Wall clock time and date at job start Tue Mar 31 2020 10:34:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 C 1.31906 * 124.30458 * 90.00207 * 3 2 1 5 5 C 1.45060 * 114.81038 * 179.97438 * 4 3 2 6 6 C 1.39762 * 111.99958 * 0.02562 * 5 4 3 7 7 N 1.33901 * 119.10898 * 179.97438 * 6 5 4 8 8 C 1.31305 * 121.04469 * 0.04052 * 7 6 5 9 9 N 1.32057 * 122.18815 * 359.95509 * 8 7 6 10 10 C 1.32524 * 121.18797 * 0.02562 * 9 8 7 11 11 N 1.38303 * 120.53413 * 180.02562 * 10 9 8 12 12 C 1.40538 * 119.99832 * 359.97438 * 11 10 9 13 13 C 1.40671 * 126.08458 * 0.02562 * 12 11 10 14 14 N 1.30909 * 108.39131 * 179.97438 * 13 12 11 15 15 N 1.40067 * 108.40913 * 359.97438 * 14 13 12 16 16 C 1.37313 * 126.06696 * 179.97438 * 15 14 13 17 17 H 1.08003 * 119.99681 * 179.97438 * 16 15 14 18 18 C 1.38977 * 120.00181 * 359.97438 * 16 15 14 19 19 N 1.31310 * 119.99495 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 120.00061 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47169 * 59.99881 * 20 18 16 22 22 H 1.48501 * 109.47095 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47152 * 300.00169 * 20 18 16 24 24 C 1.35682 * 126.08117 * 179.71156 * 12 11 10 25 25 S 1.75351 * 124.30434 * 269.70091 * 3 2 1 26 26 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 27 27 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 29 29 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 30 30 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 31 31 H 1.07994 * 122.59523 * 359.97438 * 4 3 2 32 32 H 1.08002 * 118.90122 * 179.97438 * 8 7 6 33 33 H 0.96996 * 120.00340 * 179.97438 * 11 10 9 34 34 H 1.07999 * 125.80489 * 359.97438 * 13 12 11 35 35 H 0.97002 * 119.99120 * 179.97438 * 19 18 16 36 36 H 1.08001 * 126.24896 * 359.97438 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2801 2.1218 1.0896 5 6 2.7575 3.4705 0.8503 6 6 2.8582 3.7559 -0.5141 7 7 3.2859 4.9657 -0.8967 8 6 3.6102 5.8803 -0.0122 9 7 3.5326 5.6605 1.2877 10 6 3.1200 4.4943 1.7631 11 7 3.0435 4.2790 3.1272 12 6 3.4053 5.3012 4.0212 13 6 3.8597 6.5856 3.6712 14 7 4.0959 7.2543 4.7716 15 7 3.8024 6.4273 5.8633 16 6 3.9220 6.7654 7.1888 17 1 3.6668 6.0476 7.9543 18 6 4.3713 8.0314 7.5452 19 7 4.6819 8.9039 6.6144 20 14 4.5345 8.4911 9.3483 21 1 5.4945 7.5705 10.0089 22 1 5.0292 9.8868 9.4605 23 1 3.2092 8.3815 10.0091 24 6 3.3728 5.2267 5.3756 25 16 2.3688 2.3501 -1.4485 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 2.1385 1.7224 2.0830 32 1 3.9514 6.8444 -0.3593 33 1 2.7401 3.4226 3.4668 34 1 3.9914 6.9570 2.6657 35 1 4.9952 9.7876 6.8633 36 1 3.0644 4.3731 5.9610 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000142790405.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:34:41 Heat of formation + Delta-G solvation = 133.939062 kcal Electronic energy + Delta-G solvation = -22367.266733 eV Core-core repulsion = 18979.138709 eV Total energy + Delta-G solvation = -3388.128024 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 315.085 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.08244 -41.23945 -37.79022 -37.38644 -35.25151 -34.35077 -33.07773 -32.19378 -30.19151 -28.96065 -26.99640 -25.85917 -24.94214 -23.65682 -22.44783 -21.61592 -21.48888 -19.97380 -18.97952 -18.07827 -17.48664 -17.37307 -16.89110 -16.34495 -16.22083 -15.73518 -15.41282 -15.31608 -15.02055 -14.76923 -14.65585 -14.06910 -13.74060 -13.46681 -13.44775 -13.19428 -12.83420 -12.78795 -12.51638 -12.42080 -12.18515 -12.13727 -11.71852 -11.59354 -11.39496 -10.84102 -10.78580 -10.07550 -10.01932 -9.79721 -9.14093 -8.45912 -8.22712 -6.20464 -0.44775 0.11750 0.17528 0.89177 1.20809 1.33880 1.39868 1.55764 1.78945 1.93878 2.20302 2.42391 2.87293 2.89274 3.10159 3.33008 3.37882 3.65624 3.88385 3.97437 4.28300 4.43673 4.46917 4.51012 4.60850 4.77253 4.87474 4.97340 5.08622 5.10675 5.11188 5.21471 5.31418 5.34245 5.43786 5.74695 5.91287 6.08741 6.42650 6.57249 6.82116 7.31250 7.47207 7.71406 8.53031 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.026616 B = 0.002885 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.729303 B = 9704.656050 C =10662.698237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.050 4.050 3 C -0.167 4.167 4 C -0.103 4.103 5 C -0.240 4.240 6 C 0.089 3.911 7 N -0.559 5.559 8 C 0.347 3.653 9 N -0.600 5.600 10 C 0.469 3.531 11 N -0.580 5.580 12 C -0.047 4.047 13 C -0.045 4.045 14 N -0.311 5.311 15 N -0.170 5.170 16 C -0.356 4.356 17 H 0.137 0.863 18 C -0.005 4.005 19 N -0.822 5.822 20 Si 1.017 2.983 21 H -0.255 1.255 22 H -0.277 1.277 23 H -0.255 1.255 24 C -0.083 4.083 25 S 0.171 5.829 26 H 0.051 0.949 27 H 0.080 0.920 28 H 0.053 0.947 29 H 0.101 0.899 30 H 0.089 0.911 31 H 0.166 0.834 32 H 0.224 0.776 33 H 0.427 0.573 34 H 0.194 0.806 35 H 0.276 0.724 36 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.513 -17.324 -10.000 21.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.089 4.089 3 C -0.284 4.284 4 C -0.132 4.132 5 C -0.258 4.258 6 C -0.160 4.160 7 N -0.282 5.282 8 C 0.054 3.946 9 N -0.328 5.328 10 C 0.216 3.784 11 N -0.202 5.202 12 C -0.154 4.154 13 C -0.222 4.222 14 N -0.142 5.142 15 N 0.062 4.938 16 C -0.487 4.487 17 H 0.155 0.845 18 C -0.217 4.217 19 N -0.450 5.450 20 Si 0.836 3.164 21 H -0.179 1.179 22 H -0.202 1.202 23 H -0.179 1.179 24 C -0.234 4.234 25 S 0.430 5.570 26 H 0.071 0.929 27 H 0.098 0.902 28 H 0.072 0.928 29 H 0.120 0.880 30 H 0.108 0.892 31 H 0.183 0.817 32 H 0.240 0.760 33 H 0.266 0.734 34 H 0.210 0.790 35 H 0.086 0.914 36 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -5.811 -15.373 -11.262 19.923 hybrid contribution -0.245 -0.612 2.099 2.200 sum -6.056 -15.985 -9.164 19.395 Atomic orbital electron populations 1.21809 0.93665 1.03058 1.02132 1.20285 0.96563 0.87114 1.04980 1.24318 1.07111 1.02173 0.94779 1.20589 1.01481 0.90095 1.01029 1.20115 1.14427 0.97603 0.93693 1.24065 0.99114 0.98358 0.94468 1.68076 1.20210 1.00856 1.39097 1.25215 0.88419 0.98250 0.82674 1.67973 1.25523 1.21472 1.17797 1.18510 0.87010 0.88258 0.84601 1.40932 1.64369 1.14803 1.00109 1.17320 1.18251 0.91583 0.88203 1.24711 1.05601 0.92849 0.99017 1.78168 1.26235 1.17901 0.91870 1.44820 1.36300 1.06963 1.05711 1.20521 1.47577 1.01470 0.79089 0.84536 1.26818 0.94301 0.94936 1.05603 1.70386 1.33250 1.05508 1.35847 0.84686 0.79866 0.77825 0.74049 1.17874 1.20225 1.17879 1.21893 1.15181 0.93363 0.92992 1.83887 1.67259 0.99303 1.06571 0.92947 0.90154 0.92758 0.88031 0.89246 0.81664 0.75958 0.73412 0.78977 0.91402 0.80077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.89 71.98 0.71 -0.84 16 2 C -0.05 -0.56 6.37 29.85 0.19 -0.37 16 3 C -0.17 -3.08 5.64 24.84 0.14 -2.94 16 4 C -0.10 -2.22 9.85 23.18 0.23 -1.99 16 5 C -0.24 -7.16 6.08 -20.26 -0.12 -7.28 16 6 C 0.09 2.69 7.69 84.75 0.65 3.35 16 7 N -0.56 -18.21 10.47 -196.05 -2.05 -20.26 16 8 C 0.35 11.25 12.26 180.95 2.22 13.47 16 9 N -0.60 -22.61 6.59 -196.39 -1.29 -23.91 16 10 C 0.47 16.55 7.54 133.95 1.01 17.56 16 11 N -0.58 -20.21 5.59 -184.21 -1.03 -21.24 16 12 C -0.05 -2.09 6.92 37.75 0.26 -1.83 16 13 C -0.05 -2.32 10.85 85.42 0.93 -1.39 16 14 N -0.31 -18.19 10.39 -56.45 -0.59 -18.78 16 15 N -0.17 -9.29 3.74 -190.00 -0.71 -10.00 16 16 C -0.36 -18.70 10.25 84.01 0.86 -17.84 16 17 H 0.14 6.25 7.83 -2.91 -0.02 6.22 16 18 C 0.00 -0.25 5.50 84.95 0.47 0.22 16 19 N -0.82 -46.83 11.81 21.66 0.26 -46.58 16 20 Si 1.02 38.31 29.55 68.60 2.03 40.34 16 21 H -0.25 -9.00 7.11 99.48 0.71 -8.29 16 22 H -0.28 -10.35 7.11 99.48 0.71 -9.64 16 23 H -0.25 -9.00 7.11 99.48 0.71 -8.29 16 24 C -0.08 -3.80 11.50 83.37 0.96 -2.84 16 25 S 0.17 3.75 23.20 -56.49 -1.31 2.44 16 26 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.17 2.67 7.69 -2.91 -0.02 2.65 16 32 H 0.22 5.60 8.06 -2.91 -0.02 5.57 16 33 H 0.43 11.42 8.17 -92.71 -0.76 10.66 16 34 H 0.19 9.44 5.62 -2.91 -0.02 9.42 16 35 H 0.28 14.51 8.31 -92.71 -0.77 13.74 16 36 H 0.18 6.60 8.06 -2.91 -0.02 6.58 16 Total: -1.00 -72.92 327.46 4.19 -68.73 By element: Atomic # 1 Polarization: 31.60 SS G_CDS: 0.39 Total: 31.98 kcal Atomic # 6 Polarization: -11.23 SS G_CDS: 8.50 Total: -2.72 kcal Atomic # 7 Polarization: -135.36 SS G_CDS: -5.42 Total: -140.77 kcal Atomic # 14 Polarization: 38.31 SS G_CDS: 2.03 Total: 40.34 kcal Atomic # 16 Polarization: 3.75 SS G_CDS: -1.31 Total: 2.44 kcal Total: -72.92 4.19 -68.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000142790405.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 202.670 kcal (2) G-P(sol) polarization free energy of solvation -72.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds