Wall clock time and date at job start Tue Mar 31 2020 11:25:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.36000 * 116.99754 * 2 1 4 4 C 1.38566 * 120.07384 * 359.97438 * 3 2 1 5 5 C 1.38242 * 119.99693 * 180.02562 * 4 3 2 6 6 C 1.38249 * 120.15187 * 359.97438 * 5 4 3 7 7 C 1.38251 * 120.13954 * 359.76896 * 6 5 4 8 8 C 1.50706 * 119.99733 * 180.25415 * 7 6 5 9 9 N 1.46496 * 109.47041 * 260.25228 * 8 7 6 10 10 S 1.65601 * 119.99870 * 165.00264 * 9 8 7 11 11 O 1.42099 * 104.27893 * 181.07081 * 10 9 8 12 12 O 1.42100 * 104.27603 * 308.92467 * 10 9 8 13 13 C 1.81395 * 104.45207 * 64.99591 * 10 9 8 14 14 C 1.53001 * 109.47200 * 180.02562 * 13 10 9 15 15 C 1.50700 * 109.47111 * 179.97438 * 14 13 10 16 16 H 1.08002 * 120.00201 * 0.02562 * 15 14 13 17 17 C 1.37871 * 120.00026 * 179.97438 * 15 14 13 18 18 N 1.31521 * 120.00183 * 180.02562 * 17 15 14 19 19 Si 1.86798 * 120.00313 * 0.02562 * 17 15 14 20 20 H 1.48495 * 109.47606 * 89.99281 * 19 17 15 21 21 H 1.48500 * 109.47460 * 210.00009 * 19 17 15 22 22 H 1.48512 * 109.46822 * 329.99517 * 19 17 15 23 23 C 1.38560 * 120.00124 * 0.50762 * 7 6 5 24 24 O 1.35995 * 120.07335 * 179.74420 * 23 7 6 25 25 H 1.09000 * 109.46657 * 299.99162 * 1 2 3 26 26 H 1.09000 * 109.47288 * 59.99078 * 1 2 3 27 27 H 1.09000 * 109.46820 * 179.97438 * 1 2 3 28 28 H 1.08002 * 119.99894 * 0.02562 * 4 3 2 29 29 H 1.08002 * 119.92299 * 179.97438 * 5 4 3 30 30 H 1.07990 * 119.93015 * 180.02562 * 6 5 4 31 31 H 1.09003 * 109.47257 * 20.25138 * 8 7 6 32 32 H 1.08998 * 109.47170 * 140.24854 * 8 7 6 33 33 H 0.96998 * 120.00463 * 344.99529 * 9 8 7 34 34 H 1.08999 * 109.47115 * 299.99993 * 13 10 9 35 35 H 1.09002 * 109.46796 * 60.00026 * 13 10 9 36 36 H 1.08999 * 109.47076 * 300.00012 * 14 13 10 37 37 H 1.09002 * 109.47229 * 60.00286 * 14 13 10 38 38 H 0.96996 * 120.00257 * 180.02562 * 18 17 15 39 39 H 0.96700 * 114.00111 * 269.72641 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2931 2.3748 -0.0005 5 6 1.9224 3.6058 -0.0011 6 6 3.3028 3.6800 -0.0005 7 6 4.0602 2.5234 0.0054 8 6 5.5649 2.6081 0.0117 9 7 6.0714 2.3990 -1.3469 10 16 7.6351 2.7983 -1.7181 11 8 7.7577 2.4879 -3.0993 12 8 7.7760 4.1332 -1.2520 13 6 8.6408 1.6660 -0.7196 14 6 10.1240 1.9393 -0.9769 15 6 10.9594 0.9990 -0.1468 16 1 10.4804 0.2782 0.4993 17 6 12.3353 1.0582 -0.2131 18 7 13.0644 0.2372 0.5110 19 14 13.1639 2.3043 -1.3311 20 1 13.3937 3.5657 -0.5820 21 1 14.4650 1.7620 -1.7983 22 1 12.2917 2.5758 -2.5020 23 6 3.4359 1.2864 0.0001 24 8 4.1795 0.1478 0.0006 25 1 -0.3633 0.5137 0.8901 26 1 -0.3634 0.5140 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 0.2145 2.3196 -0.0005 29 1 1.3341 4.5115 -0.0019 30 1 3.7906 4.6434 -0.0005 31 1 5.8720 3.5919 0.3666 32 1 5.9691 1.8411 0.6723 33 1 5.4910 2.0265 -2.0290 34 1 8.4212 1.8205 0.3368 35 1 8.4079 0.6366 -0.9923 36 1 10.3439 1.7851 -2.0333 37 1 10.3565 2.9686 -0.7038 38 1 14.0324 0.2791 0.4647 39 1 4.3946 -0.1819 -0.8826 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161115153.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:03 Heat of formation + Delta-G solvation = -129.764372 kcal Electronic energy + Delta-G solvation = -23869.767727 eV Core-core repulsion = 20098.310242 eV Total energy + Delta-G solvation = -3771.457485 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.102 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.80210 -38.44972 -36.81244 -36.70076 -35.61117 -35.13750 -33.93543 -31.46809 -30.82338 -30.04323 -27.67702 -25.95970 -25.72668 -22.78158 -21.70564 -21.27896 -19.11004 -18.80605 -18.00386 -17.48745 -16.89754 -16.82060 -16.35065 -16.12660 -15.61958 -15.52029 -14.86267 -14.70268 -14.40374 -14.29552 -14.02930 -13.58385 -13.12440 -12.78970 -12.69445 -12.54525 -12.47918 -11.88574 -11.80298 -11.74139 -11.65013 -11.55610 -11.38143 -11.24107 -11.18330 -10.75808 -10.44116 -10.15201 -9.83351 -9.48709 -9.17509 -9.10022 -8.64772 -8.46124 -6.14845 -4.16129 0.55493 0.88144 1.03693 2.84832 2.96810 3.27778 3.35055 3.35513 3.39139 3.93097 4.10463 4.31880 4.37208 4.48215 4.60590 4.68852 4.74520 4.88182 4.97053 4.98114 5.09039 5.15612 5.17689 5.46485 5.47884 5.55015 5.60260 5.77894 5.84495 6.01923 6.17390 6.29753 6.31624 6.83202 6.86450 6.92375 6.99186 7.50198 7.56354 8.38396 8.86844 9.44719 10.97569 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.024489 B = 0.003010 C = 0.002824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.079039 B = 9301.427637 C = 9911.674650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.307 6.307 3 C 0.098 3.902 4 C -0.193 4.193 5 C -0.090 4.090 6 C -0.123 4.123 7 C -0.082 4.082 8 C 0.159 3.841 9 N -1.122 6.122 10 S 2.591 3.409 11 O -0.966 6.966 12 O -0.966 6.966 13 C -0.582 4.582 14 C -0.007 4.007 15 C -0.519 4.519 16 H 0.078 0.922 17 C 0.071 3.929 18 N -0.896 5.896 19 Si 0.870 3.130 20 H -0.271 1.271 21 H -0.282 1.282 22 H -0.262 1.262 23 C 0.091 3.909 24 O -0.479 6.479 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.101 0.899 28 H 0.132 0.868 29 H 0.130 0.870 30 H 0.134 0.866 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.411 0.589 34 H 0.126 0.874 35 H 0.128 0.872 36 H 0.032 0.968 37 H 0.028 0.972 38 H 0.266 0.734 39 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.251 3.478 -1.416 27.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.220 6.220 3 C 0.053 3.947 4 C -0.212 4.212 5 C -0.108 4.108 6 C -0.142 4.142 7 C -0.084 4.084 8 C 0.033 3.967 9 N -0.879 5.879 10 S 2.688 3.312 11 O -0.957 6.957 12 O -0.956 6.956 13 C -0.715 4.715 14 C -0.047 4.047 15 C -0.558 4.558 16 H 0.096 0.904 17 C -0.131 4.131 18 N -0.534 5.534 19 Si 0.696 3.304 20 H -0.197 1.197 21 H -0.208 1.208 22 H -0.186 1.186 23 C 0.045 3.955 24 O -0.289 6.289 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.119 0.881 28 H 0.149 0.851 29 H 0.148 0.852 30 H 0.152 0.848 31 H 0.110 0.890 32 H 0.103 0.897 33 H 0.244 0.756 34 H 0.144 0.856 35 H 0.147 0.853 36 H 0.051 0.949 37 H 0.046 0.954 38 H 0.076 0.924 39 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -26.649 4.059 -1.229 26.985 hybrid contribution -0.039 -0.097 -0.780 0.787 sum -26.688 3.963 -2.010 27.056 Atomic orbital electron populations 1.23091 0.78481 1.04110 1.01258 1.86171 1.21174 1.26101 1.88582 1.19444 0.91695 0.84999 0.98610 1.21203 1.00124 0.91982 1.07849 1.20968 0.94504 0.97124 0.98252 1.21037 0.93586 0.98079 1.01476 1.19991 0.95735 0.91870 1.00823 1.20132 0.89561 1.03315 0.83701 1.55768 1.31254 1.82828 1.18021 1.05589 0.73633 0.76450 0.75478 1.93562 1.85116 1.85954 1.31048 1.93544 1.85110 1.34142 1.82786 1.30284 1.11536 1.15353 1.14310 1.19413 0.87735 0.98713 0.98800 1.20858 0.90719 1.18672 1.25562 0.90351 1.24991 0.97325 0.95569 0.95262 1.69884 1.05879 1.37411 1.40204 0.86921 0.79480 0.82021 0.81988 1.19684 1.20795 1.18617 1.17580 0.86107 0.86437 1.05404 1.84884 1.71534 1.39097 1.33347 0.92621 0.92683 0.88100 0.85069 0.85249 0.84774 0.88968 0.89691 0.75582 0.85607 0.85350 0.94946 0.95358 0.92391 0.75570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.81 101.05 0.99 1.14 16 2 O -0.31 -3.04 10.28 -34.24 -0.35 -3.40 16 3 C 0.10 1.00 6.70 -39.12 -0.26 0.74 16 4 C -0.19 -1.57 9.04 -39.46 -0.36 -1.92 16 5 C -0.09 -0.71 10.04 -39.58 -0.40 -1.11 16 6 C -0.12 -1.13 9.66 -39.57 -0.38 -1.51 16 7 C -0.08 -0.86 5.29 -104.50 -0.55 -1.41 16 8 C 0.16 1.76 5.92 -5.19 -0.03 1.73 16 9 N -1.12 -13.32 5.88 -11.66 -0.07 -13.39 16 10 S 2.59 42.32 5.46 -107.50 -0.59 41.74 16 11 O -0.97 -18.49 18.08 -57.54 -1.04 -19.53 16 12 O -0.97 -18.34 17.50 -57.54 -1.01 -19.34 16 13 C -0.58 -10.40 6.01 37.16 0.22 -10.18 16 14 C -0.01 -0.17 4.05 -27.88 -0.11 -0.28 16 15 C -0.52 -14.49 9.66 -34.44 -0.33 -14.82 16 16 H 0.08 2.30 7.99 -52.49 -0.42 1.88 16 17 C 0.07 2.05 5.47 -17.82 -0.10 1.96 16 18 N -0.90 -27.16 13.96 55.43 0.77 -26.39 16 19 Si 0.87 21.49 27.47 -169.99 -4.67 16.82 16 20 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.26 -6.25 6.54 56.52 0.37 -5.88 16 23 C 0.09 0.99 6.69 -39.12 -0.26 0.73 16 24 O -0.48 -5.26 12.52 -34.23 -0.43 -5.69 16 25 H 0.06 0.26 7.66 -51.93 -0.40 -0.14 16 26 H 0.05 0.24 7.66 -51.93 -0.40 -0.16 16 27 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.13 0.75 6.30 -52.49 -0.33 0.42 16 29 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 30 H 0.13 1.08 8.04 -52.49 -0.42 0.66 16 31 H 0.09 1.00 7.56 -51.93 -0.39 0.61 16 32 H 0.08 0.91 7.85 -51.93 -0.41 0.50 16 33 H 0.41 4.11 8.61 -34.47 -0.30 3.81 16 34 H 0.13 2.04 8.14 -51.92 -0.42 1.61 16 35 H 0.13 2.09 8.14 -51.92 -0.42 1.67 16 36 H 0.03 0.76 7.20 -51.93 -0.37 0.39 16 37 H 0.03 0.65 7.57 -51.93 -0.39 0.26 16 38 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 39 H 0.39 2.86 9.06 45.56 0.41 3.27 16 LS Contribution 346.52 15.07 5.22 5.22 Total: -1.00 -37.13 346.52 -8.00 -45.13 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -4.28 Total: 3.76 kcal Atomic # 6 Polarization: -23.37 SS G_CDS: -1.57 Total: -24.94 kcal Atomic # 7 Polarization: -40.49 SS G_CDS: 0.71 Total: -39.78 kcal Atomic # 8 Polarization: -45.13 SS G_CDS: -2.83 Total: -47.96 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.67 Total: 16.82 kcal Atomic # 16 Polarization: 42.32 SS G_CDS: -0.59 Total: 41.74 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -37.13 -8.00 -45.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161115153.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.633 kcal (2) G-P(sol) polarization free energy of solvation -37.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds