Wall clock time and date at job start Tue Mar 31 2020 10:47:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47072 * 2 1 4 4 H 1.09001 * 109.46995 * 54.34967 * 3 2 1 5 5 C 1.50703 * 109.47158 * 174.35511 * 3 2 1 6 6 H 1.07996 * 120.00052 * 87.46654 * 5 3 2 7 7 C 1.37877 * 119.99694 * 267.46526 * 5 3 2 8 8 N 1.31513 * 120.00011 * 176.07000 * 7 5 3 9 9 Si 1.86800 * 120.00176 * 356.06588 * 7 5 3 10 10 H 1.48503 * 109.47284 * 275.08677 * 9 7 5 11 11 H 1.48503 * 109.47330 * 35.09078 * 9 7 5 12 12 H 1.48500 * 109.47245 * 155.08920 * 9 7 5 13 13 N 1.46500 * 109.47016 * 294.35292 * 3 2 1 14 14 C 1.34780 * 119.99800 * 85.00153 * 13 3 2 15 15 O 1.21285 * 120.00088 * 359.97438 * 14 13 3 16 16 C 1.50699 * 120.00031 * 180.02562 * 14 13 3 17 17 S 1.81395 * 109.47339 * 179.97438 * 16 14 13 18 18 C 1.76202 * 103.00227 * 179.97438 * 17 16 14 19 19 C 1.38950 * 120.04881 * 179.97438 * 18 17 16 20 20 C 1.38119 * 119.99473 * 179.97438 * 19 18 17 21 21 C 1.38430 * 120.07467 * 0.02562 * 20 19 18 22 22 F 1.35101 * 119.95376 * 179.97438 * 21 20 19 23 23 C 1.38676 * 120.09035 * 359.97438 * 21 20 19 24 24 F 1.35101 * 119.99591 * 180.02562 * 23 21 20 25 25 C 1.38310 * 120.01350 * 359.75319 * 23 21 20 26 26 H 1.09004 * 109.47192 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47467 * 300.00157 * 1 2 3 28 28 H 1.08999 * 109.47294 * 60.00338 * 1 2 3 29 29 H 1.08996 * 109.47467 * 239.99843 * 2 1 3 30 30 H 1.09004 * 109.46856 * 119.99736 * 2 1 3 31 31 H 0.97000 * 120.00194 * 180.02562 * 8 7 5 32 32 H 0.96999 * 120.00500 * 265.00098 * 13 3 2 33 33 H 1.09004 * 109.46977 * 300.00150 * 16 14 13 34 34 H 1.09007 * 109.47227 * 59.99745 * 16 14 13 35 35 H 1.08006 * 120.00695 * 0.02562 * 19 18 17 36 36 H 1.07993 * 119.96209 * 180.02562 * 20 19 18 37 37 H 1.07998 * 120.04547 * 180.27429 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5964 1.9847 0.8351 5 6 3.5405 1.4448 0.1398 6 1 4.1648 1.3737 -0.7386 7 6 4.1163 1.5378 1.3891 8 7 5.4229 1.4621 1.5182 9 14 3.0406 1.7713 2.8983 10 1 2.7491 3.2161 3.0797 11 1 1.7675 1.0282 2.7186 12 1 3.7500 1.2553 4.0965 13 7 1.6658 2.0927 -1.2583 14 6 0.4497 2.6592 -1.3885 15 8 -0.3349 2.6302 -0.4641 16 6 0.0645 3.3276 -2.6831 17 16 -1.6197 3.9871 -2.5453 18 6 -1.8893 4.7188 -4.1254 19 6 -3.0995 5.3408 -4.4067 20 6 -3.3095 5.9145 -5.6455 21 6 -2.3155 5.8702 -6.6080 22 9 -2.5237 6.4317 -7.8190 23 6 -1.1064 5.2503 -6.3307 24 9 -0.1375 5.2087 -7.2713 25 6 -0.8901 4.6796 -5.0896 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 5.8280 1.5271 2.3972 32 1 2.2931 2.1156 -1.9978 33 1 0.7582 4.1421 -2.8919 34 1 0.1042 2.5998 -3.4936 35 1 -3.8758 5.3764 -3.6566 36 1 -4.2502 6.3981 -5.8634 37 1 0.0530 4.2006 -4.8716 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183844973.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:44 Heat of formation + Delta-G solvation = -124.193904 kcal Electronic energy + Delta-G solvation = -22935.997252 eV Core-core repulsion = 19053.693806 eV Total energy + Delta-G solvation = -3882.303447 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.085 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.55216 -49.62933 -40.78020 -39.78644 -37.02386 -34.42727 -33.49340 -32.39232 -31.43956 -30.74534 -29.08613 -24.74827 -24.41833 -24.07637 -22.32327 -21.30916 -19.78194 -19.12735 -18.62709 -18.20568 -17.63396 -17.55231 -17.39969 -16.98441 -16.68150 -16.05290 -15.98876 -15.73211 -15.35858 -15.16145 -14.90170 -14.78474 -14.58015 -14.04831 -13.80669 -13.78536 -13.66483 -13.32973 -13.23406 -12.91132 -12.58232 -12.38868 -12.35133 -11.86434 -11.67869 -11.35226 -11.21546 -10.88977 -10.82946 -10.68343 -10.12736 -9.76768 -8.48441 -8.39318 -6.45293 -0.29185 -0.11074 0.17559 1.20916 1.29532 1.34783 1.44434 1.65959 2.19065 2.26690 2.39518 2.76207 3.01445 3.24285 3.50305 3.77487 3.87096 3.96093 3.97234 4.20365 4.32798 4.35297 4.42910 4.55841 4.63533 4.78643 4.83190 4.92422 4.99238 5.12753 5.24181 5.27417 5.40824 5.56823 5.59876 5.72685 6.10485 6.60312 6.81600 7.19828 7.38157 8.75594 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.024473 B = 0.002821 C = 0.002686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.839624 B = 9923.088057 C =10422.974760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.124 4.124 3 C 0.245 3.755 4 H 0.031 0.969 5 C -0.527 4.527 6 H 0.057 0.943 7 C 0.033 3.967 8 N -0.931 5.931 9 Si 0.923 3.077 10 H -0.275 1.275 11 H -0.251 1.251 12 H -0.281 1.281 13 N -0.696 5.696 14 C 0.518 3.482 15 O -0.567 6.567 16 C -0.149 4.149 17 S -0.030 6.030 18 C -0.084 4.084 19 C -0.078 4.078 20 C -0.091 4.091 21 C 0.042 3.958 22 F -0.138 7.138 23 C 0.073 3.927 24 F -0.138 7.138 25 C -0.150 4.150 26 H 0.055 0.945 27 H 0.033 0.967 28 H 0.052 0.948 29 H 0.063 0.937 30 H 0.049 0.951 31 H 0.270 0.730 32 H 0.408 0.592 33 H 0.139 0.861 34 H 0.144 0.856 35 H 0.167 0.833 36 H 0.181 0.819 37 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.538 7.199 -14.821 24.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.164 4.164 3 C 0.141 3.859 4 H 0.049 0.951 5 C -0.565 4.565 6 H 0.076 0.924 7 C -0.167 4.167 8 N -0.570 5.570 9 Si 0.748 3.252 10 H -0.200 1.200 11 H -0.175 1.175 12 H -0.207 1.207 13 N -0.345 5.345 14 C 0.303 3.697 15 O -0.447 6.447 16 C -0.300 4.300 17 S 0.215 5.785 18 C -0.198 4.198 19 C -0.102 4.102 20 C -0.111 4.111 21 C 0.019 3.981 22 F -0.117 7.117 23 C 0.051 3.949 24 F -0.116 7.116 25 C -0.175 4.175 26 H 0.074 0.926 27 H 0.052 0.948 28 H 0.071 0.929 29 H 0.082 0.918 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.243 0.757 33 H 0.157 0.843 34 H 0.162 0.838 35 H 0.185 0.815 36 H 0.199 0.801 37 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -18.536 7.036 -13.027 23.723 hybrid contribution 1.695 0.246 -1.024 1.995 sum -16.842 7.282 -14.051 23.110 Atomic orbital electron populations 1.21777 0.95678 1.00373 1.01307 1.22011 0.95084 0.97934 1.01327 1.18897 0.93168 0.90269 0.83608 0.95086 1.21221 0.90327 1.50881 0.94058 0.92433 1.25580 0.95691 0.93894 1.01543 1.69975 1.11173 1.50669 1.25141 0.86114 0.80117 0.79259 0.79746 1.20044 1.17489 1.20654 1.46211 1.14962 1.55764 1.17598 1.20000 0.82301 0.78739 0.88658 1.90716 1.51255 1.60514 1.42221 1.23936 0.99458 1.06065 1.00522 1.86501 1.15667 1.66398 1.09888 1.22105 0.97399 1.01984 0.98290 1.20983 0.95907 0.96167 0.97164 1.21304 0.99306 0.99363 0.91137 1.17913 0.95123 1.01804 0.83298 1.91509 1.95173 1.83061 1.41912 1.17723 0.86059 1.03082 0.87994 1.91517 1.61548 1.94813 1.63748 1.21225 1.01421 1.03504 0.91329 0.92551 0.94758 0.92867 0.91807 0.93251 0.92080 0.75652 0.84334 0.83769 0.81518 0.80146 0.82498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.80 8.53 71.98 0.61 -4.19 16 2 C -0.12 -4.95 5.54 30.59 0.17 -4.79 16 3 C 0.24 10.67 1.82 44.25 0.08 10.75 16 4 H 0.03 1.50 4.92 -2.39 -0.01 1.49 16 5 C -0.53 -27.10 9.05 25.60 0.23 -26.87 16 6 H 0.06 3.15 8.06 -2.91 -0.02 3.13 16 7 C 0.03 1.82 5.47 84.65 0.46 2.28 16 8 N -0.93 -54.36 13.96 21.45 0.30 -54.06 16 9 Si 0.92 43.25 26.69 68.60 1.83 45.08 16 10 H -0.27 -12.87 7.11 99.48 0.71 -12.16 16 11 H -0.25 -11.36 6.88 99.48 0.68 -10.68 16 12 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 13 N -0.70 -24.09 5.03 -446.08 -2.24 -26.33 16 14 C 0.52 16.47 6.45 87.66 0.57 17.03 16 15 O -0.57 -22.12 13.00 -3.05 -0.04 -22.15 16 16 C -0.15 -3.12 4.82 71.24 0.34 -2.78 16 17 S -0.03 -0.66 21.06 -56.49 -1.19 -1.85 16 18 C -0.08 -1.45 6.11 22.60 0.14 -1.31 16 19 C -0.08 -1.04 9.79 22.41 0.22 -0.82 16 20 C -0.09 -1.11 10.02 22.29 0.22 -0.89 16 21 C 0.04 0.74 7.30 22.42 0.16 0.90 16 22 F -0.14 -2.75 17.18 44.97 0.77 -1.97 16 23 C 0.07 1.43 7.30 22.39 0.16 1.59 16 24 F -0.14 -3.08 17.18 44.97 0.77 -2.30 16 25 C -0.15 -2.59 9.34 22.45 0.21 -2.38 16 26 H 0.06 1.73 8.14 -2.38 -0.02 1.71 16 27 H 0.03 1.33 7.88 -2.39 -0.02 1.31 16 28 H 0.05 1.85 5.63 -2.39 -0.01 1.84 16 29 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 30 H 0.05 2.07 7.90 -2.38 -0.02 2.06 16 31 H 0.27 14.87 8.31 -92.71 -0.77 14.10 16 32 H 0.41 12.04 8.59 -92.71 -0.80 11.24 16 33 H 0.14 2.33 7.73 -2.39 -0.02 2.31 16 34 H 0.14 2.21 7.76 -2.39 -0.02 2.19 16 35 H 0.17 1.53 8.06 -2.91 -0.02 1.51 16 36 H 0.18 1.08 8.06 -2.91 -0.02 1.05 16 37 H 0.16 2.26 5.87 -2.91 -0.02 2.25 16 Total: -1.00 -65.60 331.78 4.09 -61.51 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: 0.31 Total: 13.56 kcal Atomic # 6 Polarization: -15.05 SS G_CDS: 3.58 Total: -11.47 kcal Atomic # 7 Polarization: -78.45 SS G_CDS: -1.94 Total: -80.40 kcal Atomic # 8 Polarization: -22.12 SS G_CDS: -0.04 Total: -22.15 kcal Atomic # 9 Polarization: -5.82 SS G_CDS: 1.54 Total: -4.28 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 1.83 Total: 45.08 kcal Atomic # 16 Polarization: -0.66 SS G_CDS: -1.19 Total: -1.85 kcal Total: -65.60 4.09 -61.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183844973.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.688 kcal (2) G-P(sol) polarization free energy of solvation -65.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds