Wall clock time and date at job start Tue Mar 31 2020 10:47:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47072 * 2 1 4 4 H 1.09001 * 109.46995 * 54.34967 * 3 2 1 5 5 C 1.50703 * 109.47158 * 174.35511 * 3 2 1 6 6 H 1.07996 * 120.00052 * 87.46654 * 5 3 2 7 7 C 1.37877 * 119.99694 * 267.46526 * 5 3 2 8 8 N 1.31513 * 120.00011 * 176.07000 * 7 5 3 9 9 Si 1.86800 * 120.00176 * 356.06588 * 7 5 3 10 10 H 1.48503 * 109.47284 * 275.08677 * 9 7 5 11 11 H 1.48503 * 109.47330 * 35.09078 * 9 7 5 12 12 H 1.48500 * 109.47245 * 155.08920 * 9 7 5 13 13 N 1.46500 * 109.47016 * 294.35292 * 3 2 1 14 14 C 1.34780 * 119.99800 * 85.00153 * 13 3 2 15 15 O 1.21285 * 120.00088 * 359.97438 * 14 13 3 16 16 C 1.50699 * 120.00031 * 180.02562 * 14 13 3 17 17 S 1.81395 * 109.47339 * 179.97438 * 16 14 13 18 18 C 1.76202 * 103.00227 * 179.97438 * 17 16 14 19 19 C 1.38950 * 120.04881 * 179.97438 * 18 17 16 20 20 C 1.38119 * 119.99473 * 179.97438 * 19 18 17 21 21 C 1.38430 * 120.07467 * 0.02562 * 20 19 18 22 22 F 1.35101 * 119.95376 * 179.97438 * 21 20 19 23 23 C 1.38676 * 120.09035 * 359.97438 * 21 20 19 24 24 F 1.35101 * 119.99591 * 180.02562 * 23 21 20 25 25 C 1.38310 * 120.01350 * 359.75319 * 23 21 20 26 26 H 1.09004 * 109.47192 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47467 * 300.00157 * 1 2 3 28 28 H 1.08999 * 109.47294 * 60.00338 * 1 2 3 29 29 H 1.08996 * 109.47467 * 239.99843 * 2 1 3 30 30 H 1.09004 * 109.46856 * 119.99736 * 2 1 3 31 31 H 0.97000 * 120.00194 * 180.02562 * 8 7 5 32 32 H 0.96999 * 120.00500 * 265.00098 * 13 3 2 33 33 H 1.09004 * 109.46977 * 300.00150 * 16 14 13 34 34 H 1.09007 * 109.47227 * 59.99745 * 16 14 13 35 35 H 1.08006 * 120.00695 * 0.02562 * 19 18 17 36 36 H 1.07993 * 119.96209 * 180.02562 * 20 19 18 37 37 H 1.07998 * 120.04547 * 180.27429 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5964 1.9847 0.8351 5 6 3.5405 1.4448 0.1398 6 1 4.1648 1.3737 -0.7386 7 6 4.1163 1.5378 1.3891 8 7 5.4229 1.4621 1.5182 9 14 3.0406 1.7713 2.8983 10 1 2.7491 3.2161 3.0797 11 1 1.7675 1.0282 2.7186 12 1 3.7500 1.2553 4.0965 13 7 1.6658 2.0927 -1.2583 14 6 0.4497 2.6592 -1.3885 15 8 -0.3349 2.6302 -0.4641 16 6 0.0645 3.3276 -2.6831 17 16 -1.6197 3.9871 -2.5453 18 6 -1.8893 4.7188 -4.1254 19 6 -3.0995 5.3408 -4.4067 20 6 -3.3095 5.9145 -5.6455 21 6 -2.3155 5.8702 -6.6080 22 9 -2.5237 6.4317 -7.8190 23 6 -1.1064 5.2503 -6.3307 24 9 -0.1375 5.2087 -7.2713 25 6 -0.8901 4.6796 -5.0896 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 5.8280 1.5271 2.3972 32 1 2.2931 2.1156 -1.9978 33 1 0.7582 4.1421 -2.8919 34 1 0.1042 2.5998 -3.4936 35 1 -3.8758 5.3764 -3.6566 36 1 -4.2502 6.3981 -5.8634 37 1 0.0530 4.2006 -4.8716 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183844973.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:44 Heat of formation + Delta-G solvation = -106.409841 kcal Electronic energy + Delta-G solvation = -22935.226078 eV Core-core repulsion = 19053.693806 eV Total energy + Delta-G solvation = -3881.532272 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.085 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.75702 -48.82941 -39.34027 -39.08102 -35.37058 -32.57770 -32.04138 -31.50656 -30.71877 -29.56558 -27.35404 -23.73961 -23.38760 -22.85145 -20.87262 -19.73086 -18.83647 -17.90375 -17.61939 -17.22669 -16.61276 -16.31526 -16.18498 -15.78531 -15.43026 -15.24082 -14.91011 -14.55110 -14.37459 -14.11295 -13.68759 -13.34765 -13.23751 -12.85299 -12.82469 -12.60856 -12.13779 -11.95909 -11.85081 -11.68369 -11.01688 -10.80852 -10.76007 -10.48989 -10.07960 -9.93988 -9.93405 -9.45837 -9.40869 -9.29657 -8.80019 -8.21009 -7.62455 -6.31491 -4.36143 0.43698 0.57220 1.06618 2.07209 2.88082 2.96274 3.20752 3.29086 3.35456 3.45839 3.72859 3.99179 4.14979 4.25237 4.52083 4.63359 4.84734 4.91564 5.00406 5.06243 5.23072 5.34639 5.42168 5.55440 5.65884 5.96577 6.00768 6.15578 6.29926 6.54133 6.69890 6.84291 6.90149 7.16672 7.22636 7.41721 7.96812 8.39238 8.64656 8.74273 9.29475 10.79990 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.024473 B = 0.002821 C = 0.002686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.839624 B = 9923.088057 C =10422.974760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.126 4.126 3 C 0.239 3.761 4 H 0.052 0.948 5 C -0.534 4.534 6 H 0.079 0.921 7 C 0.083 3.917 8 N -0.887 5.887 9 Si 0.872 3.128 10 H -0.272 1.272 11 H -0.258 1.258 12 H -0.285 1.285 13 N -0.694 5.694 14 C 0.518 3.482 15 O -0.534 6.534 16 C -0.160 4.160 17 S 0.000 6.000 18 C -0.082 4.082 19 C -0.085 4.085 20 C -0.103 4.103 21 C 0.051 3.949 22 F -0.130 7.130 23 C 0.092 3.908 24 F -0.126 7.126 25 C -0.150 4.150 26 H 0.031 0.969 27 H 0.051 0.949 28 H 0.048 0.952 29 H 0.052 0.948 30 H 0.062 0.938 31 H 0.269 0.731 32 H 0.395 0.605 33 H 0.117 0.883 34 H 0.115 0.885 35 H 0.147 0.853 36 H 0.150 0.850 37 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.372 6.812 -13.862 21.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.165 4.165 3 C 0.137 3.863 4 H 0.070 0.930 5 C -0.572 4.572 6 H 0.097 0.903 7 C -0.122 4.122 8 N -0.522 5.522 9 Si 0.698 3.302 10 H -0.198 1.198 11 H -0.182 1.182 12 H -0.211 1.211 13 N -0.342 5.342 14 C 0.301 3.699 15 O -0.412 6.412 16 C -0.312 4.312 17 S 0.247 5.753 18 C -0.196 4.196 19 C -0.109 4.109 20 C -0.124 4.124 21 C 0.028 3.972 22 F -0.109 7.109 23 C 0.070 3.930 24 F -0.105 7.105 25 C -0.175 4.175 26 H 0.050 0.950 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.229 0.771 33 H 0.135 0.865 34 H 0.133 0.867 35 H 0.164 0.836 36 H 0.168 0.832 37 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -16.359 6.641 -12.026 21.362 hybrid contribution 1.083 0.324 -1.207 1.654 sum -15.276 6.965 -13.233 21.377 Atomic orbital electron populations 1.21909 0.97323 0.99037 1.02005 1.22101 0.93721 0.99308 1.01418 1.19215 0.95669 0.89108 0.82322 0.93013 1.20983 0.88494 1.52676 0.95046 0.90284 1.24922 0.94891 0.93519 0.98904 1.69872 1.09651 1.48200 1.24523 0.86926 0.81291 0.79577 0.82368 1.19793 1.18209 1.21113 1.46530 1.13759 1.55378 1.18562 1.19385 0.83514 0.79669 0.87334 1.90726 1.50473 1.59564 1.40473 1.24077 0.99056 1.05029 1.03002 1.86381 1.15511 1.65438 1.07979 1.22192 0.96585 1.01321 0.99541 1.20674 0.96116 0.97462 0.96642 1.21012 0.98822 1.00360 0.92197 1.17627 0.94734 1.01753 0.83109 1.91527 1.95133 1.82908 1.41316 1.17525 0.85786 1.01924 0.87740 1.91549 1.61033 1.94600 1.63303 1.21128 1.00939 1.03749 0.91720 0.94951 0.93016 0.93249 0.92911 0.91917 0.92115 0.77126 0.86511 0.86662 0.83559 0.83191 0.83536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.74 8.53 37.16 0.32 -2.42 16 2 C -0.13 -2.59 5.54 -26.73 -0.15 -2.74 16 3 C 0.24 5.29 1.82 -69.08 -0.13 5.16 16 4 H 0.05 1.26 4.92 -51.93 -0.26 1.01 16 5 C -0.53 -13.65 9.05 -34.44 -0.31 -13.96 16 6 H 0.08 2.13 8.06 -52.49 -0.42 1.71 16 7 C 0.08 2.23 5.47 -17.82 -0.10 2.13 16 8 N -0.89 -25.38 13.96 55.43 0.77 -24.61 16 9 Si 0.87 20.80 26.69 -169.99 -4.54 16.26 16 10 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.26 -6.01 6.88 56.52 0.39 -5.62 16 12 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 13 N -0.69 -12.47 5.03 -54.93 -0.28 -12.74 16 14 C 0.52 8.69 6.45 -10.98 -0.07 8.62 16 15 O -0.53 -10.74 13.00 5.55 0.07 -10.66 16 16 C -0.16 -1.89 4.82 36.00 0.17 -1.71 16 17 S 0.00 0.00 21.06 -107.50 -2.26 -2.26 16 18 C -0.08 -0.82 6.11 -39.07 -0.24 -1.05 16 19 C -0.08 -0.70 9.79 -39.36 -0.39 -1.08 16 20 C -0.10 -0.80 10.02 -39.55 -0.40 -1.19 16 21 C 0.05 0.50 7.30 -39.35 -0.29 0.22 16 22 F -0.13 -1.39 17.18 2.25 0.04 -1.36 16 23 C 0.09 0.97 7.30 -39.39 -0.29 0.68 16 24 F -0.13 -1.47 17.18 2.25 0.04 -1.43 16 25 C -0.15 -1.47 9.34 -39.31 -0.37 -1.83 16 26 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.05 1.04 7.88 -51.93 -0.41 0.63 16 28 H 0.05 0.91 5.63 -51.93 -0.29 0.62 16 29 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.06 1.34 7.90 -51.93 -0.41 0.93 16 31 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 32 H 0.40 6.12 8.59 -40.82 -0.35 5.77 16 33 H 0.12 1.16 7.73 -51.92 -0.40 0.76 16 34 H 0.12 1.08 7.76 -51.92 -0.40 0.68 16 35 H 0.15 0.94 8.06 -52.48 -0.42 0.51 16 36 H 0.15 0.75 8.06 -52.49 -0.42 0.33 16 37 H 0.15 1.25 5.87 -52.49 -0.31 0.94 16 LS Contribution 331.78 15.07 5.00 5.00 Total: -1.00 -30.07 331.78 -7.47 -37.54 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -4.09 Total: 3.44 kcal Atomic # 6 Polarization: -6.95 SS G_CDS: -2.23 Total: -9.17 kcal Atomic # 7 Polarization: -37.85 SS G_CDS: 0.50 Total: -37.35 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: 0.07 Total: -10.66 kcal Atomic # 9 Polarization: -2.86 SS G_CDS: 0.08 Total: -2.78 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -4.54 Total: 16.26 kcal Atomic # 16 Polarization: 0.00 SS G_CDS: -2.26 Total: -2.26 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.07 -7.47 -37.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183844973.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.872 kcal (2) G-P(sol) polarization free energy of solvation -30.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds