Wall clock time and date at job start Tue Mar 31 2020 10:47:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53003 * 109.47314 * 2 1 4 4 H 1.08998 * 109.46683 * 55.00510 * 3 2 1 5 5 N 1.46494 * 109.47180 * 295.00054 * 3 2 1 6 6 C 1.34775 * 120.00099 * 155.74080 * 5 3 2 7 7 O 1.21284 * 119.99763 * 0.02562 * 6 5 3 8 8 C 1.50702 * 120.00077 * 179.72236 * 6 5 3 9 9 S 1.80998 * 109.46914 * 180.27360 * 8 6 5 10 10 C 1.76205 * 99.99679 * 180.02562 * 9 8 6 11 11 H 1.08001 * 120.00085 * 359.97438 * 10 9 8 12 12 C 1.38801 * 119.99706 * 180.02562 * 10 9 8 13 13 N 1.31628 * 120.00083 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 119.99722 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.46916 * 60.00270 * 14 12 10 16 16 H 1.48503 * 109.46988 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.47506 * 299.99791 * 14 12 10 18 18 C 1.50700 * 109.47139 * 174.99718 * 3 2 1 19 19 C 1.38209 * 119.99777 * 92.04975 * 18 3 2 20 20 C 1.38431 * 119.99802 * 179.97438 * 19 18 3 21 21 F 1.35105 * 119.99596 * 179.97438 * 20 19 18 22 22 C 1.38468 * 120.00228 * 0.02562 * 20 19 18 23 23 C 1.38158 * 119.99957 * 359.97438 * 22 20 19 24 24 C 1.38432 * 120.00223 * 271.77332 * 18 3 2 25 25 F 1.35096 * 119.99966 * 0.02562 * 24 18 3 26 26 H 1.09003 * 109.47339 * 59.99814 * 1 2 3 27 27 H 1.09001 * 109.47224 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47483 * 300.00028 * 1 2 3 29 29 H 1.08998 * 109.47483 * 239.99972 * 2 1 3 30 30 H 1.09003 * 109.47339 * 120.00186 * 2 1 3 31 31 H 0.97004 * 120.00008 * 335.74208 * 5 3 2 32 32 H 1.08993 * 109.47428 * 300.27655 * 8 6 5 33 33 H 1.09008 * 109.46687 * 60.27866 * 8 6 5 34 34 H 0.97009 * 119.99815 * 180.02562 * 13 12 10 35 35 H 1.08002 * 120.00055 * 359.97438 * 19 18 3 36 36 H 1.07995 * 119.99973 * 179.97438 * 22 20 19 37 37 H 1.07999 * 120.00152 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 7 1.6524 2.0975 -1.2517 6 6 1.5402 3.4396 -1.3034 7 8 1.7605 4.1050 -0.3137 8 6 1.1476 4.1138 -2.5928 9 16 1.0909 5.9057 -2.3436 10 6 0.6203 6.4246 -3.9604 11 1 0.4622 5.6920 -4.7381 12 6 0.4538 7.7749 -4.2348 13 7 0.6470 8.6678 -3.2872 14 14 -0.0443 8.3251 -5.9491 15 1 -1.3556 7.7233 -6.3005 16 1 -0.1553 9.8056 -5.9810 17 1 0.9812 7.8839 -6.9282 18 6 3.5419 1.4443 0.1239 19 6 4.3289 1.4531 -1.0122 20 6 5.7085 1.4552 -0.8984 21 9 6.4779 1.4633 -2.0089 22 6 6.3000 1.4480 0.3536 23 6 5.5132 1.4392 1.4893 24 6 4.1332 1.4428 1.3756 25 9 3.3638 1.4393 2.4861 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 1.4766 1.5652 -2.0434 32 1 1.8803 3.8773 -3.3643 33 1 0.1650 3.7589 -2.9038 34 1 0.5302 9.6116 -3.4789 35 1 3.8676 1.4583 -1.9887 36 1 7.3763 1.4493 0.4424 37 1 5.9745 1.4331 2.4658 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000130160213.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:19 Heat of formation + Delta-G solvation = -132.873484 kcal Electronic energy + Delta-G solvation = -23479.795445 eV Core-core repulsion = 19597.115623 eV Total energy + Delta-G solvation = -3882.679821 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.085 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.00109 -49.97702 -41.20343 -39.67482 -37.14258 -34.58442 -33.58417 -32.39376 -31.07338 -30.55431 -27.72152 -27.09061 -24.18933 -23.43421 -22.32468 -21.64907 -19.85734 -18.87741 -18.42197 -18.34105 -17.82611 -17.03421 -16.88650 -16.86103 -16.44455 -16.39356 -15.91521 -15.60390 -15.41596 -14.95931 -14.94393 -14.79185 -14.40629 -14.25330 -13.81376 -13.60975 -13.54085 -13.17029 -13.00795 -12.86438 -12.74852 -12.64767 -12.24088 -11.99860 -11.91329 -11.74109 -11.12769 -10.99243 -10.36086 -10.27746 -10.13212 -9.58540 -8.66650 -8.34415 -6.12553 -0.13973 -0.02371 1.26040 1.43912 1.46308 1.55749 1.57482 2.16091 2.27638 2.32278 2.99895 3.07569 3.14571 3.31339 3.40626 3.62097 3.80799 3.92248 4.00792 4.05748 4.17429 4.29828 4.38534 4.50019 4.54116 4.69676 4.81290 4.90475 4.93967 4.96470 5.00340 5.07049 5.10479 5.38956 5.41650 5.43862 5.72430 6.19621 6.45127 7.06925 7.20838 8.74532 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.015537 B = 0.003452 C = 0.003167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1801.660320 B = 8108.614760 C = 8838.503455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.113 4.113 3 C 0.187 3.813 4 H 0.077 0.923 5 N -0.704 5.704 6 C 0.537 3.463 7 O -0.559 6.559 8 C -0.129 4.129 9 S -0.151 6.151 10 C -0.547 4.547 11 H 0.083 0.917 12 C 0.015 3.985 13 N -0.912 5.912 14 Si 0.997 3.003 15 H -0.261 1.261 16 H -0.279 1.279 17 H -0.262 1.262 18 C -0.108 4.108 19 C -0.121 4.121 20 C 0.076 3.924 21 F -0.141 7.141 22 C -0.122 4.122 23 C -0.118 4.118 24 C 0.081 3.919 25 F -0.139 7.139 26 H 0.057 0.943 27 H 0.078 0.922 28 H 0.045 0.955 29 H 0.093 0.907 30 H 0.087 0.913 31 H 0.419 0.581 32 H 0.110 0.890 33 H 0.112 0.888 34 H 0.271 0.729 35 H 0.149 0.851 36 H 0.173 0.827 37 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.220 -23.257 5.376 24.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.151 4.151 3 C 0.082 3.918 4 H 0.095 0.905 5 N -0.359 5.359 6 C 0.323 3.677 7 O -0.437 6.437 8 C -0.281 4.281 9 S 0.076 5.924 10 C -0.695 4.695 11 H 0.101 0.899 12 C -0.190 4.190 13 N -0.548 5.548 14 Si 0.819 3.181 15 H -0.186 1.186 16 H -0.205 1.205 17 H -0.187 1.187 18 C -0.110 4.110 19 C -0.140 4.140 20 C 0.057 3.943 21 F -0.120 7.120 22 C -0.140 4.140 23 C -0.136 4.136 24 C 0.061 3.939 25 F -0.118 7.118 26 H 0.076 0.924 27 H 0.096 0.904 28 H 0.064 0.936 29 H 0.112 0.888 30 H 0.105 0.895 31 H 0.257 0.743 32 H 0.128 0.872 33 H 0.130 0.870 34 H 0.080 0.920 35 H 0.167 0.833 36 H 0.190 0.810 37 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 7.565 -21.997 7.067 24.311 hybrid contribution -0.587 -0.020 -2.154 2.233 sum 6.977 -22.017 4.913 23.613 Atomic orbital electron populations 1.21783 0.94274 1.02897 1.02020 1.21765 0.97051 0.91524 1.04781 1.19836 0.88338 0.95880 0.87753 0.90453 1.45759 1.70528 1.05362 1.14237 1.20101 0.75748 0.82779 0.89041 1.90711 1.50023 1.65013 1.37914 1.23371 1.06157 0.99969 0.98555 1.85613 1.90770 0.97844 1.18174 1.23178 1.54107 0.95667 0.96531 0.89851 1.26111 0.94519 0.95520 1.02868 1.70181 1.47286 1.02155 1.35205 0.85023 0.79277 0.77113 0.76713 1.18587 1.20462 1.18669 1.20216 0.97445 1.01609 0.91712 1.20905 0.91715 1.01444 0.99950 1.17881 0.88804 1.04227 0.83386 1.91510 1.75059 1.94018 1.51417 1.21295 1.02700 1.00654 0.89360 1.21274 0.90507 1.00482 1.01371 1.17738 0.89707 1.04517 0.81964 1.91491 1.75472 1.93916 1.50883 0.92429 0.90351 0.93606 0.88817 0.89486 0.74279 0.87179 0.86966 0.92019 0.83305 0.80985 0.80900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 9.80 71.98 0.71 -1.50 16 2 C -0.11 -1.65 5.45 30.59 0.17 -1.49 16 3 C 0.19 4.25 1.98 44.25 0.09 4.34 16 4 H 0.08 2.25 7.15 -2.39 -0.02 2.23 16 5 N -0.70 -16.80 3.36 -446.10 -1.50 -18.30 16 6 C 0.54 19.27 7.80 87.66 0.68 19.96 16 7 O -0.56 -25.79 15.54 -3.04 -0.05 -25.84 16 8 C -0.13 -5.00 6.16 71.24 0.44 -4.56 16 9 S -0.15 -8.36 20.57 -56.49 -1.16 -9.52 16 10 C -0.55 -31.10 9.50 67.95 0.65 -30.45 16 11 H 0.08 4.37 7.80 -2.91 -0.02 4.35 16 12 C 0.01 0.83 5.49 84.86 0.47 1.30 16 13 N -0.91 -56.16 13.22 21.65 0.29 -55.88 16 14 Si 1.00 43.45 29.55 68.60 2.03 45.48 16 15 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 16 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 17 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 18 C -0.11 -2.51 4.99 -19.83 -0.10 -2.61 16 19 C -0.12 -2.72 9.30 22.31 0.21 -2.51 16 20 C 0.08 1.66 7.30 22.37 0.16 1.82 16 21 F -0.14 -3.30 17.27 44.97 0.78 -2.53 16 22 C -0.12 -2.11 10.02 22.31 0.22 -1.88 16 23 C -0.12 -2.08 10.02 22.31 0.22 -1.86 16 24 C 0.08 1.84 7.24 22.37 0.16 2.01 16 25 F -0.14 -3.43 16.51 44.97 0.74 -2.69 16 26 H 0.06 0.87 7.75 -2.39 -0.02 0.85 16 27 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.42 6.81 8.60 -92.70 -0.80 6.02 16 32 H 0.11 3.81 8.14 -2.40 -0.02 3.79 16 33 H 0.11 3.85 8.14 -2.39 -0.02 3.83 16 34 H 0.27 15.53 8.31 -92.70 -0.77 14.76 16 35 H 0.15 3.00 7.34 -2.91 -0.02 2.98 16 36 H 0.17 1.95 8.06 -2.91 -0.02 1.92 16 37 H 0.17 2.02 8.06 -2.91 -0.02 2.00 16 Total: -1.00 -77.14 344.31 5.51 -71.63 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: 0.31 Total: 15.08 kcal Atomic # 6 Polarization: -21.52 SS G_CDS: 4.07 Total: -17.44 kcal Atomic # 7 Polarization: -72.97 SS G_CDS: -1.21 Total: -74.18 kcal Atomic # 8 Polarization: -25.79 SS G_CDS: -0.05 Total: -25.84 kcal Atomic # 9 Polarization: -6.73 SS G_CDS: 1.52 Total: -5.21 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Atomic # 16 Polarization: -8.36 SS G_CDS: -1.16 Total: -9.52 kcal Total: -77.14 5.51 -71.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130160213.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.240 kcal (2) G-P(sol) polarization free energy of solvation -77.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds