Wall clock time and date at job start Tue Mar 31 2020 11:09:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35904 * 116.99965 * 2 1 4 4 C 1.38633 * 120.02779 * 0.02562 * 3 2 1 5 5 C 1.38627 * 119.89344 * 179.97438 * 4 3 2 6 6 O 1.35896 * 120.03213 * 179.97438 * 5 4 3 7 7 C 1.42897 * 116.99737 * 0.02562 * 6 5 4 8 8 C 1.38774 * 119.94301 * 359.97438 * 5 4 3 9 9 C 1.38177 * 120.05405 * 359.97438 * 8 5 4 10 10 S 1.76198 * 119.94300 * 179.97438 * 9 8 5 11 11 O 1.42100 * 106.40654 * 336.45754 * 10 9 8 12 12 O 1.42104 * 106.40203 * 203.53844 * 10 9 8 13 13 N 1.65601 * 107.21983 * 89.99935 * 10 9 8 14 14 C 1.46500 * 119.99880 * 64.99705 * 13 10 9 15 15 H 1.09002 * 109.47092 * 335.00170 * 14 13 10 16 16 C 1.52997 * 109.47007 * 95.00118 * 14 13 10 17 17 C 1.50701 * 109.47209 * 215.00211 * 14 13 10 18 18 H 1.07999 * 119.99742 * 0.02562 * 17 14 13 19 19 C 1.37875 * 120.00221 * 180.02562 * 17 14 13 20 20 N 1.31519 * 119.99615 * 359.97438 * 19 17 14 21 21 Si 1.86792 * 119.99983 * 179.97438 * 19 17 14 22 22 H 1.48498 * 109.47420 * 60.00025 * 21 19 17 23 23 H 1.48503 * 109.47178 * 179.97438 * 21 19 17 24 24 H 1.48496 * 109.47539 * 299.99718 * 21 19 17 25 25 C 1.38172 * 120.10923 * 0.27283 * 9 8 5 26 26 H 1.09006 * 109.47210 * 59.99719 * 1 2 3 27 27 H 1.09001 * 109.46978 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47002 * 300.00041 * 1 2 3 29 29 H 1.08005 * 120.05276 * 359.97438 * 4 3 2 30 30 H 1.08996 * 109.47362 * 299.99956 * 7 6 5 31 31 H 1.09004 * 109.47519 * 59.99781 * 7 6 5 32 32 H 1.08998 * 109.47378 * 179.97438 * 7 6 5 33 33 H 1.08005 * 119.97575 * 179.97438 * 8 5 4 34 34 H 0.96996 * 120.00261 * 245.00081 * 13 10 9 35 35 H 1.08998 * 109.47533 * 179.97438 * 16 14 13 36 36 H 1.08996 * 109.47853 * 300.00060 * 16 14 13 37 37 H 1.09002 * 109.47153 * 60.00089 * 16 14 13 38 38 H 0.96997 * 119.99545 * 180.02562 * 20 19 17 39 39 H 1.08003 * 119.96880 * 179.72088 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2915 2.3740 0.0005 5 6 1.9237 3.6077 0.0011 6 8 1.1869 4.7495 0.0011 7 6 -0.2347 4.6042 0.0011 8 6 3.3098 3.6757 0.0016 9 6 4.0596 2.5150 0.0021 10 16 5.8193 2.6048 0.0021 11 8 6.1565 3.8730 -0.5429 12 8 6.2837 1.3768 -0.5417 13 7 6.3089 2.6305 1.5839 14 6 6.0724 1.4675 2.4428 15 1 5.2242 0.8997 2.0603 16 6 7.3181 0.5791 2.4527 17 6 5.7749 1.9311 3.8456 18 1 5.7628 2.9865 4.0742 19 6 5.5183 1.0079 4.8370 20 7 5.5327 -0.2773 4.5583 21 14 5.1503 1.5826 6.5757 22 1 3.9412 2.4448 6.5667 23 1 4.9105 0.4038 7.4464 24 1 6.3059 2.3562 7.0965 25 6 3.4317 1.2842 -0.0035 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 0.2128 2.3189 0.0005 30 1 -0.5439 4.0561 -0.8889 31 1 -0.5439 4.0560 0.8910 32 1 -0.7007 5.5896 0.0015 33 1 3.8029 4.6366 0.0016 34 1 6.7521 3.4155 1.9418 35 1 7.1424 -0.2860 3.0921 36 1 7.5333 0.2437 1.4382 37 1 8.1662 1.1469 2.8353 38 1 5.3518 -0.9268 5.2557 39 1 4.0200 0.3785 -0.0077 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178413820.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:53 Heat of formation + Delta-G solvation = -120.070929 kcal Electronic energy + Delta-G solvation = -25014.574778 eV Core-core repulsion = 21243.537632 eV Total energy + Delta-G solvation = -3771.037145 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.102 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.54695 -38.88632 -36.71569 -36.65464 -35.40441 -35.28861 -32.18261 -30.56675 -30.38234 -28.25331 -28.12865 -26.72023 -25.19296 -22.75826 -22.51195 -20.92334 -19.55132 -18.39836 -17.36544 -17.09481 -16.24083 -16.08795 -16.03907 -15.99227 -15.84625 -15.58898 -15.15431 -14.80500 -14.52631 -13.60891 -13.31623 -12.87655 -12.78829 -12.62043 -12.36792 -12.16981 -11.72905 -11.70364 -11.60502 -11.59256 -11.50512 -11.23475 -11.15930 -10.96791 -10.85731 -10.66448 -10.58546 -10.25514 -10.09327 -9.17986 -8.97513 -8.61101 -8.29352 -7.98149 -6.11789 -4.19850 0.78010 1.08566 1.46664 3.10468 3.19281 3.26008 3.30955 3.32897 3.44260 3.79965 4.30651 4.35626 4.71587 4.72719 4.84032 4.92108 4.94191 4.98946 5.05243 5.11402 5.19869 5.24501 5.32076 5.41354 5.68355 6.10361 6.16039 6.24795 6.34793 6.37589 6.85551 7.05410 7.08476 7.12183 7.41254 7.60136 7.72499 7.83701 8.05772 8.29088 8.82940 9.46169 10.93777 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.010659 B = 0.005603 C = 0.004785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2626.348606 B = 4996.359986 C = 5849.846985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.307 6.307 3 C 0.147 3.853 4 C -0.251 4.251 5 C 0.141 3.859 6 O -0.311 6.311 7 C 0.026 3.974 8 C -0.086 4.086 9 C -0.590 4.590 10 S 2.692 3.308 11 O -0.977 6.977 12 O -0.956 6.956 13 N -1.096 6.096 14 C 0.273 3.727 15 H 0.043 0.957 16 C -0.158 4.158 17 C -0.526 4.526 18 H 0.064 0.936 19 C 0.065 3.935 20 N -0.885 5.885 21 Si 0.899 3.101 22 H -0.278 1.278 23 H -0.286 1.286 24 H -0.275 1.275 25 C -0.076 4.076 26 H 0.052 0.948 27 H 0.102 0.898 28 H 0.055 0.945 29 H 0.138 0.862 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.101 0.899 33 H 0.148 0.852 34 H 0.411 0.589 35 H 0.092 0.908 36 H 0.026 0.974 37 H 0.032 0.968 38 H 0.265 0.735 39 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.859 4.417 -8.368 15.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.220 6.220 3 C 0.100 3.900 4 C -0.271 4.271 5 C 0.095 3.905 6 O -0.225 6.225 7 C -0.069 4.069 8 C -0.106 4.106 9 C -0.674 4.674 10 S 2.778 3.222 11 O -0.967 6.967 12 O -0.946 6.946 13 N -0.858 5.858 14 C 0.169 3.831 15 H 0.061 0.939 16 C -0.218 4.218 17 C -0.566 4.566 18 H 0.082 0.918 19 C -0.138 4.138 20 N -0.523 5.523 21 Si 0.726 3.274 22 H -0.203 1.203 23 H -0.212 1.212 24 H -0.201 1.201 25 C -0.096 4.096 26 H 0.071 0.929 27 H 0.121 0.879 28 H 0.074 0.926 29 H 0.155 0.845 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.120 0.880 33 H 0.166 0.834 34 H 0.245 0.755 35 H 0.110 0.890 36 H 0.045 0.955 37 H 0.051 0.949 38 H 0.075 0.925 39 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -11.353 4.078 -9.092 15.106 hybrid contribution -1.502 0.491 1.599 2.248 sum -12.855 4.569 -7.493 15.565 Atomic orbital electron populations 1.23078 0.78616 1.04184 1.01041 1.86153 1.21184 1.26246 1.88411 1.18735 0.92072 0.83754 0.95416 1.21429 1.00464 0.92172 1.12994 1.18693 0.91161 0.84538 0.96136 1.86103 1.18978 1.28678 1.88712 1.23069 0.78684 1.03957 1.01216 1.19977 0.90554 0.98285 1.01793 1.31051 1.27972 0.97315 1.11032 1.01973 0.73279 0.73397 0.73544 1.93533 1.82697 1.42573 1.77860 1.93581 1.77931 1.45721 1.77369 1.55551 1.73011 1.27290 1.29915 1.18576 0.94307 0.80816 0.89417 0.93902 1.22237 0.97981 1.02047 0.99512 1.21254 1.48854 0.93472 0.92981 0.91791 1.24903 0.95018 0.94846 0.99018 1.69871 1.48461 1.00331 1.33663 0.86557 0.78887 0.78095 0.83850 1.20318 1.21201 1.20092 1.20131 0.91786 0.97544 1.00137 0.92899 0.87924 0.92637 0.84479 0.92805 0.92622 0.88022 0.83407 0.75505 0.88964 0.95458 0.94856 0.92535 0.82951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.81 101.05 0.99 1.24 16 2 O -0.31 -4.60 10.50 -19.44 -0.20 -4.81 16 3 C 0.15 2.40 6.68 -39.24 -0.26 2.14 16 4 C -0.25 -3.58 8.02 -39.29 -0.32 -3.90 16 5 C 0.14 2.18 6.68 -39.24 -0.26 1.91 16 6 O -0.31 -4.21 10.50 -19.41 -0.20 -4.41 16 7 C 0.03 0.22 9.81 101.05 0.99 1.22 16 8 C -0.09 -1.47 9.46 -39.41 -0.37 -1.84 16 9 C -0.59 -10.81 5.81 -39.63 -0.23 -11.04 16 10 S 2.69 51.80 5.65 -107.50 -0.61 51.19 16 11 O -0.98 -19.36 17.28 -57.17 -0.99 -20.35 16 12 O -0.96 -20.44 16.53 -57.17 -0.95 -21.39 16 13 N -1.10 -22.18 5.46 -5.88 -0.03 -22.21 16 14 C 0.27 6.54 2.76 -69.08 -0.19 6.35 16 15 H 0.04 1.08 7.24 -51.93 -0.38 0.71 16 16 C -0.16 -3.79 9.29 37.16 0.35 -3.45 16 17 C -0.53 -13.59 8.76 -34.44 -0.30 -13.89 16 18 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 19 C 0.07 1.72 5.30 -17.82 -0.09 1.62 16 20 N -0.89 -24.12 11.32 55.43 0.63 -23.49 16 21 Si 0.90 20.48 29.54 -169.99 -5.02 15.46 16 22 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 23 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 24 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 25 C -0.08 -1.40 8.85 -39.41 -0.35 -1.75 16 26 H 0.05 0.41 7.66 -51.93 -0.40 0.02 16 27 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.06 0.49 7.66 -51.93 -0.40 0.09 16 29 H 0.14 1.46 4.54 -52.48 -0.24 1.22 16 30 H 0.05 0.39 7.66 -51.93 -0.40 -0.01 16 31 H 0.06 0.44 7.66 -51.93 -0.40 0.05 16 32 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.15 2.34 7.61 -52.48 -0.40 1.94 16 34 H 0.41 7.48 8.83 -34.47 -0.30 7.18 16 35 H 0.09 2.38 6.07 -51.93 -0.32 2.07 16 36 H 0.03 0.61 7.64 -51.93 -0.40 0.22 16 37 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.26 6.89 8.31 -40.82 -0.34 6.56 16 39 H 0.15 2.83 7.60 -52.48 -0.40 2.43 16 LS Contribution 340.05 15.07 5.12 5.12 Total: -1.00 -32.38 340.05 -7.13 -39.51 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -4.83 Total: 6.74 kcal Atomic # 6 Polarization: -21.32 SS G_CDS: -0.05 Total: -21.37 kcal Atomic # 7 Polarization: -46.30 SS G_CDS: 0.60 Total: -45.71 kcal Atomic # 8 Polarization: -48.62 SS G_CDS: -2.34 Total: -50.96 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Atomic # 16 Polarization: 51.80 SS G_CDS: -0.61 Total: 51.19 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.38 -7.13 -39.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178413820.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.556 kcal (2) G-P(sol) polarization free energy of solvation -32.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds