Wall clock time and date at job start Tue Mar 31 2020 10:47:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47262 * 2 1 4 4 H 1.09004 * 109.46812 * 304.99956 * 3 2 1 5 5 N 1.46498 * 109.47036 * 65.00021 * 3 2 1 6 6 C 1.34777 * 119.99828 * 274.72131 * 5 3 2 7 7 O 1.21283 * 120.00222 * 0.28168 * 6 5 3 8 8 C 1.50703 * 120.00290 * 180.27728 * 6 5 3 9 9 S 1.81000 * 109.47389 * 180.02562 * 8 6 5 10 10 C 1.76198 * 99.99715 * 179.97438 * 9 8 6 11 11 H 1.08001 * 120.00516 * 0.02562 * 10 9 8 12 12 C 1.38803 * 119.99710 * 179.97438 * 10 9 8 13 13 N 1.31626 * 120.00053 * 180.02562 * 12 10 9 14 14 Si 1.86798 * 120.00174 * 0.02562 * 12 10 9 15 15 H 1.48500 * 109.47356 * 89.99148 * 14 12 10 16 16 H 1.48497 * 109.47342 * 209.99750 * 14 12 10 17 17 H 1.48505 * 109.46847 * 329.99403 * 14 12 10 18 18 C 1.50701 * 109.47247 * 185.00035 * 3 2 1 19 19 C 1.38209 * 119.99987 * 264.72572 * 18 3 2 20 20 C 1.38426 * 120.00072 * 179.76743 * 19 18 3 21 21 F 1.35103 * 120.00119 * 180.26487 * 20 19 18 22 22 C 1.38477 * 119.99689 * 0.52757 * 20 19 18 23 23 C 1.38160 * 120.00032 * 359.72242 * 22 20 19 24 24 C 1.38428 * 120.00263 * 84.99297 * 18 3 2 25 25 F 1.35104 * 119.99770 * 359.97438 * 24 18 3 26 26 H 1.09000 * 109.46616 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47004 * 300.00349 * 1 2 3 28 28 H 1.08997 * 109.46461 * 60.00164 * 1 2 3 29 29 H 1.09000 * 109.47004 * 239.99651 * 2 1 3 30 30 H 1.09005 * 109.47038 * 120.00011 * 2 1 3 31 31 H 0.97001 * 120.00384 * 95.00578 * 5 3 2 32 32 H 1.08998 * 109.46954 * 300.00581 * 8 6 5 33 33 H 1.09002 * 109.46946 * 59.99717 * 8 6 5 34 34 H 0.97000 * 120.00636 * 180.02562 * 13 12 10 35 35 H 1.08005 * 119.99587 * 0.02562 * 19 18 3 36 36 H 1.08001 * 119.99605 * 179.69960 * 22 20 19 37 37 H 1.08004 * 119.99724 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 7 1.6525 2.0974 1.2518 6 6 0.4374 2.6692 1.3650 7 8 -0.3373 2.6371 0.4323 8 6 0.0409 3.3485 2.6505 9 16 -1.6355 4.0117 2.4905 10 6 -1.8350 4.7278 4.0880 11 1 -1.0350 4.6667 4.8110 12 6 -3.0199 5.3715 4.4170 13 7 -3.1688 5.9069 5.6101 14 14 -4.4034 5.4779 3.1664 15 1 -5.2937 4.2983 3.3114 16 1 -5.1849 6.7193 3.3971 17 1 -3.8313 5.5007 1.7961 18 6 3.5420 1.4443 -0.1238 19 6 4.3288 1.5204 1.0099 20 6 5.7084 1.5172 0.8965 21 9 6.4775 1.5863 2.0051 22 6 6.3001 1.4487 -0.3536 23 6 5.5136 1.3778 -1.4873 24 6 4.1336 1.3752 -1.3734 25 9 3.3645 1.3057 -2.4820 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3632 0.5138 -0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 2.2720 2.1232 1.9978 32 1 0.0694 2.6265 3.4667 33 1 0.7354 4.1619 2.8608 34 1 -3.9970 6.3565 5.8402 35 1 3.8672 1.5782 1.9846 36 1 7.3765 1.4511 -0.4424 37 1 5.9751 1.3248 -2.4623 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000130160422.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:22 Heat of formation + Delta-G solvation = -125.769114 kcal Electronic energy + Delta-G solvation = -23352.151375 eV Core-core repulsion = 19469.779622 eV Total energy + Delta-G solvation = -3882.371753 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.085 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.01295 -49.96598 -41.34193 -39.82029 -36.93695 -34.67647 -33.75018 -32.41295 -31.09056 -30.60767 -27.88611 -27.22919 -24.23621 -23.54906 -22.36511 -21.52264 -20.00762 -18.89816 -18.45074 -18.35321 -17.53893 -17.18755 -17.06790 -16.95361 -16.74479 -16.39042 -15.87584 -15.55652 -15.40050 -15.11117 -14.90574 -14.89341 -14.64413 -14.28269 -13.81363 -13.65312 -13.51837 -13.34392 -13.02914 -12.91181 -12.74163 -12.68194 -12.46850 -11.95975 -11.89303 -11.84477 -11.17305 -10.98151 -10.53703 -10.36450 -10.11589 -9.59816 -8.99031 -8.51875 -6.22242 -0.17335 -0.06742 0.97838 1.31197 1.46065 1.54406 1.55000 2.11342 2.24610 2.28253 2.70450 2.86575 2.98198 3.10504 3.32019 3.55421 3.77314 3.89589 3.99511 4.00802 4.14747 4.22919 4.37738 4.46267 4.50899 4.62515 4.82981 4.87826 4.89687 4.93091 5.00022 5.01543 5.10088 5.38820 5.45638 5.68878 5.70414 6.11350 6.36822 6.93418 7.14510 8.60658 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.020313 B = 0.003131 C = 0.002862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.083026 B = 8941.896361 C = 9780.377603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.119 4.119 3 C 0.190 3.810 4 H 0.083 0.917 5 N -0.711 5.711 6 C 0.539 3.461 7 O -0.544 6.544 8 C -0.114 4.114 9 S -0.169 6.169 10 C -0.530 4.530 11 H 0.062 0.938 12 C 0.046 3.954 13 N -0.918 5.918 14 Si 0.914 3.086 15 H -0.262 1.262 16 H -0.260 1.260 17 H -0.236 1.236 18 C -0.100 4.100 19 C -0.126 4.126 20 C 0.087 3.913 21 F -0.139 7.139 22 C -0.116 4.116 23 C -0.110 4.110 24 C 0.086 3.914 25 F -0.139 7.139 26 H 0.062 0.938 27 H 0.038 0.962 28 H 0.043 0.957 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.413 0.587 32 H 0.113 0.887 33 H 0.112 0.888 34 H 0.277 0.723 35 H 0.155 0.845 36 H 0.175 0.825 37 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.980 -13.244 -13.816 29.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.157 4.157 3 C 0.085 3.915 4 H 0.101 0.899 5 N -0.367 5.367 6 C 0.325 3.675 7 O -0.421 6.421 8 C -0.264 4.264 9 S 0.057 5.943 10 C -0.677 4.677 11 H 0.080 0.920 12 C -0.160 4.160 13 N -0.556 5.556 14 Si 0.736 3.264 15 H -0.187 1.187 16 H -0.184 1.184 17 H -0.160 1.160 18 C -0.102 4.102 19 C -0.145 4.145 20 C 0.068 3.932 21 F -0.117 7.117 22 C -0.134 4.134 23 C -0.129 4.129 24 C 0.066 3.934 25 F -0.118 7.118 26 H 0.081 0.919 27 H 0.058 0.942 28 H 0.062 0.938 29 H 0.103 0.897 30 H 0.100 0.900 31 H 0.252 0.748 32 H 0.132 0.868 33 H 0.130 0.870 34 H 0.086 0.914 35 H 0.172 0.828 36 H 0.192 0.808 37 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 20.594 -13.197 -15.221 28.809 hybrid contribution 0.205 0.502 1.641 1.728 sum 20.799 -12.695 -13.580 27.896 Atomic orbital electron populations 1.21756 0.95599 1.01116 1.01637 1.21892 0.95984 0.94096 1.03772 1.19713 0.89236 0.94832 0.87672 0.89873 1.45885 1.16185 1.57760 1.16888 1.19845 0.81805 0.77548 0.88303 1.90717 1.51672 1.58914 1.40767 1.23281 1.00081 1.03881 0.99196 1.84683 1.17302 1.72118 1.20152 1.22482 1.05099 1.41443 0.98719 0.92002 1.25561 1.00162 0.93306 0.96940 1.70014 1.28035 1.36384 1.21160 0.85872 0.80013 0.79206 0.81316 1.18676 1.18429 1.15987 1.19652 0.95085 1.03101 0.92372 1.20845 0.91931 1.02059 0.99626 1.17764 0.88466 1.03513 0.83457 1.91537 1.74994 1.93735 1.51476 1.21345 1.02841 0.99938 0.89284 1.21280 0.90152 0.99907 1.01550 1.17674 0.89732 1.04366 0.81642 1.91524 1.75527 1.93677 1.51056 0.91888 0.94246 0.93769 0.89724 0.89981 0.74796 0.86835 0.86975 0.91372 0.82796 0.80805 0.80740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.71 8.52 71.98 0.61 -3.10 16 2 C -0.12 -2.37 5.59 30.60 0.17 -2.20 16 3 C 0.19 4.11 2.24 44.24 0.10 4.21 16 4 H 0.08 2.24 7.22 -2.39 -0.02 2.22 16 5 N -0.71 -16.41 4.94 -446.09 -2.20 -18.62 16 6 C 0.54 17.72 6.43 87.66 0.56 18.28 16 7 O -0.54 -21.83 13.01 -3.04 -0.04 -21.87 16 8 C -0.11 -4.16 6.16 71.24 0.44 -3.72 16 9 S -0.17 -8.40 18.55 -56.49 -1.05 -9.45 16 10 C -0.53 -30.66 10.04 67.96 0.68 -29.98 16 11 H 0.06 3.78 8.03 -2.91 -0.02 3.75 16 12 C 0.05 2.67 5.50 84.86 0.47 3.14 16 13 N -0.92 -55.90 13.97 21.65 0.30 -55.60 16 14 Si 0.91 44.89 27.74 68.60 1.90 46.79 16 15 H -0.26 -12.55 7.11 99.48 0.71 -11.85 16 16 H -0.26 -12.00 7.11 99.48 0.71 -11.30 16 17 H -0.24 -11.54 6.74 99.48 0.67 -10.87 16 18 C -0.10 -1.70 5.06 -19.83 -0.10 -1.80 16 19 C -0.13 -1.81 9.22 22.31 0.21 -1.60 16 20 C 0.09 1.18 7.30 22.37 0.16 1.35 16 21 F -0.14 -2.18 17.27 44.97 0.78 -1.40 16 22 C -0.12 -1.10 10.02 22.31 0.22 -0.87 16 23 C -0.11 -1.13 10.02 22.31 0.22 -0.91 16 24 C 0.09 1.37 7.24 22.37 0.16 1.53 16 25 F -0.14 -2.68 16.57 44.97 0.74 -1.94 16 26 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.04 1.21 5.66 -2.39 -0.01 1.20 16 28 H 0.04 1.28 7.85 -2.39 -0.02 1.27 16 29 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 31 H 0.41 7.02 6.20 -92.71 -0.57 6.45 16 32 H 0.11 3.80 8.14 -2.40 -0.02 3.78 16 33 H 0.11 3.80 8.14 -2.39 -0.02 3.78 16 34 H 0.28 15.59 8.31 -92.71 -0.77 14.82 16 35 H 0.15 1.80 6.06 -2.91 -0.02 1.79 16 36 H 0.17 0.69 8.06 -2.91 -0.02 0.67 16 37 H 0.18 0.84 8.06 -2.91 -0.02 0.82 16 Total: -1.00 -71.89 332.50 4.85 -67.04 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: 0.50 Total: 10.73 kcal Atomic # 6 Polarization: -19.59 SS G_CDS: 3.91 Total: -15.68 kcal Atomic # 7 Polarization: -72.32 SS G_CDS: -1.90 Total: -74.22 kcal Atomic # 8 Polarization: -21.83 SS G_CDS: -0.04 Total: -21.87 kcal Atomic # 9 Polarization: -4.86 SS G_CDS: 1.52 Total: -3.34 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 1.90 Total: 46.79 kcal Atomic # 16 Polarization: -8.40 SS G_CDS: -1.05 Total: -9.45 kcal Total: -71.89 4.85 -67.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130160422.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.725 kcal (2) G-P(sol) polarization free energy of solvation -71.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds