Wall clock time and date at job start Tue Mar 31 2020 10:35:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53005 * 109.47393 * 2 1 4 4 N 1.46508 * 109.46949 * 119.99490 * 2 1 3 5 5 C 1.34767 * 119.99985 * 301.13517 * 4 2 1 6 6 O 1.21280 * 120.00547 * 359.97438 * 5 4 2 7 7 C 1.50706 * 119.99804 * 180.02562 * 5 4 2 8 8 S 1.81000 * 109.47000 * 180.02562 * 7 5 4 9 9 C 1.76200 * 99.99902 * 179.97438 * 8 7 5 10 10 H 1.08001 * 119.99954 * 359.97438 * 9 8 7 11 11 C 1.38796 * 120.00057 * 179.97438 * 9 8 7 12 12 N 1.31632 * 120.00295 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 120.00109 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47326 * 0.02562 * 13 11 9 15 15 H 1.48504 * 109.47232 * 120.00043 * 13 11 9 16 16 H 1.48497 * 109.47785 * 240.00279 * 13 11 9 17 17 C 1.50694 * 109.47413 * 239.99809 * 2 1 3 18 18 C 1.38262 * 119.96477 * 264.76133 * 17 2 1 19 19 C 1.38216 * 120.06936 * 179.97438 * 18 17 2 20 20 C 1.38408 * 120.00236 * 0.02562 * 19 18 17 21 21 F 1.35096 * 120.03731 * 179.97438 * 20 19 18 22 22 C 1.38645 * 119.92711 * 0.02562 * 20 19 18 23 23 F 1.35102 * 120.03403 * 180.02562 * 22 20 19 24 24 C 1.38213 * 119.96705 * 84.48550 * 17 2 1 25 25 H 1.08999 * 109.47310 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47025 * 60.00292 * 1 2 3 27 27 H 1.08994 * 109.47671 * 300.00330 * 1 2 3 28 28 H 1.08994 * 109.46982 * 59.99247 * 3 2 1 29 29 H 1.09000 * 109.47598 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.46796 * 299.99848 * 3 2 1 31 31 H 0.96997 * 119.99345 * 121.13640 * 4 2 1 32 32 H 1.09000 * 109.46548 * 299.99942 * 7 5 4 33 33 H 1.08995 * 109.47337 * 60.00102 * 7 5 4 34 34 H 0.96996 * 120.00398 * 179.97438 * 12 11 9 35 35 H 1.07996 * 119.96341 * 359.97438 * 18 17 2 36 36 H 1.08005 * 119.99468 * 179.97438 * 19 18 17 37 37 H 1.08000 * 119.99812 * 0.02866 * 24 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0182 -0.6905 1.1963 5 6 1.6739 -0.2435 2.4201 6 8 0.9601 0.7307 2.5313 7 6 2.1767 -0.9535 3.6507 8 16 1.5451 -0.1204 5.1283 9 6 2.2658 -1.1295 6.3800 10 1 2.8852 -1.9706 6.1055 11 6 2.0376 -0.8435 7.7189 12 7 1.2823 0.1813 8.0536 13 14 2.8011 -1.9137 9.0460 14 1 3.6002 -2.9933 8.4125 15 1 3.6840 -1.0836 9.9043 16 1 1.7267 -2.5149 9.8763 17 6 2.0323 -0.7104 -1.2304 18 6 2.3656 -2.0507 -1.1662 19 6 2.8261 -2.7046 -2.2935 20 6 2.9545 -2.0175 -3.4881 21 9 3.4050 -2.6558 -4.5903 22 6 2.6213 -0.6732 -3.5522 23 9 2.7453 -0.0006 -4.7173 24 6 2.1540 -0.0229 -2.4232 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5138 0.8899 28 1 1.6766 1.9564 0.8899 29 1 3.1300 1.4426 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 2.5894 -1.4695 1.1074 32 1 1.8304 -1.9870 3.6407 33 1 3.2664 -0.9355 3.6608 34 1 1.1225 0.3810 8.9892 35 1 2.2661 -2.5873 -0.2342 36 1 3.0866 -3.7515 -2.2419 37 1 1.8895 1.0230 -2.4730 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176898166.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:35:24 Heat of formation + Delta-G solvation = -100.723370 kcal Electronic energy + Delta-G solvation = -23145.109545 eV Core-core repulsion = 19263.823857 eV Total energy + Delta-G solvation = -3881.285688 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.085 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.81471 -48.89065 -40.65092 -38.86738 -35.81362 -32.57853 -32.45984 -31.09807 -29.92140 -28.58378 -27.37501 -25.52215 -24.23533 -23.23924 -21.32098 -19.69355 -18.66982 -17.88971 -17.55098 -17.23225 -16.66349 -16.55372 -15.64702 -15.30119 -15.11024 -14.83599 -14.82569 -14.59628 -14.42750 -14.10688 -13.89298 -13.42430 -13.30473 -12.93238 -12.68168 -12.58927 -12.22034 -12.19669 -11.84722 -11.70043 -11.27413 -11.17255 -11.09210 -11.03433 -10.78775 -9.84093 -9.53401 -9.31883 -9.19453 -9.10310 -8.88328 -8.27721 -6.53682 -6.25335 -3.95887 0.45479 0.55040 2.83373 2.95635 3.02132 3.19192 3.24880 3.29102 3.36391 3.60172 3.96021 4.02231 4.15109 4.17030 4.52424 4.65112 4.79063 4.99491 5.09237 5.10288 5.24682 5.31012 5.40548 5.51240 5.54369 5.58702 5.66001 5.74093 5.81994 5.83870 5.88148 6.08451 6.25143 6.29640 6.31299 6.59339 7.56492 7.61138 8.31917 8.52962 9.20460 10.82085 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.028825 B = 0.002585 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.133422 B =10828.239979 C =11524.159898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.218 3.782 3 C -0.166 4.166 4 N -0.734 5.734 5 C 0.538 3.462 6 O -0.509 6.509 7 C -0.155 4.155 8 S -0.058 6.058 9 C -0.535 4.535 10 H 0.073 0.927 11 C 0.073 3.927 12 N -0.867 5.867 13 Si 0.918 3.082 14 H -0.272 1.272 15 H -0.280 1.280 16 H -0.280 1.280 17 C -0.059 4.059 18 C -0.099 4.099 19 C -0.118 4.118 20 C 0.062 3.938 21 F -0.130 7.130 22 C 0.072 3.928 23 F -0.128 7.128 24 C -0.116 4.116 25 H 0.057 0.943 26 H 0.063 0.937 27 H 0.093 0.907 28 H 0.090 0.910 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.397 0.603 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.268 0.732 35 H 0.143 0.857 36 H 0.149 0.851 37 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.735 -4.296 -22.464 23.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.132 3.868 3 C -0.224 4.224 4 N -0.391 5.391 5 C 0.324 3.676 6 O -0.383 6.383 7 C -0.306 4.306 8 S 0.169 5.831 9 C -0.684 4.684 10 H 0.091 0.909 11 C -0.136 4.136 12 N -0.503 5.503 13 Si 0.745 3.255 14 H -0.196 1.196 15 H -0.206 1.206 16 H -0.206 1.206 17 C -0.060 4.060 18 C -0.118 4.118 19 C -0.136 4.136 20 C 0.042 3.958 21 F -0.108 7.108 22 C 0.052 3.948 23 F -0.106 7.106 24 C -0.135 4.135 25 H 0.077 0.923 26 H 0.082 0.918 27 H 0.111 0.889 28 H 0.109 0.891 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.233 0.767 32 H 0.108 0.892 33 H 0.108 0.892 34 H 0.078 0.922 35 H 0.161 0.839 36 H 0.167 0.833 37 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 1.482 -2.555 -22.215 22.410 hybrid contribution 1.782 -2.287 0.174 2.905 sum 3.264 -4.842 -22.041 22.801 Atomic orbital electron populations 1.22266 0.92558 1.02856 1.04259 1.19031 0.94710 0.91939 0.81116 1.22331 1.01402 0.94539 1.04111 1.46290 1.54248 1.33677 1.04880 1.20247 0.79698 0.84128 0.83518 1.90642 1.35673 1.25891 1.86106 1.23555 1.04515 1.03896 0.98613 1.85380 1.66042 1.39864 0.91844 1.22903 1.36287 1.16583 0.92602 0.90890 1.24991 0.95044 0.95573 0.97978 1.70020 1.35618 1.26493 1.18128 0.86121 0.78893 0.79821 0.80682 1.19617 1.20566 1.20561 1.19875 0.97638 0.93871 0.94572 1.20959 0.98260 0.93831 0.98703 1.21087 1.00684 1.01341 0.90537 1.17720 1.03570 0.89695 0.84821 1.91534 1.86712 1.81431 1.51138 1.17626 1.04677 0.89184 0.83288 1.91543 1.93786 1.79757 1.45550 1.20962 1.00524 1.01665 0.90370 0.92348 0.91847 0.88875 0.89134 0.92225 0.91733 0.76726 0.89235 0.89222 0.92213 0.83927 0.83350 0.83056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.80 8.37 37.15 0.31 -1.49 16 2 C 0.22 2.30 0.89 -132.97 -0.12 2.18 16 3 C -0.17 -1.82 7.86 37.16 0.29 -1.53 16 4 N -0.73 -8.65 4.88 -48.68 -0.24 -8.88 16 5 C 0.54 8.95 7.27 -10.99 -0.08 8.87 16 6 O -0.51 -10.13 12.07 5.56 0.07 -10.07 16 7 C -0.16 -2.91 6.16 36.01 0.22 -2.69 16 8 S -0.06 -1.50 20.57 -107.50 -2.21 -3.71 16 9 C -0.54 -14.83 9.50 30.94 0.29 -14.53 16 10 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 11 C 0.07 2.05 5.49 -17.43 -0.10 1.95 16 12 N -0.87 -25.64 13.22 55.49 0.73 -24.90 16 13 Si 0.92 20.98 29.55 -169.99 -5.02 15.96 16 14 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 15 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 16 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 17 C -0.06 -0.51 4.80 -104.63 -0.50 -1.01 16 18 C -0.10 -0.73 9.02 -39.58 -0.36 -1.09 16 19 C -0.12 -0.86 10.02 -39.53 -0.40 -1.25 16 20 C 0.06 0.57 7.31 -39.37 -0.29 0.28 16 21 F -0.13 -1.33 17.18 2.25 0.04 -1.29 16 22 C 0.07 0.69 7.31 -39.37 -0.29 0.40 16 23 F -0.13 -1.34 17.18 2.25 0.04 -1.31 16 24 C -0.12 -0.98 9.12 -39.53 -0.36 -1.34 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.09 1.32 6.09 -51.93 -0.32 1.00 16 28 H 0.09 1.27 6.25 -51.93 -0.32 0.94 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.55 6.52 -51.93 -0.34 0.22 16 31 H 0.40 3.60 6.40 -40.82 -0.26 3.34 16 32 H 0.09 1.54 8.14 -51.92 -0.42 1.12 16 33 H 0.09 1.56 8.14 -51.92 -0.42 1.14 16 34 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 35 H 0.14 0.84 6.41 -52.49 -0.34 0.50 16 36 H 0.15 0.76 8.06 -52.48 -0.42 0.33 16 37 H 0.15 1.07 6.34 -52.49 -0.33 0.74 16 LS Contribution 331.98 15.07 5.00 5.00 Total: -1.00 -32.48 331.98 -6.95 -39.42 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: -3.99 Total: 1.02 kcal Atomic # 6 Polarization: -9.87 SS G_CDS: -1.37 Total: -11.24 kcal Atomic # 7 Polarization: -34.28 SS G_CDS: 0.50 Total: -33.79 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: 0.07 Total: -10.07 kcal Atomic # 9 Polarization: -2.68 SS G_CDS: 0.08 Total: -2.60 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 16 Polarization: -1.50 SS G_CDS: -2.21 Total: -3.71 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.48 -6.95 -39.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176898166.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.300 kcal (2) G-P(sol) polarization free energy of solvation -32.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds