Wall clock time and date at job start Tue Mar 31 2020 10:47:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47350 * 2 1 4 4 H 1.09001 * 109.46773 * 305.00267 * 3 2 1 5 5 C 1.50698 * 109.47432 * 185.00212 * 3 2 1 6 6 H 1.08003 * 119.99850 * 239.99733 * 5 3 2 7 7 C 1.37873 * 120.00104 * 59.99975 * 5 3 2 8 8 N 1.31516 * 120.00275 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00065 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47295 * 89.99526 * 9 7 5 11 11 H 1.48499 * 109.47396 * 209.99849 * 9 7 5 12 12 H 1.48505 * 109.47095 * 329.99756 * 9 7 5 13 13 N 1.46500 * 109.47146 * 64.99779 * 3 2 1 14 14 C 1.34779 * 120.00169 * 275.00181 * 13 3 2 15 15 O 1.21282 * 119.99922 * 0.02562 * 14 13 3 16 16 C 1.50699 * 120.00037 * 180.02562 * 14 13 3 17 17 S 1.81399 * 109.47054 * 180.02562 * 16 14 13 18 18 C 1.76197 * 103.00045 * 180.02562 * 17 16 14 19 19 C 1.38962 * 120.04303 * 180.02562 * 18 17 16 20 20 C 1.38116 * 119.98378 * 179.97438 * 19 18 17 21 21 C 1.38425 * 120.08394 * 359.97438 * 20 19 18 22 22 F 1.35100 * 119.95945 * 179.97438 * 21 20 19 23 23 C 1.38673 * 120.09109 * 0.02562 * 21 20 19 24 24 F 1.35096 * 120.00065 * 180.02562 * 23 21 20 25 25 C 1.38313 * 120.00846 * 359.74657 * 23 21 20 26 26 H 1.08996 * 109.47181 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.46635 * 300.00068 * 1 2 3 28 28 H 1.08995 * 109.47240 * 60.00201 * 1 2 3 29 29 H 1.09001 * 109.47485 * 240.00138 * 2 1 3 30 30 H 1.09007 * 109.47568 * 119.99535 * 2 1 3 31 31 H 0.96999 * 120.00152 * 180.02562 * 8 7 5 32 32 H 0.96996 * 119.99986 * 95.00778 * 13 3 2 33 33 H 1.09000 * 109.47247 * 60.00371 * 16 14 13 34 34 H 1.09001 * 109.47358 * 299.99798 * 16 14 13 35 35 H 1.07994 * 120.01070 * 359.97438 * 19 18 17 36 36 H 1.08008 * 119.95567 * 180.02562 * 20 19 18 37 37 H 1.08006 * 120.04351 * 180.28292 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1432 0.8785 -1.2280 8 7 3.4062 0.3366 -2.1729 9 14 6.0049 0.8801 -1.3812 10 1 6.5539 -0.3519 -0.7598 11 1 6.3835 0.9215 -2.8165 12 1 6.5575 2.0721 -0.6890 13 7 1.6524 2.0975 1.2518 14 6 0.4351 2.6645 1.3669 15 8 -0.3396 2.6320 0.4344 16 6 0.0367 3.3387 2.6544 17 16 -1.6461 3.9975 2.4964 18 6 -1.9319 4.7365 4.0701 19 6 -3.1451 5.3597 4.3361 20 6 -3.3680 5.9381 5.5703 21 6 -2.3845 5.8974 6.5435 22 9 -2.6050 6.4644 7.7498 23 6 -1.1725 5.2764 6.2817 24 9 -0.2141 5.2373 7.2329 25 6 -0.9470 4.6918 5.0486 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8901 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8901 31 1 3.8293 -0.0618 -2.9495 32 1 2.2719 2.1233 1.9977 33 1 0.7281 4.1543 2.8666 34 1 0.0680 2.6147 3.4686 35 1 -3.9135 5.3918 3.5779 36 1 -4.3114 6.4219 5.7767 37 1 -0.0050 4.2040 4.8456 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183844991.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:46 Heat of formation + Delta-G solvation = -122.345830 kcal Electronic energy + Delta-G solvation = -22862.041031 eV Core-core repulsion = 18979.817723 eV Total energy + Delta-G solvation = -3882.223308 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.085 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.54855 -49.62497 -40.69592 -39.78215 -36.97876 -34.36147 -33.15754 -32.35440 -31.43383 -30.69131 -28.63098 -25.02278 -24.41802 -24.07175 -22.28008 -21.19346 -19.72836 -18.91112 -18.57261 -18.12299 -17.63182 -17.39553 -17.25831 -16.92072 -16.70236 -16.04838 -16.03382 -15.73299 -15.30478 -15.15327 -14.83461 -14.58540 -14.51966 -14.02799 -13.74047 -13.53951 -13.35659 -13.15791 -13.14399 -12.88038 -12.66517 -12.38647 -12.17246 -12.04099 -11.58121 -11.33808 -11.05593 -10.83183 -10.67951 -10.52859 -10.12295 -9.68153 -8.48633 -8.16378 -6.33444 -0.28642 -0.10612 0.18459 1.22271 1.44992 1.46099 1.55726 1.71574 2.19511 2.34050 2.56627 2.76913 3.13626 3.24549 3.50737 3.81871 3.88111 3.96591 3.97954 4.20384 4.35684 4.50969 4.58800 4.63651 4.77210 4.78953 4.92912 4.99950 5.07321 5.27482 5.43878 5.55113 5.60077 5.60356 5.79482 5.89971 6.17124 6.74466 6.88795 7.32415 7.50262 8.88775 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.023541 B = 0.002693 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.118194 B =10396.033403 C =11210.220160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.122 4.122 3 C 0.280 3.720 4 H 0.002 0.998 5 C -0.548 4.548 6 H 0.073 0.927 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 0.967 3.033 10 H -0.273 1.273 11 H -0.288 1.288 12 H -0.265 1.265 13 N -0.698 5.698 14 C 0.515 3.485 15 O -0.569 6.569 16 C -0.146 4.146 17 S -0.034 6.034 18 C -0.084 4.084 19 C -0.079 4.079 20 C -0.090 4.090 21 C 0.042 3.958 22 F -0.138 7.138 23 C 0.074 3.926 24 F -0.137 7.137 25 C -0.149 4.149 26 H 0.044 0.956 27 H 0.046 0.954 28 H 0.026 0.974 29 H 0.070 0.930 30 H 0.042 0.958 31 H 0.265 0.735 32 H 0.407 0.593 33 H 0.141 0.859 34 H 0.143 0.857 35 H 0.166 0.834 36 H 0.181 0.819 37 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.816 9.291 16.850 22.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.161 4.161 3 C 0.176 3.824 4 H 0.019 0.981 5 C -0.586 4.586 6 H 0.091 0.909 7 C -0.184 4.184 8 N -0.553 5.553 9 Si 0.792 3.208 10 H -0.198 1.198 11 H -0.214 1.214 12 H -0.189 1.189 13 N -0.347 5.347 14 C 0.300 3.700 15 O -0.450 6.450 16 C -0.297 4.297 17 S 0.212 5.788 18 C -0.197 4.197 19 C -0.103 4.103 20 C -0.111 4.111 21 C 0.019 3.981 22 F -0.116 7.116 23 C 0.052 3.948 24 F -0.116 7.116 25 C -0.175 4.175 26 H 0.063 0.937 27 H 0.065 0.935 28 H 0.045 0.955 29 H 0.089 0.911 30 H 0.061 0.939 31 H 0.074 0.926 32 H 0.242 0.758 33 H 0.159 0.841 34 H 0.161 0.839 35 H 0.184 0.816 36 H 0.199 0.801 37 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -11.940 9.036 14.996 21.192 hybrid contribution 2.356 -0.028 1.381 2.731 sum -9.584 9.007 16.377 21.005 Atomic orbital electron populations 1.21680 0.96850 0.99200 1.00376 1.21798 0.93818 0.99129 1.01362 1.18390 0.93584 0.89184 0.81193 0.98055 1.21578 0.91463 1.38898 1.06654 0.90910 1.25731 1.03071 0.94468 0.95106 1.70040 1.36995 1.38310 1.09907 0.85415 0.79421 0.78833 0.77090 1.19810 1.21439 1.18891 1.46154 1.15065 1.55646 1.17874 1.20015 0.82422 0.78948 0.88617 1.90727 1.51960 1.60595 1.41670 1.23920 0.99319 1.05953 1.00487 1.86583 1.15998 1.66083 1.10164 1.22110 0.97544 1.01936 0.98157 1.20981 0.95750 0.96213 0.97333 1.21298 0.99450 0.99345 0.90990 1.17898 0.95027 1.01776 0.83418 1.91509 1.94955 1.82844 1.42316 1.17702 0.86286 1.02964 0.87812 1.91515 1.62265 1.94835 1.62953 1.21221 1.01574 1.03348 0.91321 0.93718 0.93506 0.95504 0.91114 0.93948 0.92621 0.75812 0.84148 0.83924 0.81612 0.80133 0.82464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.31 8.51 71.98 0.61 -4.69 16 2 C -0.12 -5.74 5.45 30.59 0.17 -5.57 16 3 C 0.28 13.53 2.24 44.25 0.10 13.63 16 4 H 0.00 0.09 7.58 -2.39 -0.02 0.07 16 5 C -0.55 -27.64 8.73 25.60 0.22 -27.42 16 6 H 0.07 3.42 7.74 -2.91 -0.02 3.39 16 7 C 0.02 0.86 5.29 84.65 0.45 1.31 16 8 N -0.91 -51.00 11.29 21.45 0.24 -50.76 16 9 Si 0.97 40.91 29.54 68.60 2.03 42.94 16 10 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 11 H -0.29 -12.30 7.11 99.48 0.71 -11.59 16 12 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 13 N -0.70 -25.78 5.02 -446.09 -2.24 -28.02 16 14 C 0.52 17.81 6.42 87.66 0.56 18.37 16 15 O -0.57 -24.59 13.00 -3.04 -0.04 -24.63 16 16 C -0.15 -3.28 4.82 71.24 0.34 -2.94 16 17 S -0.03 -0.80 21.06 -56.49 -1.19 -1.99 16 18 C -0.08 -1.51 6.11 22.60 0.14 -1.38 16 19 C -0.08 -1.11 9.79 22.41 0.22 -0.89 16 20 C -0.09 -1.15 10.01 22.29 0.22 -0.93 16 21 C 0.04 0.75 7.30 22.42 0.16 0.92 16 22 F -0.14 -2.76 17.18 44.97 0.77 -1.98 16 23 C 0.07 1.46 7.30 22.39 0.16 1.62 16 24 F -0.14 -3.05 17.18 44.97 0.77 -2.28 16 25 C -0.15 -2.66 9.34 22.45 0.21 -2.45 16 26 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 27 H 0.05 1.89 5.64 -2.38 -0.01 1.88 16 28 H 0.03 1.24 7.85 -2.39 -0.02 1.23 16 29 H 0.07 3.78 5.95 -2.39 -0.01 3.77 16 30 H 0.04 1.86 8.14 -2.38 -0.02 1.84 16 31 H 0.26 14.05 8.31 -92.71 -0.77 13.28 16 32 H 0.41 12.24 8.54 -92.71 -0.79 11.44 16 33 H 0.14 2.45 7.76 -2.39 -0.02 2.43 16 34 H 0.14 2.40 7.74 -2.39 -0.02 2.38 16 35 H 0.17 1.69 8.06 -2.91 -0.02 1.67 16 36 H 0.18 1.16 8.06 -2.91 -0.02 1.14 16 37 H 0.16 2.32 5.88 -2.91 -0.02 2.30 16 Total: -1.00 -64.93 332.28 4.25 -60.69 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: 0.33 Total: 16.45 kcal Atomic # 6 Polarization: -14.00 SS G_CDS: 3.57 Total: -10.42 kcal Atomic # 7 Polarization: -76.77 SS G_CDS: -2.00 Total: -78.77 kcal Atomic # 8 Polarization: -24.59 SS G_CDS: -0.04 Total: -24.63 kcal Atomic # 9 Polarization: -5.81 SS G_CDS: 1.54 Total: -4.26 kcal Atomic # 14 Polarization: 40.91 SS G_CDS: 2.03 Total: 42.94 kcal Atomic # 16 Polarization: -0.80 SS G_CDS: -1.19 Total: -1.99 kcal Total: -64.93 4.25 -60.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183844991.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.661 kcal (2) G-P(sol) polarization free energy of solvation -64.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds