Wall clock time and date at job start Tue Mar 31 2020 11:25:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.36000 * 116.99754 * 2 1 4 4 C 1.38566 * 120.07384 * 359.97438 * 3 2 1 5 5 C 1.38242 * 119.99693 * 180.02562 * 4 3 2 6 6 C 1.38249 * 120.15187 * 359.97438 * 5 4 3 7 7 C 1.38251 * 120.13954 * 359.76896 * 6 5 4 8 8 C 1.50706 * 119.99733 * 180.25415 * 7 6 5 9 9 N 1.46496 * 109.47041 * 260.25228 * 8 7 6 10 10 S 1.65601 * 119.99870 * 165.00264 * 9 8 7 11 11 O 1.42099 * 104.27893 * 181.07081 * 10 9 8 12 12 O 1.42100 * 104.27603 * 308.92467 * 10 9 8 13 13 C 1.81395 * 104.45207 * 64.99591 * 10 9 8 14 14 C 1.53001 * 109.47200 * 180.02562 * 13 10 9 15 15 C 1.50700 * 109.47111 * 179.97438 * 14 13 10 16 16 H 1.08002 * 120.00201 * 0.02562 * 15 14 13 17 17 C 1.37871 * 120.00026 * 179.97438 * 15 14 13 18 18 N 1.31521 * 120.00183 * 180.02562 * 17 15 14 19 19 Si 1.86798 * 120.00313 * 0.02562 * 17 15 14 20 20 H 1.48495 * 109.47606 * 89.99281 * 19 17 15 21 21 H 1.48500 * 109.47460 * 210.00009 * 19 17 15 22 22 H 1.48512 * 109.46822 * 329.99517 * 19 17 15 23 23 C 1.38560 * 120.00124 * 0.50762 * 7 6 5 24 24 O 1.35995 * 120.07335 * 179.74420 * 23 7 6 25 25 H 1.09000 * 109.46657 * 299.99162 * 1 2 3 26 26 H 1.09000 * 109.47288 * 59.99078 * 1 2 3 27 27 H 1.09000 * 109.46820 * 179.97438 * 1 2 3 28 28 H 1.08002 * 119.99894 * 0.02562 * 4 3 2 29 29 H 1.08002 * 119.92299 * 179.97438 * 5 4 3 30 30 H 1.07990 * 119.93015 * 180.02562 * 6 5 4 31 31 H 1.09003 * 109.47257 * 20.25138 * 8 7 6 32 32 H 1.08998 * 109.47170 * 140.24854 * 8 7 6 33 33 H 0.96998 * 120.00463 * 344.99529 * 9 8 7 34 34 H 1.08999 * 109.47115 * 299.99993 * 13 10 9 35 35 H 1.09002 * 109.46796 * 60.00026 * 13 10 9 36 36 H 1.08999 * 109.47076 * 300.00012 * 14 13 10 37 37 H 1.09002 * 109.47229 * 60.00286 * 14 13 10 38 38 H 0.96996 * 120.00257 * 180.02562 * 18 17 15 39 39 H 0.96700 * 114.00111 * 269.72641 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2931 2.3748 -0.0005 5 6 1.9224 3.6058 -0.0011 6 6 3.3028 3.6800 -0.0005 7 6 4.0602 2.5234 0.0054 8 6 5.5649 2.6081 0.0117 9 7 6.0714 2.3990 -1.3469 10 16 7.6351 2.7983 -1.7181 11 8 7.7577 2.4879 -3.0993 12 8 7.7760 4.1332 -1.2520 13 6 8.6408 1.6660 -0.7196 14 6 10.1240 1.9393 -0.9769 15 6 10.9594 0.9990 -0.1468 16 1 10.4804 0.2782 0.4993 17 6 12.3353 1.0582 -0.2131 18 7 13.0644 0.2372 0.5110 19 14 13.1639 2.3043 -1.3311 20 1 13.3937 3.5657 -0.5820 21 1 14.4650 1.7620 -1.7983 22 1 12.2917 2.5758 -2.5020 23 6 3.4359 1.2864 0.0001 24 8 4.1795 0.1478 0.0006 25 1 -0.3633 0.5137 0.8901 26 1 -0.3634 0.5140 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 0.2145 2.3196 -0.0005 29 1 1.3341 4.5115 -0.0019 30 1 3.7906 4.6434 -0.0005 31 1 5.8720 3.5919 0.3666 32 1 5.9691 1.8411 0.6723 33 1 5.4910 2.0265 -2.0290 34 1 8.4212 1.8205 0.3368 35 1 8.4079 0.6366 -0.9923 36 1 10.3439 1.7851 -2.0333 37 1 10.3565 2.9686 -0.7038 38 1 14.0324 0.2791 0.4647 39 1 4.3946 -0.1819 -0.8826 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161115153.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:02 Heat of formation + Delta-G solvation = -160.123398 kcal Electronic energy + Delta-G solvation = -23871.084193 eV Core-core repulsion = 20098.310242 eV Total energy + Delta-G solvation = -3772.773951 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.102 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.46831 -39.13053 -38.16778 -37.50204 -37.03944 -36.07829 -35.87326 -33.45322 -31.60031 -30.67210 -28.19107 -27.86660 -26.54263 -23.45131 -23.18077 -22.38099 -20.38568 -19.53685 -19.39741 -18.75176 -18.14238 -17.61136 -17.36881 -16.99331 -16.87892 -16.36373 -16.21838 -16.06308 -15.45237 -15.16544 -15.07949 -14.81053 -14.67309 -14.03888 -13.76805 -13.49684 -13.24023 -13.20822 -13.11220 -13.07207 -13.04957 -12.92625 -12.71603 -12.21502 -12.16264 -11.99630 -11.91854 -11.69784 -11.48466 -11.31242 -10.82938 -10.41105 -9.79484 -9.12900 -8.34991 -6.40863 -0.73169 0.13439 0.35350 1.33760 1.35279 1.45646 1.82992 2.29234 2.31129 2.63502 2.76660 2.99045 3.24778 3.27730 3.59389 3.91446 3.93779 4.10296 4.14816 4.26001 4.33924 4.36519 4.39613 4.41789 4.59330 4.72136 4.75686 4.81118 4.89221 5.10308 5.15359 5.20154 5.36653 5.49338 5.49477 5.69476 6.04078 6.18655 6.29850 6.65772 6.85049 7.23542 8.80737 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.024489 B = 0.003010 C = 0.002824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.079039 B = 9301.427637 C = 9911.674650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.331 6.331 3 C 0.083 3.917 4 C -0.188 4.188 5 C -0.087 4.087 6 C -0.131 4.131 7 C -0.093 4.093 8 C 0.153 3.847 9 N -1.102 6.102 10 S 2.628 3.372 11 O -0.992 6.992 12 O -0.988 6.988 13 C -0.590 4.590 14 C -0.018 4.018 15 C -0.527 4.527 16 H 0.048 0.952 17 C 0.011 3.989 18 N -0.942 5.942 19 Si 0.927 3.073 20 H -0.260 1.260 21 H -0.275 1.275 22 H -0.248 1.248 23 C 0.072 3.928 24 O -0.496 6.496 25 H 0.065 0.935 26 H 0.069 0.931 27 H 0.114 0.886 28 H 0.157 0.843 29 H 0.158 0.842 30 H 0.144 0.856 31 H 0.096 0.904 32 H 0.087 0.913 33 H 0.423 0.577 34 H 0.139 0.861 35 H 0.141 0.859 36 H 0.033 0.967 37 H 0.033 0.967 38 H 0.269 0.731 39 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.476 5.027 -2.229 29.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.245 6.245 3 C 0.037 3.963 4 C -0.207 4.207 5 C -0.105 4.105 6 C -0.150 4.150 7 C -0.095 4.095 8 C 0.028 3.972 9 N -0.863 5.863 10 S 2.724 3.276 11 O -0.982 6.982 12 O -0.978 6.978 13 C -0.721 4.721 14 C -0.057 4.057 15 C -0.566 4.566 16 H 0.066 0.934 17 C -0.187 4.187 18 N -0.582 5.582 19 Si 0.750 3.250 20 H -0.185 1.185 21 H -0.201 1.201 22 H -0.171 1.171 23 C 0.026 3.974 24 O -0.307 6.307 25 H 0.084 0.916 26 H 0.087 0.913 27 H 0.132 0.868 28 H 0.175 0.825 29 H 0.176 0.824 30 H 0.162 0.838 31 H 0.114 0.886 32 H 0.105 0.895 33 H 0.259 0.741 34 H 0.158 0.842 35 H 0.159 0.841 36 H 0.051 0.949 37 H 0.051 0.949 38 H 0.078 0.922 39 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -28.882 5.596 -2.051 29.490 hybrid contribution 0.470 -0.653 -0.457 0.925 sum -28.411 4.943 -2.508 28.947 Atomic orbital electron populations 1.23364 0.76481 1.05487 1.02405 1.86134 1.23364 1.26371 1.88670 1.19635 0.91716 0.85833 0.99087 1.21532 1.01399 0.91352 1.06392 1.21316 0.94179 0.98165 0.96812 1.21273 0.94398 0.98029 1.01272 1.19922 0.95057 0.92334 1.02222 1.20271 0.90535 1.03623 0.82763 1.55301 1.29424 1.82545 1.19050 1.04277 0.73969 0.75264 0.74085 1.93524 1.85976 1.86123 1.32565 1.93515 1.85933 1.35328 1.83001 1.30301 1.08657 1.17113 1.16065 1.19378 0.90696 0.97740 0.97855 1.21200 0.91440 1.18659 1.25328 0.93381 1.25906 0.98251 0.97639 0.96895 1.70019 1.06362 1.39542 1.42255 0.85993 0.78734 0.79779 0.80525 1.18472 1.20052 1.17124 1.17793 0.86775 0.86419 1.06427 1.84840 1.71789 1.39502 1.34597 0.91593 0.91285 0.86803 0.82548 0.82394 0.83791 0.88598 0.89504 0.74132 0.84247 0.84096 0.94878 0.94872 0.92156 0.74326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.81 113.37 1.11 1.27 16 2 O -0.33 -6.20 10.28 -79.68 -0.82 -7.02 16 3 C 0.08 1.57 6.70 22.57 0.15 1.73 16 4 C -0.19 -2.57 9.04 22.35 0.20 -2.37 16 5 C -0.09 -1.11 10.04 22.27 0.22 -0.89 16 6 C -0.13 -2.12 9.66 22.28 0.22 -1.91 16 7 C -0.09 -1.82 5.29 -19.78 -0.10 -1.93 16 8 C 0.15 3.22 5.92 85.64 0.51 3.73 16 9 N -1.10 -24.56 5.88 -190.79 -1.12 -25.68 16 10 S 2.63 82.26 5.46 -56.49 -0.31 81.96 16 11 O -0.99 -36.54 18.08 -127.65 -2.31 -38.84 16 12 O -0.99 -35.98 17.50 -127.65 -2.23 -38.21 16 13 C -0.59 -20.70 6.01 71.98 0.43 -20.26 16 14 C -0.02 -0.82 4.05 29.85 0.12 -0.70 16 15 C -0.53 -29.92 9.66 25.60 0.25 -29.68 16 16 H 0.05 2.92 7.99 -2.91 -0.02 2.90 16 17 C 0.01 0.66 5.47 84.65 0.46 1.13 16 18 N -0.94 -58.40 13.96 21.45 0.30 -58.10 16 19 Si 0.93 43.93 27.47 68.60 1.88 45.82 16 20 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 21 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 22 H -0.25 -11.08 6.54 99.48 0.65 -10.43 16 23 C 0.07 1.51 6.69 22.57 0.15 1.66 16 24 O -0.50 -10.77 12.52 -79.62 -1.00 -11.77 16 25 H 0.07 0.46 7.66 -2.39 -0.02 0.44 16 26 H 0.07 0.43 7.66 -2.39 -0.02 0.41 16 27 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.16 1.24 6.30 -2.91 -0.02 1.22 16 29 H 0.16 1.07 8.06 -2.91 -0.02 1.05 16 30 H 0.14 1.98 8.04 -2.92 -0.02 1.96 16 31 H 0.10 1.95 7.56 -2.39 -0.02 1.93 16 32 H 0.09 1.79 7.85 -2.39 -0.02 1.77 16 33 H 0.42 7.77 8.61 -96.75 -0.83 6.94 16 34 H 0.14 4.44 8.14 -2.39 -0.02 4.42 16 35 H 0.14 4.51 8.14 -2.39 -0.02 4.49 16 36 H 0.03 1.52 7.20 -2.39 -0.02 1.51 16 37 H 0.03 1.50 7.57 -2.39 -0.02 1.48 16 38 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 39 H 0.40 5.83 9.06 -74.06 -0.67 5.16 16 Total: -1.00 -80.02 346.52 -2.35 -82.37 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: -0.47 Total: 17.71 kcal Atomic # 6 Polarization: -51.94 SS G_CDS: 3.72 Total: -48.22 kcal Atomic # 7 Polarization: -82.96 SS G_CDS: -0.82 Total: -83.78 kcal Atomic # 8 Polarization: -89.49 SS G_CDS: -6.36 Total: -95.85 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 1.88 Total: 45.82 kcal Atomic # 16 Polarization: 82.26 SS G_CDS: -0.31 Total: 81.96 kcal Total: -80.02 -2.35 -82.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161115153.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.758 kcal (2) G-P(sol) polarization free energy of solvation -80.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds