Wall clock time and date at job start Tue Mar 31 2020 10:34:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 C 1.31906 * 124.30458 * 90.00207 * 3 2 1 5 5 C 1.45060 * 114.81038 * 179.97438 * 4 3 2 6 6 C 1.39762 * 111.99958 * 0.02562 * 5 4 3 7 7 N 1.33901 * 119.10898 * 179.97438 * 6 5 4 8 8 C 1.31305 * 121.04469 * 0.04052 * 7 6 5 9 9 N 1.32057 * 122.18815 * 359.95509 * 8 7 6 10 10 C 1.32524 * 121.18797 * 0.02562 * 9 8 7 11 11 N 1.38303 * 120.53413 * 180.02562 * 10 9 8 12 12 C 1.40538 * 119.99832 * 359.97438 * 11 10 9 13 13 C 1.40671 * 126.08458 * 0.02562 * 12 11 10 14 14 N 1.30909 * 108.39131 * 179.97438 * 13 12 11 15 15 N 1.40067 * 108.40913 * 359.97438 * 14 13 12 16 16 C 1.37313 * 126.06696 * 179.97438 * 15 14 13 17 17 H 1.08003 * 119.99681 * 179.97438 * 16 15 14 18 18 C 1.38977 * 120.00181 * 359.97438 * 16 15 14 19 19 N 1.31310 * 119.99495 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 120.00061 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47169 * 59.99881 * 20 18 16 22 22 H 1.48501 * 109.47095 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47152 * 300.00169 * 20 18 16 24 24 C 1.35682 * 126.08117 * 179.71156 * 12 11 10 25 25 S 1.75351 * 124.30434 * 269.70091 * 3 2 1 26 26 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 27 27 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 29 29 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 30 30 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 31 31 H 1.07994 * 122.59523 * 359.97438 * 4 3 2 32 32 H 1.08002 * 118.90122 * 179.97438 * 8 7 6 33 33 H 0.96996 * 120.00340 * 179.97438 * 11 10 9 34 34 H 1.07999 * 125.80489 * 359.97438 * 13 12 11 35 35 H 0.97002 * 119.99120 * 179.97438 * 19 18 16 36 36 H 1.08001 * 126.24896 * 359.97438 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2801 2.1218 1.0896 5 6 2.7575 3.4705 0.8503 6 6 2.8582 3.7559 -0.5141 7 7 3.2859 4.9657 -0.8967 8 6 3.6102 5.8803 -0.0122 9 7 3.5326 5.6605 1.2877 10 6 3.1200 4.4943 1.7631 11 7 3.0435 4.2790 3.1272 12 6 3.4053 5.3012 4.0212 13 6 3.8597 6.5856 3.6712 14 7 4.0959 7.2543 4.7716 15 7 3.8024 6.4273 5.8633 16 6 3.9220 6.7654 7.1888 17 1 3.6668 6.0476 7.9543 18 6 4.3713 8.0314 7.5452 19 7 4.6819 8.9039 6.6144 20 14 4.5345 8.4911 9.3483 21 1 5.4945 7.5705 10.0089 22 1 5.0292 9.8868 9.4605 23 1 3.2092 8.3815 10.0091 24 6 3.3728 5.2267 5.3756 25 16 2.3688 2.3501 -1.4485 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 2.1385 1.7224 2.0830 32 1 3.9514 6.8444 -0.3593 33 1 2.7401 3.4226 3.4668 34 1 3.9914 6.9570 2.6657 35 1 4.9952 9.7876 6.8633 36 1 3.0644 4.3731 5.9610 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000142790405.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:34:41 Heat of formation + Delta-G solvation = 151.448664 kcal Electronic energy + Delta-G solvation = -22366.507459 eV Core-core repulsion = 18979.138709 eV Total energy + Delta-G solvation = -3387.368750 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 315.085 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.75257 -39.48665 -36.82493 -35.93572 -33.48355 -33.38960 -31.76888 -30.31932 -28.94822 -27.44205 -25.33987 -24.75089 -23.61858 -22.60798 -20.80212 -20.52965 -19.81048 -18.46084 -17.60124 -16.56941 -16.40101 -15.69574 -15.52418 -15.06545 -14.82231 -14.48410 -14.25893 -13.98419 -13.68881 -13.55891 -13.32128 -12.93925 -12.68125 -12.12662 -11.77312 -11.74691 -11.50582 -11.49611 -11.39367 -11.22148 -11.03195 -10.82868 -10.60144 -10.42399 -9.86794 -9.28179 -8.90847 -8.66793 -8.64392 -8.13229 -7.97280 -6.62424 -6.60263 -4.27951 0.69574 1.24120 1.42958 1.89409 2.24569 2.93263 3.00590 3.05019 3.34153 3.50215 3.80351 4.06373 4.33574 4.39912 4.49312 4.62938 4.81174 4.89532 4.95520 4.95863 5.04508 5.14435 5.38745 5.54173 5.57647 5.66551 5.87880 5.94056 6.17647 6.21764 6.26201 6.47560 6.76207 6.88746 7.07205 7.14318 7.60378 7.81596 7.92545 8.21861 8.56893 8.66800 9.29461 9.59491 10.33224 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.026616 B = 0.002885 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.729303 B = 9704.656050 C =10662.698237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.049 4.049 3 C -0.189 4.189 4 C -0.084 4.084 5 C -0.244 4.244 6 C 0.127 3.873 7 N -0.556 5.556 8 C 0.359 3.641 9 N -0.570 5.570 10 C 0.482 3.518 11 N -0.579 5.579 12 C -0.066 4.066 13 C -0.024 4.024 14 N -0.262 5.262 15 N -0.140 5.140 16 C -0.322 4.322 17 H 0.116 0.884 18 C 0.047 3.953 19 N -0.767 5.767 20 Si 0.935 3.065 21 H -0.266 1.266 22 H -0.276 1.276 23 H -0.267 1.267 24 C -0.084 4.084 25 S 0.138 5.862 26 H 0.057 0.943 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.140 0.860 32 H 0.199 0.801 33 H 0.410 0.590 34 H 0.189 0.811 35 H 0.276 0.724 36 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.435 -14.122 -9.958 18.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.088 4.088 3 C -0.305 4.305 4 C -0.114 4.114 5 C -0.263 4.263 6 C -0.123 4.123 7 N -0.280 5.280 8 C 0.066 3.934 9 N -0.298 5.298 10 C 0.229 3.771 11 N -0.196 5.196 12 C -0.172 4.172 13 C -0.200 4.200 14 N -0.092 5.092 15 N 0.094 4.906 16 C -0.455 4.455 17 H 0.134 0.866 18 C -0.171 4.171 19 N -0.394 5.394 20 Si 0.759 3.241 21 H -0.191 1.191 22 H -0.201 1.201 23 H -0.191 1.191 24 C -0.236 4.236 25 S 0.396 5.604 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.100 0.900 30 H 0.093 0.907 31 H 0.158 0.842 32 H 0.215 0.785 33 H 0.246 0.754 34 H 0.206 0.794 35 H 0.087 0.913 36 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -4.711 -12.111 -11.151 17.123 hybrid contribution -0.480 -1.338 2.447 2.830 sum -5.191 -13.449 -8.704 16.840 Atomic orbital electron populations 1.21804 0.94351 1.01879 1.02666 1.20083 0.96147 0.89353 1.03264 1.23771 1.09813 1.01073 0.95877 1.20391 1.00348 0.91467 0.99204 1.19877 1.15445 0.96684 0.94289 1.23438 0.98166 0.97508 0.93160 1.68012 1.20674 1.00349 1.38938 1.24716 0.88233 0.97138 0.83309 1.68050 1.24810 1.20462 1.16460 1.18232 0.86893 0.87634 0.84379 1.41150 1.62854 1.14984 1.00623 1.17305 1.20602 0.91617 0.87717 1.24473 1.04765 0.91455 0.99333 1.78288 1.24572 1.15788 0.90554 1.44580 1.34495 1.05958 1.05614 1.19849 1.46664 1.00291 0.78652 0.86644 1.25646 0.95420 0.95424 1.00612 1.70208 1.31048 1.04953 1.33150 0.85884 0.79374 0.78391 0.80464 1.19125 1.20057 1.19132 1.21208 1.16680 0.93362 0.92303 1.83949 1.68576 1.01327 1.06585 0.92347 0.92105 0.92232 0.89963 0.90725 0.84237 0.78462 0.75385 0.79417 0.91315 0.83755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.89 37.16 0.37 -0.69 16 2 C -0.05 -0.38 6.37 -27.88 -0.18 -0.56 16 3 C -0.19 -2.05 5.64 -36.21 -0.20 -2.26 16 4 C -0.08 -1.02 9.85 -38.79 -0.38 -1.41 16 5 C -0.24 -3.81 6.08 -105.23 -0.64 -4.45 16 6 C 0.13 2.00 7.69 -16.08 -0.12 1.88 16 7 N -0.56 -9.15 10.47 -13.32 -0.14 -9.29 16 8 C 0.36 5.76 12.26 -92.35 -1.13 4.63 16 9 N -0.57 -10.57 6.59 -13.43 -0.09 -10.66 16 10 C 0.48 8.59 7.54 -154.53 -1.17 7.42 16 11 N -0.58 -10.30 5.59 -9.58 -0.05 -10.35 16 12 C -0.07 -1.47 6.92 -83.86 -0.58 -2.05 16 13 C -0.02 -0.59 10.85 -17.03 -0.18 -0.77 16 14 N -0.26 -7.34 10.39 30.81 0.32 -7.02 16 15 N -0.14 -3.75 3.74 -11.41 -0.04 -3.79 16 16 C -0.32 -8.34 10.25 -14.82 -0.15 -8.49 16 17 H 0.12 2.66 7.83 -52.48 -0.41 2.25 16 18 C 0.05 1.18 5.50 -17.50 -0.10 1.08 16 19 N -0.77 -20.92 11.81 55.49 0.66 -20.26 16 20 Si 0.94 18.52 29.55 -169.99 -5.02 13.49 16 21 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 22 H -0.28 -5.41 7.11 56.52 0.40 -5.01 16 23 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 24 C -0.08 -1.92 11.50 -16.38 -0.19 -2.11 16 25 S 0.14 1.68 23.20 -107.50 -2.49 -0.82 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.14 1.38 7.69 -52.49 -0.40 0.97 16 32 H 0.20 2.44 8.06 -52.49 -0.42 2.02 16 33 H 0.41 5.85 8.17 -40.82 -0.33 5.52 16 34 H 0.19 4.39 5.62 -52.49 -0.29 4.09 16 35 H 0.28 6.90 8.31 -40.82 -0.34 6.56 16 36 H 0.14 2.76 8.06 -52.49 -0.42 2.34 16 LS Contribution 327.46 15.07 4.93 4.93 Total: -1.00 -31.95 327.46 -10.13 -42.07 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -3.54 Total: 9.45 kcal Atomic # 6 Polarization: -3.11 SS G_CDS: -4.66 Total: -7.76 kcal Atomic # 7 Polarization: -62.02 SS G_CDS: 0.65 Total: -61.37 kcal Atomic # 14 Polarization: 18.52 SS G_CDS: -5.02 Total: 13.49 kcal Atomic # 16 Polarization: 1.68 SS G_CDS: -2.49 Total: -0.82 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.95 -10.13 -42.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000142790405.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 193.521 kcal (2) G-P(sol) polarization free energy of solvation -31.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 161.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 151.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds