Wall clock time and date at job start Tue Mar 31 2020 10:47:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53003 * 109.47314 * 2 1 4 4 H 1.08998 * 109.46683 * 55.00510 * 3 2 1 5 5 N 1.46494 * 109.47180 * 295.00054 * 3 2 1 6 6 C 1.34775 * 120.00099 * 155.74080 * 5 3 2 7 7 O 1.21284 * 119.99763 * 0.02562 * 6 5 3 8 8 C 1.50702 * 120.00077 * 179.72236 * 6 5 3 9 9 S 1.80998 * 109.46914 * 180.27360 * 8 6 5 10 10 C 1.76205 * 99.99679 * 180.02562 * 9 8 6 11 11 H 1.08001 * 120.00085 * 359.97438 * 10 9 8 12 12 C 1.38801 * 119.99706 * 180.02562 * 10 9 8 13 13 N 1.31628 * 120.00083 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 119.99722 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.46916 * 60.00270 * 14 12 10 16 16 H 1.48503 * 109.46988 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.47506 * 299.99791 * 14 12 10 18 18 C 1.50700 * 109.47139 * 174.99718 * 3 2 1 19 19 C 1.38209 * 119.99777 * 92.04975 * 18 3 2 20 20 C 1.38431 * 119.99802 * 179.97438 * 19 18 3 21 21 F 1.35105 * 119.99596 * 179.97438 * 20 19 18 22 22 C 1.38468 * 120.00228 * 0.02562 * 20 19 18 23 23 C 1.38158 * 119.99957 * 359.97438 * 22 20 19 24 24 C 1.38432 * 120.00223 * 271.77332 * 18 3 2 25 25 F 1.35096 * 119.99966 * 0.02562 * 24 18 3 26 26 H 1.09003 * 109.47339 * 59.99814 * 1 2 3 27 27 H 1.09001 * 109.47224 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47483 * 300.00028 * 1 2 3 29 29 H 1.08998 * 109.47483 * 239.99972 * 2 1 3 30 30 H 1.09003 * 109.47339 * 120.00186 * 2 1 3 31 31 H 0.97004 * 120.00008 * 335.74208 * 5 3 2 32 32 H 1.08993 * 109.47428 * 300.27655 * 8 6 5 33 33 H 1.09008 * 109.46687 * 60.27866 * 8 6 5 34 34 H 0.97009 * 119.99815 * 180.02562 * 13 12 10 35 35 H 1.08002 * 120.00055 * 359.97438 * 19 18 3 36 36 H 1.07995 * 119.99973 * 179.97438 * 22 20 19 37 37 H 1.07999 * 120.00152 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 7 1.6524 2.0975 -1.2517 6 6 1.5402 3.4396 -1.3034 7 8 1.7605 4.1050 -0.3137 8 6 1.1476 4.1138 -2.5928 9 16 1.0909 5.9057 -2.3436 10 6 0.6203 6.4246 -3.9604 11 1 0.4622 5.6920 -4.7381 12 6 0.4538 7.7749 -4.2348 13 7 0.6470 8.6678 -3.2872 14 14 -0.0443 8.3251 -5.9491 15 1 -1.3556 7.7233 -6.3005 16 1 -0.1553 9.8056 -5.9810 17 1 0.9812 7.8839 -6.9282 18 6 3.5419 1.4443 0.1239 19 6 4.3289 1.4531 -1.0122 20 6 5.7085 1.4552 -0.8984 21 9 6.4779 1.4633 -2.0089 22 6 6.3000 1.4480 0.3536 23 6 5.5132 1.4392 1.4893 24 6 4.1332 1.4428 1.3756 25 9 3.3638 1.4393 2.4861 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 1.4766 1.5652 -2.0434 32 1 1.8803 3.8773 -3.3643 33 1 0.1650 3.7589 -2.9038 34 1 0.5302 9.6116 -3.4789 35 1 3.8676 1.4583 -1.9887 36 1 7.3763 1.4493 0.4424 37 1 5.9745 1.4331 2.4658 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000130160213.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:20 Heat of formation + Delta-G solvation = -112.107709 kcal Electronic energy + Delta-G solvation = -23478.894973 eV Core-core repulsion = 19597.115623 eV Total energy + Delta-G solvation = -3881.779350 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.085 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.07600 -49.06486 -40.05511 -38.56838 -36.08531 -32.46207 -32.40895 -31.56302 -30.21717 -29.11737 -26.27422 -25.45357 -23.34366 -22.61443 -21.30074 -20.41521 -18.07384 -17.80201 -17.45811 -17.42387 -16.37949 -16.03397 -15.77720 -15.46351 -15.19867 -14.81078 -14.63157 -14.56857 -14.32109 -14.05347 -13.82063 -13.48948 -13.30168 -12.88686 -12.66531 -12.55941 -12.35746 -11.99500 -11.89943 -11.48580 -11.20547 -11.14680 -11.05282 -11.04163 -10.77507 -9.83883 -9.51451 -9.32610 -9.10542 -9.04611 -8.69788 -8.25464 -6.51173 -6.22185 -3.93111 0.73789 0.80914 2.93712 3.01640 3.14418 3.23155 3.26999 3.29927 3.64479 3.93751 4.00553 4.19735 4.25901 4.44939 4.60591 4.75217 4.81815 4.94879 5.02783 5.13007 5.17058 5.38408 5.47083 5.48068 5.63260 5.69286 5.70969 5.75657 5.79158 5.83965 5.85480 5.97098 6.05064 6.10492 6.52183 6.57171 7.58181 7.61160 8.34153 8.54363 9.23011 10.85160 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.015537 B = 0.003452 C = 0.003167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1801.660320 B = 8108.614760 C = 8838.503455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C 0.187 3.813 4 H 0.106 0.894 5 N -0.732 5.732 6 C 0.533 3.467 7 O -0.509 6.509 8 C -0.153 4.153 9 S -0.058 6.058 10 C -0.537 4.537 11 H 0.072 0.928 12 C 0.075 3.925 13 N -0.868 5.868 14 Si 0.918 3.082 15 H -0.274 1.274 16 H -0.283 1.283 17 H -0.274 1.274 18 C -0.095 4.095 19 C -0.111 4.111 20 C 0.091 3.909 21 F -0.135 7.135 22 C -0.129 4.129 23 C -0.124 4.124 24 C 0.100 3.900 25 F -0.131 7.131 26 H 0.060 0.940 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.400 0.600 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.269 0.731 35 H 0.144 0.856 36 H 0.144 0.856 37 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.823 -21.149 6.742 23.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.161 4.161 3 C 0.081 3.919 4 H 0.123 0.877 5 N -0.387 5.387 6 C 0.319 3.681 7 O -0.382 6.382 8 C -0.304 4.304 9 S 0.168 5.832 10 C -0.685 4.685 11 H 0.090 0.910 12 C -0.135 4.135 13 N -0.503 5.503 14 Si 0.745 3.255 15 H -0.199 1.199 16 H -0.208 1.208 17 H -0.199 1.199 18 C -0.097 4.097 19 C -0.130 4.130 20 C 0.072 3.928 21 F -0.114 7.114 22 C -0.148 4.148 23 C -0.143 4.143 24 C 0.080 3.920 25 F -0.110 7.110 26 H 0.079 0.921 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.090 0.910 30 H 0.097 0.903 31 H 0.234 0.766 32 H 0.108 0.892 33 H 0.109 0.891 34 H 0.079 0.921 35 H 0.161 0.839 36 H 0.162 0.838 37 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 7.170 -19.817 8.451 22.705 hybrid contribution -0.516 -0.548 -2.656 2.761 sum 6.653 -20.365 5.795 22.194 Atomic orbital electron populations 1.21770 0.94463 1.01866 1.02865 1.21781 0.97064 0.93986 1.03307 1.19747 0.88143 0.94395 0.89641 0.87652 1.46078 1.72566 1.07212 1.12855 1.20382 0.75994 0.81306 0.90422 1.90721 1.47406 1.63501 1.36602 1.23534 1.04195 1.05701 0.96974 1.85425 1.90391 0.90537 1.16822 1.22825 1.54298 0.94938 0.96450 0.90977 1.24983 0.94835 0.95497 0.98173 1.70008 1.45933 1.01777 1.32556 0.86232 0.79114 0.77600 0.82604 1.19929 1.20795 1.19926 1.20199 0.97512 1.00728 0.91290 1.20816 0.91340 1.01008 0.99830 1.17645 0.88746 1.03582 0.82858 1.91527 1.74976 1.93882 1.50972 1.20965 1.01228 1.02284 0.90285 1.20949 0.91396 1.01987 0.99977 1.17432 0.88742 1.03655 0.82199 1.91512 1.75111 1.93756 1.50584 0.92075 0.92316 0.92235 0.91015 0.90313 0.76565 0.89219 0.89123 0.92111 0.83873 0.83782 0.83646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.80 37.15 0.36 -0.87 16 2 C -0.12 -1.02 5.45 -26.73 -0.15 -1.16 16 3 C 0.19 2.18 1.98 -69.08 -0.14 2.04 16 4 H 0.11 1.49 7.15 -51.93 -0.37 1.12 16 5 N -0.73 -9.16 3.36 -54.93 -0.18 -9.35 16 6 C 0.53 9.59 7.80 -10.99 -0.09 9.50 16 7 O -0.51 -11.38 15.54 5.55 0.09 -11.29 16 8 C -0.15 -3.01 6.16 36.01 0.22 -2.79 16 9 S -0.06 -1.57 20.57 -107.50 -2.21 -3.78 16 10 C -0.54 -15.22 9.50 30.94 0.29 -14.92 16 11 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 12 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 13 N -0.87 -26.16 13.22 55.49 0.73 -25.42 16 14 Si 0.92 21.35 29.55 -169.99 -5.02 16.32 16 15 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 16 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 17 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 18 C -0.09 -1.14 4.99 -104.56 -0.52 -1.67 16 19 C -0.11 -1.31 9.30 -39.52 -0.37 -1.67 16 20 C 0.09 1.05 7.30 -39.43 -0.29 0.77 16 21 F -0.14 -1.66 17.27 2.25 0.04 -1.62 16 22 C -0.13 -1.25 10.02 -39.53 -0.40 -1.65 16 23 C -0.12 -1.22 10.02 -39.52 -0.40 -1.61 16 24 C 0.10 1.18 7.24 -39.42 -0.29 0.89 16 25 F -0.13 -1.63 16.51 2.25 0.04 -1.59 16 26 H 0.06 0.52 7.75 -51.93 -0.40 0.12 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.40 3.74 8.60 -40.82 -0.35 3.38 16 32 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 33 H 0.09 1.63 8.14 -51.91 -0.42 1.21 16 34 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 35 H 0.14 1.55 7.34 -52.49 -0.39 1.16 16 36 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 37 H 0.15 1.05 8.06 -52.49 -0.42 0.62 16 LS Contribution 344.31 15.07 5.19 5.19 Total: -1.00 -34.23 344.31 -7.61 -41.84 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: -4.44 Total: 0.83 kcal Atomic # 6 Polarization: -9.29 SS G_CDS: -1.84 Total: -11.13 kcal Atomic # 7 Polarization: -35.32 SS G_CDS: 0.55 Total: -34.77 kcal Atomic # 8 Polarization: -11.38 SS G_CDS: 0.09 Total: -11.29 kcal Atomic # 9 Polarization: -3.29 SS G_CDS: 0.08 Total: -3.21 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.21 Total: -3.78 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -34.23 -7.61 -41.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130160213.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.263 kcal (2) G-P(sol) polarization free energy of solvation -34.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds