044 1.17720 0.91596 0.85627 0.96223 1.46556 1.05860 1.01865 1.79846 1.21808 0.78355 1.03288 1.02083 1.21426 0.96751 0.85905 0.94729 1.21620 0.99249 0.94736 0.98675 1.23123 1.01974 1.00055 0.98365 1.84746 1.70272 1.33342 1.09291 1.23012 1.38637 1.11075 0.95647 0.90680 1.26075 0.97165 1.01723 0.94121 1.70158 1.44877 1.40409 0.99110 0.85079 0.78445 0.77120 0.77877 1.18853 1.20209 1.18839 1.20445 1.00776 0.88423 1.08656 1.19998 0.88866 0.88235 1.09097 1.98341 1.71936 1.36215 1.97048 0.91703 0.86498 0.92192 0.82797 0.84453 0.91930 0.90800 0.90927 0.88965 0.89864 0.92597 0.92070 0.91361 0.91476 0.92042 0.83164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.81 113.37 1.11 1.38 16 2 O -0.33 -7.23 9.95 -93.88 -0.93 -8.17 16 3 C 0.06 1.49 6.68 22.51 0.15 1.64 16 4 C -0.15 -3.10 9.03 22.34 0.20 -2.90 16 5 C -0.16 -3.64 9.21 22.39 0.21 -3.43 16 6 C 0.19 4.36 6.55 38.14 0.25 4.61 16 7 N -0.63 -13.24 3.01 -722.03 -2.18 -15.41 16 8 C 0.09 1.41 10.19 127.77 1.30 2.71 16 9 C 0.14 2.99 5.16 86.38 0.45 3.43 16 10 C -0.10 -3.05 5.54 30.60 0.17 -2.88 16 11 C -0.09 -3.20 5.67 71.98 0.41 -2.79 16 12 S -0.21 -10.72 21.44 -56.49 -1.21 -11.93 16 13 C -0.54 -30.38 9.50 67.95 0.65 -29.73 16 14 H 0.08 4.05 7.80 -2.91 -0.02 4.03 16 15 C 0.01 0.78 5.49 84.86 0.47 1.25 16 16 N -0.91 -54.71 13.22 21.65 0.29 -54.43 16 17 Si 0.99 43.27 29.55 68.60 2.03 45.30 16 18 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 19 H -0.28 -11.70 7.11 99.48 0.71 -11.00 16 20 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 21 C -0.16 -3.53 8.99 22.41 0.20 -3.33 16 22 C -0.03 -0.81 6.33 22.40 0.14 -0.67 16 23 Cl -0.06 -1.45 28.50 -2.72 -0.08 -1.52 16 24 H 0.06 0.73 7.65 -2.39 -0.02 0.71 16 25 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.06 0.76 7.67 -2.39 -0.02 0.74 16 27 H 0.15 2.54 6.29 -2.91 -0.02 2.52 16 28 H 0.14 2.97 6.14 -2.91 -0.02 2.95 16 29 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.07 1.16 8.07 -2.39 -0.02 1.14 16 31 H 0.07 1.08 6.20 -2.39 -0.01 1.06 16 32 H 0.09 1.75 8.07 -2.39 -0.02 1.74 16 33 H 0.08 1.70 6.20 -2.39 -0.01 1.69 16 34 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.07 2.45 8.14 -2.40 -0.02 2.43 16 37 H 0.07 2.42 8.14 -2.40 -0.02 2.40 16 38 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 39 H 0.15 2.80 6.14 -2.91 -0.02 2.78 16 Total: -1.00 -68.91 352.54 4.67 -64.24 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: 1.05 Total: 12.63 kcal Atomic # 6 Polarization: -36.41 SS G_CDS: 5.70 Total: -30.71 kcal Atomic # 7 Polarization: -67.95 SS G_CDS: -1.89 Total: -69.84 kcal Atomic # 8 Polarization: -7.23 SS G_CDS: -0.93 Total: -8.17 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Atomic # 16 Polarization: -10.72 SS G_CDS: -1.21 Total: -11.93 kcal Atomic # 17 Polarization: -1.45 SS G_CDS: -0.08 Total: -1.52 kcal Total: -68.91 4.67 -64.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121924872.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.158 kcal (2) G-P(sol) polarization free energy of solvation -68.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds