Wall clock time and date at job start Tue Mar 31 2020 10:47:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47262 * 2 1 4 4 H 1.09004 * 109.46812 * 304.99956 * 3 2 1 5 5 N 1.46498 * 109.47036 * 65.00021 * 3 2 1 6 6 C 1.34777 * 119.99828 * 274.72131 * 5 3 2 7 7 O 1.21283 * 120.00222 * 0.28168 * 6 5 3 8 8 C 1.50703 * 120.00290 * 180.27728 * 6 5 3 9 9 S 1.81000 * 109.47389 * 180.02562 * 8 6 5 10 10 C 1.76198 * 99.99715 * 179.97438 * 9 8 6 11 11 H 1.08001 * 120.00516 * 0.02562 * 10 9 8 12 12 C 1.38803 * 119.99710 * 179.97438 * 10 9 8 13 13 N 1.31626 * 120.00053 * 180.02562 * 12 10 9 14 14 Si 1.86798 * 120.00174 * 0.02562 * 12 10 9 15 15 H 1.48500 * 109.47356 * 89.99148 * 14 12 10 16 16 H 1.48497 * 109.47342 * 209.99750 * 14 12 10 17 17 H 1.48505 * 109.46847 * 329.99403 * 14 12 10 18 18 C 1.50701 * 109.47247 * 185.00035 * 3 2 1 19 19 C 1.38209 * 119.99987 * 264.72572 * 18 3 2 20 20 C 1.38426 * 120.00072 * 179.76743 * 19 18 3 21 21 F 1.35103 * 120.00119 * 180.26487 * 20 19 18 22 22 C 1.38477 * 119.99689 * 0.52757 * 20 19 18 23 23 C 1.38160 * 120.00032 * 359.72242 * 22 20 19 24 24 C 1.38428 * 120.00263 * 84.99297 * 18 3 2 25 25 F 1.35104 * 119.99770 * 359.97438 * 24 18 3 26 26 H 1.09000 * 109.46616 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47004 * 300.00349 * 1 2 3 28 28 H 1.08997 * 109.46461 * 60.00164 * 1 2 3 29 29 H 1.09000 * 109.47004 * 239.99651 * 2 1 3 30 30 H 1.09005 * 109.47038 * 120.00011 * 2 1 3 31 31 H 0.97001 * 120.00384 * 95.00578 * 5 3 2 32 32 H 1.08998 * 109.46954 * 300.00581 * 8 6 5 33 33 H 1.09002 * 109.46946 * 59.99717 * 8 6 5 34 34 H 0.97000 * 120.00636 * 180.02562 * 13 12 10 35 35 H 1.08005 * 119.99587 * 0.02562 * 19 18 3 36 36 H 1.08001 * 119.99605 * 179.69960 * 22 20 19 37 37 H 1.08004 * 119.99724 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 7 1.6525 2.0974 1.2518 6 6 0.4374 2.6692 1.3650 7 8 -0.3373 2.6371 0.4323 8 6 0.0409 3.3485 2.6505 9 16 -1.6355 4.0117 2.4905 10 6 -1.8350 4.7278 4.0880 11 1 -1.0350 4.6667 4.8110 12 6 -3.0199 5.3715 4.4170 13 7 -3.1688 5.9069 5.6101 14 14 -4.4034 5.4779 3.1664 15 1 -5.2937 4.2983 3.3114 16 1 -5.1849 6.7193 3.3971 17 1 -3.8313 5.5007 1.7961 18 6 3.5420 1.4443 -0.1238 19 6 4.3288 1.5204 1.0099 20 6 5.7084 1.5172 0.8965 21 9 6.4775 1.5863 2.0051 22 6 6.3001 1.4487 -0.3536 23 6 5.5136 1.3778 -1.4873 24 6 4.1336 1.3752 -1.3734 25 9 3.3645 1.3057 -2.4820 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3632 0.5138 -0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 2.2720 2.1232 1.9978 32 1 0.0694 2.6265 3.4667 33 1 0.7354 4.1619 2.8608 34 1 -3.9970 6.3565 5.8402 35 1 3.8672 1.5782 1.9846 36 1 7.3765 1.4511 -0.4424 37 1 5.9751 1.3248 -2.4623 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000130160422.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:22 Heat of formation + Delta-G solvation = -105.696269 kcal Electronic energy + Delta-G solvation = -23351.280951 eV Core-core repulsion = 19469.779622 eV Total energy + Delta-G solvation = -3881.501329 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.085 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.32652 -49.30314 -40.30292 -38.91800 -35.91378 -32.60454 -32.44992 -31.67683 -30.44866 -29.22880 -26.37752 -25.60956 -23.55934 -22.77560 -21.37031 -20.40651 -18.46975 -17.81322 -17.67043 -17.47145 -16.33458 -16.28814 -16.04590 -15.72808 -15.51958 -14.98946 -14.93373 -14.78282 -14.21098 -13.97492 -13.69682 -13.64037 -13.43873 -13.03392 -12.84855 -12.80803 -12.29710 -11.98722 -11.92735 -11.54631 -11.28892 -11.21012 -11.02415 -10.89534 -10.61162 -9.87783 -9.68821 -9.53515 -9.13626 -9.01616 -8.90078 -8.52597 -6.93715 -6.30359 -4.02353 0.45770 0.51162 2.68181 2.84842 2.91372 3.22916 3.32179 3.49149 3.58956 3.64402 3.73637 3.98537 4.15892 4.31602 4.45921 4.62570 4.68916 4.88923 4.93839 5.08589 5.08926 5.24431 5.34518 5.35403 5.46830 5.53692 5.56079 5.69757 5.71738 5.78941 5.96369 5.97852 6.13205 6.28390 6.43369 6.52627 7.48062 7.92617 8.40091 8.41087 9.15718 10.78918 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.020313 B = 0.003131 C = 0.002862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.083026 B = 8941.896361 C = 9780.377603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.125 4.125 3 C 0.187 3.813 4 H 0.107 0.893 5 N -0.733 5.733 6 C 0.533 3.467 7 O -0.508 6.508 8 C -0.126 4.126 9 S -0.138 6.138 10 C -0.522 4.522 11 H 0.088 0.912 12 C 0.096 3.904 13 N -0.880 5.880 14 Si 0.857 3.143 15 H -0.267 1.267 16 H -0.274 1.274 17 H -0.235 1.235 18 C -0.091 4.091 19 C -0.123 4.123 20 C 0.097 3.903 21 F -0.133 7.133 22 C -0.128 4.128 23 C -0.119 4.119 24 C 0.100 3.900 25 F -0.128 7.128 26 H 0.048 0.952 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.397 0.603 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.271 0.729 35 H 0.146 0.854 36 H 0.147 0.853 37 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.948 -12.204 -12.647 26.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.164 4.164 3 C 0.082 3.918 4 H 0.125 0.875 5 N -0.390 5.390 6 C 0.319 3.681 7 O -0.382 6.382 8 C -0.276 4.276 9 S 0.088 5.912 10 C -0.670 4.670 11 H 0.106 0.894 12 C -0.113 4.113 13 N -0.517 5.517 14 Si 0.681 3.319 15 H -0.192 1.192 16 H -0.199 1.199 17 H -0.159 1.159 18 C -0.092 4.092 19 C -0.142 4.142 20 C 0.078 3.922 21 F -0.111 7.111 22 C -0.147 4.147 23 C -0.138 4.138 24 C 0.080 3.920 25 F -0.106 7.106 26 H 0.067 0.933 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.234 0.766 32 H 0.115 0.885 33 H 0.116 0.884 34 H 0.081 0.919 35 H 0.163 0.837 36 H 0.165 0.835 37 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 18.514 -12.144 -14.067 26.233 hybrid contribution 0.637 0.248 1.272 1.444 sum 19.151 -11.896 -12.795 25.923 Atomic orbital electron populations 1.21821 0.93736 1.00945 1.03900 1.21930 0.97863 0.94301 1.02315 1.19765 0.87655 0.94963 0.89418 0.87519 1.46138 1.17645 1.59361 1.15815 1.20244 0.80772 0.77416 0.89623 1.90720 1.50273 1.57267 1.39949 1.23294 1.04047 1.03009 0.97262 1.84780 1.12062 1.71791 1.22569 1.22319 1.05747 1.41488 0.97448 0.89393 1.24712 0.97807 0.93540 0.95225 1.69934 1.26954 1.35324 1.19466 0.86738 0.82794 0.78590 0.83746 1.19198 1.19937 1.15899 1.19896 0.96590 1.01147 0.91602 1.20788 0.91602 1.02216 0.99625 1.17601 0.88567 1.03051 0.83012 1.91547 1.74926 1.93621 1.51010 1.21019 1.01425 1.01989 0.90238 1.21000 0.91268 1.01384 1.00178 1.17411 0.88792 1.03646 0.82187 1.91549 1.75045 1.93490 1.50552 0.93303 0.91688 0.91857 0.91182 0.91551 0.76612 0.88465 0.88438 0.91917 0.83673 0.83542 0.83373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 8.52 37.16 0.32 -1.60 16 2 C -0.13 -1.34 5.59 -26.73 -0.15 -1.49 16 3 C 0.19 2.12 2.24 -69.08 -0.15 1.96 16 4 H 0.11 1.43 7.22 -51.93 -0.37 1.06 16 5 N -0.73 -8.92 4.94 -54.93 -0.27 -9.19 16 6 C 0.53 8.90 6.43 -10.98 -0.07 8.83 16 7 O -0.51 -10.12 13.01 5.55 0.07 -10.04 16 8 C -0.13 -2.34 6.16 36.01 0.22 -2.12 16 9 S -0.14 -3.43 18.55 -107.50 -1.99 -5.42 16 10 C -0.52 -14.89 10.04 30.94 0.31 -14.58 16 11 H 0.09 2.62 8.03 -52.49 -0.42 2.19 16 12 C 0.10 2.79 5.50 -17.43 -0.10 2.69 16 13 N -0.88 -26.46 13.97 55.49 0.78 -25.68 16 14 Si 0.86 21.63 27.74 -169.99 -4.72 16.92 16 15 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 16 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 17 H -0.24 -5.91 6.74 56.52 0.38 -5.53 16 18 C -0.09 -0.85 5.06 -104.56 -0.53 -1.38 16 19 C -0.12 -1.03 9.22 -39.52 -0.36 -1.39 16 20 C 0.10 0.79 7.30 -39.42 -0.29 0.50 16 21 F -0.13 -1.20 17.27 2.25 0.04 -1.16 16 22 C -0.13 -0.83 10.02 -39.52 -0.40 -1.23 16 23 C -0.12 -0.80 10.02 -39.53 -0.40 -1.20 16 24 C 0.10 0.89 7.24 -39.43 -0.29 0.61 16 25 F -0.13 -1.31 16.57 2.25 0.04 -1.27 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 1.01 5.66 -51.93 -0.29 0.71 16 28 H 0.06 0.90 7.85 -51.93 -0.41 0.50 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.40 3.78 6.20 -40.82 -0.25 3.53 16 32 H 0.10 1.68 8.14 -51.92 -0.42 1.26 16 33 H 0.10 1.70 8.14 -51.92 -0.42 1.28 16 34 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 35 H 0.15 1.02 6.06 -52.48 -0.32 0.70 16 36 H 0.15 0.61 8.06 -52.49 -0.42 0.19 16 37 H 0.15 0.65 8.06 -52.48 -0.42 0.23 16 LS Contribution 332.50 15.07 5.01 5.01 Total: -1.00 -32.71 332.50 -7.11 -39.83 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: -4.18 Total: 1.41 kcal Atomic # 6 Polarization: -8.51 SS G_CDS: -1.88 Total: -10.39 kcal Atomic # 7 Polarization: -35.38 SS G_CDS: 0.50 Total: -34.87 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: 0.07 Total: -10.04 kcal Atomic # 9 Polarization: -2.50 SS G_CDS: 0.08 Total: -2.43 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.72 Total: 16.92 kcal Atomic # 16 Polarization: -3.43 SS G_CDS: -1.99 Total: -5.42 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.71 -7.11 -39.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130160422.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.871 kcal (2) G-P(sol) polarization free energy of solvation -32.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds