Wall clock time and date at job start Tue Mar 31 2020 10:47:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47350 * 2 1 4 4 H 1.09001 * 109.46773 * 305.00267 * 3 2 1 5 5 C 1.50698 * 109.47432 * 185.00212 * 3 2 1 6 6 H 1.08003 * 119.99850 * 239.99733 * 5 3 2 7 7 C 1.37873 * 120.00104 * 59.99975 * 5 3 2 8 8 N 1.31516 * 120.00275 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00065 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47295 * 89.99526 * 9 7 5 11 11 H 1.48499 * 109.47396 * 209.99849 * 9 7 5 12 12 H 1.48505 * 109.47095 * 329.99756 * 9 7 5 13 13 N 1.46500 * 109.47146 * 64.99779 * 3 2 1 14 14 C 1.34779 * 120.00169 * 275.00181 * 13 3 2 15 15 O 1.21282 * 119.99922 * 0.02562 * 14 13 3 16 16 C 1.50699 * 120.00037 * 180.02562 * 14 13 3 17 17 S 1.81399 * 109.47054 * 180.02562 * 16 14 13 18 18 C 1.76197 * 103.00045 * 180.02562 * 17 16 14 19 19 C 1.38962 * 120.04303 * 180.02562 * 18 17 16 20 20 C 1.38116 * 119.98378 * 179.97438 * 19 18 17 21 21 C 1.38425 * 120.08394 * 359.97438 * 20 19 18 22 22 F 1.35100 * 119.95945 * 179.97438 * 21 20 19 23 23 C 1.38673 * 120.09109 * 0.02562 * 21 20 19 24 24 F 1.35096 * 120.00065 * 180.02562 * 23 21 20 25 25 C 1.38313 * 120.00846 * 359.74657 * 23 21 20 26 26 H 1.08996 * 109.47181 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.46635 * 300.00068 * 1 2 3 28 28 H 1.08995 * 109.47240 * 60.00201 * 1 2 3 29 29 H 1.09001 * 109.47485 * 240.00138 * 2 1 3 30 30 H 1.09007 * 109.47568 * 119.99535 * 2 1 3 31 31 H 0.96999 * 120.00152 * 180.02562 * 8 7 5 32 32 H 0.96996 * 119.99986 * 95.00778 * 13 3 2 33 33 H 1.09000 * 109.47247 * 60.00371 * 16 14 13 34 34 H 1.09001 * 109.47358 * 299.99798 * 16 14 13 35 35 H 1.07994 * 120.01070 * 359.97438 * 19 18 17 36 36 H 1.08008 * 119.95567 * 180.02562 * 20 19 18 37 37 H 1.08006 * 120.04351 * 180.28292 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1432 0.8785 -1.2280 8 7 3.4062 0.3366 -2.1729 9 14 6.0049 0.8801 -1.3812 10 1 6.5539 -0.3519 -0.7598 11 1 6.3835 0.9215 -2.8165 12 1 6.5575 2.0721 -0.6890 13 7 1.6524 2.0975 1.2518 14 6 0.4351 2.6645 1.3669 15 8 -0.3396 2.6320 0.4344 16 6 0.0367 3.3387 2.6544 17 16 -1.6461 3.9975 2.4964 18 6 -1.9319 4.7365 4.0701 19 6 -3.1451 5.3597 4.3361 20 6 -3.3680 5.9381 5.5703 21 6 -2.3845 5.8974 6.5435 22 9 -2.6050 6.4644 7.7498 23 6 -1.1725 5.2764 6.2817 24 9 -0.2141 5.2373 7.2329 25 6 -0.9470 4.6918 5.0486 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8901 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8901 31 1 3.8293 -0.0618 -2.9495 32 1 2.2719 2.1233 1.9977 33 1 0.7281 4.1543 2.8666 34 1 0.0680 2.6147 3.4686 35 1 -3.9135 5.3918 3.5779 36 1 -4.3114 6.4219 5.7767 37 1 -0.0050 4.2040 4.8456 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183844991.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:47 Heat of formation + Delta-G solvation = -106.053938 kcal Electronic energy + Delta-G solvation = -22861.334562 eV Core-core repulsion = 18979.817723 eV Total energy + Delta-G solvation = -3881.516839 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.085 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.74069 -48.81283 -39.17482 -39.05191 -35.21878 -32.61157 -31.81112 -31.18192 -30.69130 -29.43348 -26.82547 -23.71760 -23.40000 -23.01756 -20.68712 -19.51727 -18.79682 -17.87641 -17.53900 -17.04373 -16.59464 -16.25111 -16.03572 -15.45711 -15.28786 -15.22348 -14.88226 -14.61067 -14.32311 -14.13777 -13.52459 -13.29461 -13.09544 -12.81241 -12.74022 -12.48419 -11.91123 -11.66681 -11.53223 -11.31867 -11.05704 -10.89105 -10.44047 -10.39910 -10.26312 -9.91103 -9.72352 -9.38530 -9.31416 -9.13580 -8.58934 -8.00783 -7.57893 -6.19958 -4.30146 0.46399 0.59673 1.11857 2.12443 2.90703 3.09330 3.19542 3.27038 3.28542 3.48244 3.84602 4.01254 4.17461 4.29156 4.55051 4.66013 4.91041 4.99821 5.05699 5.11837 5.29026 5.37567 5.44543 5.58461 5.68813 6.32096 6.32375 6.37580 6.57442 6.94954 7.09638 7.23208 7.30369 7.51307 7.61438 7.79478 8.08653 8.46212 8.65048 8.91357 9.37167 10.85295 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.023541 B = 0.002693 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.118194 B =10396.033403 C =11210.220160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.272 3.728 4 H 0.052 0.948 5 C -0.537 4.537 6 H 0.061 0.939 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.902 3.098 10 H -0.279 1.279 11 H -0.284 1.284 12 H -0.274 1.274 13 N -0.699 5.699 14 C 0.519 3.481 15 O -0.529 6.529 16 C -0.160 4.160 17 S 0.003 5.997 18 C -0.083 4.083 19 C -0.085 4.085 20 C -0.103 4.103 21 C 0.050 3.950 22 F -0.131 7.131 23 C 0.092 3.908 24 F -0.127 7.127 25 C -0.150 4.150 26 H 0.024 0.976 27 H 0.037 0.963 28 H 0.050 0.950 29 H 0.101 0.899 30 H 0.032 0.968 31 H 0.265 0.735 32 H 0.390 0.610 33 H 0.114 0.886 34 H 0.114 0.886 35 H 0.147 0.853 36 H 0.150 0.850 37 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.733 8.611 14.896 20.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.167 4.167 3 C 0.170 3.830 4 H 0.069 0.931 5 C -0.575 4.575 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.729 3.271 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.198 1.198 13 N -0.347 5.347 14 C 0.301 3.699 15 O -0.407 6.407 16 C -0.312 4.312 17 S 0.250 5.750 18 C -0.197 4.197 19 C -0.109 4.109 20 C -0.124 4.124 21 C 0.027 3.973 22 F -0.109 7.109 23 C 0.070 3.930 24 F -0.105 7.105 25 C -0.176 4.176 26 H 0.043 0.957 27 H 0.056 0.944 28 H 0.070 0.930 29 H 0.119 0.881 30 H 0.050 0.950 31 H 0.076 0.924 32 H 0.223 0.777 33 H 0.133 0.867 34 H 0.132 0.868 35 H 0.165 0.835 36 H 0.168 0.832 37 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -11.861 8.335 12.984 19.462 hybrid contribution 2.425 0.124 1.961 3.121 sum -9.436 8.459 14.945 19.594 Atomic orbital electron populations 1.21843 0.98240 0.98237 1.01205 1.21953 0.92675 0.99654 1.02447 1.18867 0.94373 0.89229 0.80527 0.93061 1.21201 0.90531 1.39377 1.06436 0.92036 1.24880 0.98697 0.94706 0.95316 1.69886 1.35220 1.37336 1.09359 0.86444 0.84710 0.78479 0.77465 1.20508 1.21009 1.19844 1.46446 1.13913 1.55466 1.18919 1.19269 0.83582 0.79854 0.87239 1.90736 1.50967 1.59421 1.39604 1.24086 0.98921 1.04885 1.03290 1.86417 1.15675 1.64985 1.07954 1.22225 0.96655 1.01225 0.99547 1.20680 0.96005 0.97459 0.96762 1.21011 0.98912 1.00351 0.92109 1.17619 0.94677 1.01796 0.83225 1.91524 1.94920 1.82710 1.41771 1.17524 0.86002 1.01890 0.87597 1.91543 1.61806 1.94641 1.62555 1.21124 1.01123 1.03622 0.91731 0.95696 0.94387 0.93044 0.88132 0.94959 0.92447 0.77737 0.86734 0.86826 0.83536 0.83204 0.83581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.94 8.51 37.16 0.32 -2.62 16 2 C -0.13 -2.98 5.45 -26.73 -0.15 -3.12 16 3 C 0.27 6.44 2.24 -69.08 -0.15 6.29 16 4 H 0.05 1.42 7.58 -51.93 -0.39 1.03 16 5 C -0.54 -13.54 8.73 -34.44 -0.30 -13.84 16 6 H 0.06 1.48 7.74 -52.48 -0.41 1.07 16 7 C 0.07 1.75 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -23.93 11.29 55.43 0.63 -23.31 16 9 Si 0.90 20.00 29.54 -169.99 -5.02 14.98 16 10 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 11 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 12 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 13 N -0.70 -13.15 5.02 -54.93 -0.28 -13.42 16 14 C 0.52 9.16 6.42 -10.99 -0.07 9.08 16 15 O -0.53 -11.28 13.00 5.56 0.07 -11.21 16 16 C -0.16 -1.98 4.82 36.01 0.17 -1.81 16 17 S 0.00 0.04 21.06 -107.50 -2.26 -2.23 16 18 C -0.08 -0.84 6.11 -39.07 -0.24 -1.08 16 19 C -0.08 -0.72 9.79 -39.36 -0.39 -1.10 16 20 C -0.10 -0.82 10.01 -39.56 -0.40 -1.21 16 21 C 0.05 0.50 7.30 -39.35 -0.29 0.22 16 22 F -0.13 -1.42 17.18 2.25 0.04 -1.38 16 23 C 0.09 0.98 7.30 -39.39 -0.29 0.70 16 24 F -0.13 -1.49 17.18 2.25 0.04 -1.45 16 25 C -0.15 -1.51 9.34 -39.31 -0.37 -1.88 16 26 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.04 0.77 5.64 -51.93 -0.29 0.48 16 28 H 0.05 1.17 7.85 -51.93 -0.41 0.77 16 29 H 0.10 2.61 5.95 -51.93 -0.31 2.30 16 30 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 32 H 0.39 6.21 8.54 -40.82 -0.35 5.86 16 33 H 0.11 1.17 7.76 -51.92 -0.40 0.77 16 34 H 0.11 1.14 7.74 -51.92 -0.40 0.74 16 35 H 0.15 0.98 8.06 -52.49 -0.42 0.56 16 36 H 0.15 0.78 8.06 -52.48 -0.42 0.36 16 37 H 0.15 1.28 5.88 -52.48 -0.31 0.97 16 LS Contribution 332.28 15.07 5.01 5.01 Total: -1.00 -29.10 332.28 -8.11 -37.21 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -4.10 Total: 4.52 kcal Atomic # 6 Polarization: -6.49 SS G_CDS: -2.24 Total: -8.72 kcal Atomic # 7 Polarization: -37.08 SS G_CDS: 0.35 Total: -36.73 kcal Atomic # 8 Polarization: -11.28 SS G_CDS: 0.07 Total: -11.21 kcal Atomic # 9 Polarization: -2.90 SS G_CDS: 0.08 Total: -2.82 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.98 kcal Atomic # 16 Polarization: 0.04 SS G_CDS: -2.26 Total: -2.23 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -29.10 -8.11 -37.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183844991.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.842 kcal (2) G-P(sol) polarization free energy of solvation -29.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds