Wall clock time and date at job start Tue Mar 31 2020 11:25:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35992 * 116.99843 * 2 1 4 4 C 1.38566 * 120.07358 * 359.72084 * 3 2 1 5 5 C 1.38243 * 120.00005 * 179.74788 * 4 3 2 6 6 C 1.38259 * 120.14555 * 0.50831 * 5 4 3 7 7 C 1.50699 * 119.92536 * 179.74435 * 6 5 4 8 8 N 1.46500 * 109.47172 * 270.01858 * 7 6 5 9 9 S 1.65598 * 119.99569 * 165.00157 * 8 7 6 10 10 O 1.42102 * 104.27598 * 181.07580 * 9 8 7 11 11 O 1.42100 * 104.27994 * 308.92947 * 9 8 7 12 12 C 1.81403 * 104.45144 * 65.00349 * 9 8 7 13 13 C 1.52997 * 109.47152 * 179.97438 * 12 9 8 14 14 C 1.50701 * 109.47095 * 179.97438 * 13 12 9 15 15 H 1.08002 * 119.99799 * 0.02562 * 14 13 12 16 16 C 1.37873 * 119.99844 * 180.02562 * 14 13 12 17 17 N 1.31517 * 120.00406 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 119.99884 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47406 * 59.99705 * 18 16 14 20 20 H 1.48498 * 109.47224 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47245 * 300.00163 * 18 16 14 22 22 C 1.38237 * 120.14360 * 359.76928 * 6 5 4 23 23 C 1.38569 * 120.00282 * 359.97438 * 22 6 5 24 24 O 1.35993 * 120.07217 * 180.02562 * 23 22 6 25 25 H 1.09001 * 109.47103 * 60.00803 * 1 2 3 26 26 H 1.09004 * 109.47054 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47187 * 300.00363 * 1 2 3 28 28 H 1.07999 * 120.00009 * 359.97438 * 4 3 2 29 29 H 1.07996 * 119.92686 * 180.25380 * 5 4 3 30 30 H 1.09000 * 109.47233 * 30.02958 * 7 6 5 31 31 H 1.09006 * 109.46493 * 150.02571 * 7 6 5 32 32 H 0.96997 * 120.00289 * 345.01155 * 8 7 6 33 33 H 1.08997 * 109.46886 * 300.00007 * 12 9 8 34 34 H 1.09001 * 109.46726 * 60.00062 * 12 9 8 35 35 H 1.08997 * 109.47525 * 300.00604 * 13 12 9 36 36 H 1.09007 * 109.46858 * 59.99956 * 13 12 9 37 37 H 0.96994 * 120.00019 * 179.97438 * 17 16 14 38 38 H 1.08004 * 120.00343 * 179.97438 * 22 6 5 39 39 H 0.96705 * 114.00435 * 269.97555 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2932 2.3748 -0.0058 5 6 1.9223 3.6057 -0.0006 6 6 3.3029 3.6799 -0.0001 7 6 3.9836 5.0244 -0.0001 8 7 4.2043 5.4600 -1.3814 9 16 4.5877 7.0391 -1.7002 10 8 4.6991 7.0937 -3.1158 11 8 3.5927 7.7867 -1.0144 12 6 6.2101 7.2766 -0.9243 13 6 6.6790 8.7149 -1.1525 14 6 8.0265 8.9123 -0.5074 15 1 8.5012 8.0936 0.0129 16 6 8.6533 10.1381 -0.5815 17 7 8.0750 11.1353 -1.2147 18 14 10.3240 10.3827 0.2175 19 1 11.3030 9.4422 -0.3842 20 1 10.7784 11.7791 -0.0028 21 1 10.2184 10.1212 1.6755 22 6 4.0602 2.5234 0.0000 23 6 3.4359 1.2864 0.0000 24 8 4.1796 0.1478 0.0006 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 0.2146 2.3196 -0.0108 29 1 1.3341 4.5114 -0.0010 30 1 3.3537 5.7506 0.5137 31 1 4.9418 4.9465 0.5137 32 1 4.1256 4.8235 -2.1091 33 1 6.1326 7.0848 0.1458 34 1 6.9286 6.5861 -1.3661 35 1 6.7565 8.9064 -2.2228 36 1 5.9605 9.4056 -0.7111 37 1 8.5158 11.9977 -1.2665 38 1 5.1386 2.5840 -0.0001 39 1 4.3947 -0.1820 -0.8826 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000158851215.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:00 Heat of formation + Delta-G solvation = -165.825324 kcal Electronic energy + Delta-G solvation = -23393.279579 eV Core-core repulsion = 19620.258374 eV Total energy + Delta-G solvation = -3773.021205 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.102 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.42256 -39.00595 -38.18708 -37.95836 -36.97470 -35.86117 -35.68152 -33.08955 -31.48788 -30.86882 -28.42101 -27.55741 -26.13935 -23.63779 -23.56291 -22.38781 -20.30437 -19.58142 -19.07587 -18.61639 -18.17362 -17.59326 -17.38713 -16.96580 -16.78295 -16.51145 -16.11031 -15.79455 -15.40740 -15.21651 -14.92940 -14.89195 -14.47037 -14.05996 -13.68949 -13.66992 -13.21969 -13.16755 -13.06289 -12.94789 -12.88286 -12.76443 -12.69746 -12.19736 -12.17072 -12.12900 -11.96874 -11.70870 -11.53178 -11.16903 -10.61691 -10.35167 -9.86722 -9.12613 -8.23861 -6.37523 -0.66426 0.20725 0.25689 1.42458 1.45617 1.53666 1.91185 2.29106 2.39739 2.61702 2.85620 3.09601 3.21016 3.33163 3.69033 3.82308 4.02392 4.06777 4.18462 4.31662 4.38078 4.38674 4.41194 4.50559 4.65123 4.73505 4.80323 4.90239 4.94047 5.13511 5.22006 5.31698 5.32640 5.54315 5.66652 5.71010 6.08797 6.13558 6.25907 6.76401 6.87275 7.32513 8.88090 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.024366 B = 0.002617 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.881178 B =10695.439095 C =11401.945751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.328 6.328 3 C 0.095 3.905 4 C -0.196 4.196 5 C -0.074 4.074 6 C -0.120 4.120 7 C 0.150 3.850 8 N -1.104 6.104 9 S 2.623 3.377 10 O -1.001 7.001 11 O -0.996 6.996 12 C -0.589 4.589 13 C 0.019 3.981 14 C -0.538 4.538 15 H 0.077 0.923 16 C -0.005 4.005 17 N -0.935 5.935 18 Si 0.973 3.027 19 H -0.264 1.264 20 H -0.286 1.286 21 H -0.263 1.263 22 C -0.090 4.090 23 C 0.057 3.943 24 O -0.500 6.500 25 H 0.067 0.933 26 H 0.118 0.882 27 H 0.064 0.936 28 H 0.155 0.845 29 H 0.142 0.858 30 H 0.089 0.911 31 H 0.097 0.903 32 H 0.424 0.576 33 H 0.145 0.855 34 H 0.144 0.856 35 H 0.005 0.995 36 H 0.008 0.992 37 H 0.267 0.733 38 H 0.153 0.847 39 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.541 -23.804 3.349 27.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.242 6.242 3 C 0.049 3.951 4 C -0.214 4.214 5 C -0.093 4.093 6 C -0.122 4.122 7 C 0.025 3.975 8 N -0.866 5.866 9 S 2.720 3.280 10 O -0.991 6.991 11 O -0.986 6.986 12 C -0.721 4.721 13 C -0.020 4.020 14 C -0.577 4.577 15 H 0.095 0.905 16 C -0.204 4.204 17 N -0.574 5.574 18 Si 0.797 3.203 19 H -0.188 1.188 20 H -0.211 1.211 21 H -0.187 1.187 22 C -0.109 4.109 23 C 0.011 3.989 24 O -0.312 6.312 25 H 0.085 0.915 26 H 0.136 0.864 27 H 0.083 0.917 28 H 0.172 0.828 29 H 0.159 0.841 30 H 0.107 0.893 31 H 0.116 0.884 32 H 0.260 0.740 33 H 0.164 0.836 34 H 0.162 0.838 35 H 0.024 0.976 36 H 0.026 0.974 37 H 0.075 0.925 38 H 0.170 0.830 39 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -14.044 -23.039 3.564 27.217 hybrid contribution 0.964 0.113 -0.360 1.035 sum -13.080 -22.926 3.204 26.589 Atomic orbital electron populations 1.23381 0.76483 1.05623 1.02367 1.86122 1.23363 1.26283 1.88436 1.19721 0.92069 0.85505 0.97853 1.21388 1.01333 0.91117 1.07608 1.21206 0.94067 0.98079 0.95962 1.19563 0.93729 0.93925 1.05014 1.20394 1.01702 0.93573 0.81785 1.55386 1.87457 1.28933 1.14807 1.04376 0.77145 0.73067 0.73441 1.93504 1.88280 1.86014 1.31299 1.93498 1.57200 1.71351 1.76532 1.30344 1.20515 1.06618 1.14590 1.18825 0.97626 0.88876 0.96673 1.21508 1.03446 0.97571 1.35173 0.90516 1.26116 1.02581 0.95749 0.95908 1.70095 1.40706 1.03094 1.43533 0.85377 0.78492 0.77228 0.79229 1.18842 1.21146 1.18748 1.21356 1.01509 0.89879 0.98120 1.17893 0.86535 0.86972 1.07462 1.84844 1.71728 1.39571 1.35042 0.91482 0.86416 0.91707 0.82781 0.84060 0.89268 0.88444 0.74033 0.83645 0.83805 0.97628 0.97403 0.92458 0.82970 0.73924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.81 113.37 1.11 1.25 16 2 O -0.33 -5.80 10.28 -79.59 -0.82 -6.61 16 3 C 0.09 1.76 6.70 22.57 0.15 1.91 16 4 C -0.20 -3.07 9.04 22.35 0.20 -2.87 16 5 C -0.07 -1.26 9.69 22.28 0.22 -1.04 16 6 C -0.12 -2.13 5.28 -19.86 -0.10 -2.24 16 7 C 0.15 2.85 6.25 85.63 0.54 3.38 16 8 N -1.10 -24.86 5.88 -190.78 -1.12 -25.98 16 9 S 2.62 88.15 5.46 -56.49 -0.31 87.84 16 10 O -1.00 -40.57 18.08 -127.65 -2.31 -42.88 16 11 O -1.00 -39.58 17.50 -127.65 -2.23 -41.82 16 12 C -0.59 -20.98 6.01 71.98 0.43 -20.54 16 13 C 0.02 0.97 4.98 29.85 0.15 1.11 16 14 C -0.54 -29.35 9.11 25.60 0.23 -29.11 16 15 H 0.08 3.83 7.74 -2.91 -0.02 3.81 16 16 C -0.01 -0.29 5.46 84.65 0.46 0.17 16 17 N -0.93 -56.63 13.29 21.45 0.28 -56.35 16 18 Si 0.97 42.96 29.54 68.60 2.03 44.98 16 19 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 20 H -0.29 -12.52 7.11 99.48 0.71 -11.81 16 21 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 22 C -0.09 -1.54 9.63 22.35 0.22 -1.33 16 23 C 0.06 1.08 6.72 22.57 0.15 1.23 16 24 O -0.50 -9.07 13.29 -79.60 -1.06 -10.13 16 25 H 0.07 0.46 7.65 -2.39 -0.02 0.44 16 26 H 0.12 0.61 8.14 -2.38 -0.02 0.59 16 27 H 0.06 0.48 7.68 -2.39 -0.02 0.46 16 28 H 0.15 1.64 6.30 -2.91 -0.02 1.62 16 29 H 0.14 2.12 8.06 -2.91 -0.02 2.10 16 30 H 0.09 1.75 7.64 -2.39 -0.02 1.73 16 31 H 0.10 1.45 8.08 -2.38 -0.02 1.43 16 32 H 0.42 8.12 8.61 -96.75 -0.83 7.29 16 33 H 0.15 4.37 8.14 -2.39 -0.02 4.35 16 34 H 0.14 4.45 8.14 -2.39 -0.02 4.43 16 35 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 36 H 0.01 0.42 8.14 -2.38 -0.02 0.40 16 37 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 38 H 0.15 2.17 8.06 -2.91 -0.02 2.14 16 39 H 0.40 3.75 9.07 -74.05 -0.67 3.08 16 Total: -1.00 -80.73 351.20 -2.19 -82.92 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: -0.41 Total: 16.10 kcal Atomic # 6 Polarization: -51.83 SS G_CDS: 3.76 Total: -48.07 kcal Atomic # 7 Polarization: -81.50 SS G_CDS: -0.84 Total: -82.33 kcal Atomic # 8 Polarization: -95.02 SS G_CDS: -6.42 Total: -101.44 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.98 kcal Atomic # 16 Polarization: 88.15 SS G_CDS: -0.31 Total: 87.84 kcal Total: -80.73 -2.19 -82.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158851215.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.901 kcal (2) G-P(sol) polarization free energy of solvation -80.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds