Wall clock time and date at job start Tue Mar 31 2020 11:09:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35895 * 116.99993 * 2 1 4 4 C 1.38781 * 120.02592 * 0.27562 * 3 2 1 5 5 C 1.38180 * 120.05235 * 180.27161 * 4 3 2 6 6 C 1.38181 * 120.11149 * 359.73100 * 5 4 3 7 7 C 1.38771 * 120.05134 * 359.97438 * 6 5 4 8 8 O 1.35894 * 120.02309 * 180.02562 * 7 6 5 9 9 C 1.42897 * 117.00430 * 359.97438 * 8 7 6 10 10 C 1.38632 * 120.03140 * 179.97438 * 3 2 1 11 11 S 1.76197 * 120.05340 * 0.02562 * 10 3 2 12 12 O 1.42100 * 106.40432 * 156.18588 * 11 10 3 13 13 O 1.42100 * 106.40250 * 23.26061 * 11 10 3 14 14 N 1.65606 * 107.21394 * 269.72409 * 11 10 3 15 15 C 1.46497 * 120.00213 * 64.99953 * 14 11 10 16 16 H 1.09003 * 109.46733 * 335.00276 * 15 14 11 17 17 C 1.53000 * 109.47145 * 94.99840 * 15 14 11 18 18 C 1.50694 * 109.47115 * 214.99914 * 15 14 11 19 19 H 1.08000 * 120.00563 * 359.97438 * 18 15 14 20 20 C 1.37885 * 119.99902 * 180.02562 * 18 15 14 21 21 N 1.31516 * 119.99913 * 359.97438 * 20 18 15 22 22 Si 1.86798 * 119.99766 * 179.97438 * 20 18 15 23 23 H 1.48506 * 109.46985 * 179.97438 * 22 20 18 24 24 H 1.48494 * 109.47276 * 299.99832 * 22 20 18 25 25 H 1.48498 * 109.47150 * 60.00043 * 22 20 18 26 26 H 1.09005 * 109.46548 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47210 * 299.99579 * 1 2 3 28 28 H 1.08996 * 109.47255 * 60.00233 * 1 2 3 29 29 H 1.08000 * 119.97101 * 0.02562 * 4 3 2 30 30 H 1.07999 * 119.94479 * 179.74374 * 5 4 3 31 31 H 1.07991 * 119.97146 * 179.97438 * 6 5 4 32 32 H 1.09011 * 109.46632 * 300.00116 * 9 8 7 33 33 H 1.09000 * 109.47099 * 59.99619 * 9 8 7 34 34 H 1.09002 * 109.47465 * 180.02562 * 9 8 7 35 35 H 0.97006 * 119.99827 * 244.99362 * 14 11 10 36 36 H 1.09007 * 109.47356 * 300.00099 * 17 15 14 37 37 H 1.09000 * 109.47156 * 59.99824 * 17 15 14 38 38 H 1.08997 * 109.47359 * 180.02562 * 17 15 14 39 39 H 0.97001 * 119.99646 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2906 2.3751 0.0058 5 6 1.9173 3.6066 0.0001 6 6 3.2970 3.6822 -0.0057 7 6 4.0567 2.5209 -0.0053 8 8 5.4136 2.5960 -0.0105 9 6 5.9911 3.9031 -0.0168 10 6 3.4303 1.2841 0.0005 11 16 4.3921 -0.1921 0.0005 12 8 5.6563 0.1525 -0.5493 13 8 3.5621 -1.2119 -0.5384 14 7 4.6655 -0.5990 1.5824 15 6 3.5440 -0.9771 2.4458 16 1 2.6257 -0.5300 2.0652 17 6 3.4019 -2.5005 2.4595 18 6 3.8000 -0.4839 3.8466 19 1 4.7074 0.0568 4.0714 20 6 2.8760 -0.7238 4.8415 21 7 1.7711 -1.3827 4.5679 22 14 3.1936 -0.1130 6.5780 23 1 2.0567 -0.4962 7.4533 24 1 4.4449 -0.7223 7.0959 25 1 3.3314 1.3655 6.5653 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 0.2121 2.3185 0.0107 30 1 1.3278 4.5115 0.0004 31 1 3.7845 4.6459 -0.0105 32 1 5.6645 4.4402 -0.9074 33 1 5.6711 4.4459 0.8726 34 1 7.0779 3.8201 -0.0210 35 1 5.5682 -0.5870 1.9373 36 1 3.2168 -2.8573 1.4463 37 1 4.3203 -2.9476 2.8400 38 1 2.5672 -2.7818 3.1015 39 1 1.1213 -1.5517 5.2680 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184274211.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:58 Heat of formation + Delta-G solvation = -114.397393 kcal Electronic energy + Delta-G solvation = -26016.550547 eV Core-core repulsion = 22245.759425 eV Total energy + Delta-G solvation = -3770.791123 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.102 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.34572 -39.00244 -36.26789 -36.22334 -35.22284 -34.91522 -32.07017 -31.22987 -29.45445 -28.08771 -27.73105 -26.60639 -25.11626 -23.15913 -21.72938 -20.76579 -19.18024 -18.31392 -17.30059 -16.71716 -16.54844 -16.23640 -16.05495 -15.60207 -15.34542 -15.02819 -14.78053 -14.50600 -14.32101 -13.41795 -13.09714 -12.79196 -12.67046 -12.44398 -12.02553 -12.00752 -11.56474 -11.50181 -11.42102 -11.37099 -11.23630 -11.06154 -11.02165 -10.90768 -10.62447 -10.49799 -10.17939 -10.06825 -9.97563 -9.05835 -8.82693 -8.51563 -8.12562 -8.01660 -6.06141 -4.12962 1.04786 1.43109 1.55262 2.99369 3.27942 3.32386 3.35132 3.58987 3.71763 4.05002 4.40311 4.60141 4.77903 4.80138 5.01131 5.14572 5.16103 5.22551 5.25114 5.36001 5.45388 5.50280 5.61683 5.70508 5.80079 6.13887 6.21342 6.39965 6.51426 6.56949 6.99302 7.22646 7.25227 7.30106 7.45076 7.69782 7.84057 8.01411 8.16437 8.41516 8.90668 9.52053 10.99282 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.012103 B = 0.006261 C = 0.006068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2313.004495 B = 4471.398701 C = 4612.938073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.277 6.277 3 C 0.266 3.734 4 C -0.270 4.270 5 C 0.005 3.995 6 C -0.275 4.275 7 C 0.258 3.742 8 O -0.287 6.287 9 C 0.025 3.975 10 C -0.737 4.737 11 S 2.698 3.302 12 O -0.973 6.973 13 O -0.952 6.952 14 N -1.100 6.100 15 C 0.275 3.725 16 H 0.046 0.954 17 C -0.155 4.155 18 C -0.522 4.522 19 H 0.062 0.938 20 C 0.064 3.936 21 N -0.887 5.887 22 Si 0.896 3.104 23 H -0.287 1.287 24 H -0.276 1.276 25 H -0.278 1.278 26 H 0.107 0.893 27 H 0.062 0.938 28 H 0.054 0.946 29 H 0.135 0.865 30 H 0.130 0.870 31 H 0.133 0.867 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.105 0.895 35 H 0.406 0.594 36 H 0.026 0.974 37 H 0.029 0.971 38 H 0.089 0.911 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.821 10.277 -8.683 13.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.187 6.187 3 C 0.216 3.784 4 C -0.289 4.289 5 C -0.013 4.013 6 C -0.294 4.294 7 C 0.209 3.791 8 O -0.198 6.198 9 C -0.070 4.070 10 C -0.823 4.823 11 S 2.785 3.215 12 O -0.963 6.963 13 O -0.942 6.942 14 N -0.860 5.860 15 C 0.171 3.829 16 H 0.064 0.936 17 C -0.215 4.215 18 C -0.562 4.562 19 H 0.080 0.920 20 C -0.138 4.138 21 N -0.526 5.526 22 Si 0.724 3.276 23 H -0.212 1.212 24 H -0.202 1.202 25 H -0.204 1.204 26 H 0.126 0.874 27 H 0.080 0.920 28 H 0.073 0.927 29 H 0.153 0.847 30 H 0.148 0.852 31 H 0.151 0.849 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.123 0.877 35 H 0.239 0.761 36 H 0.045 0.955 37 H 0.048 0.952 38 H 0.108 0.892 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.703 9.415 -9.407 13.328 hybrid contribution -0.279 1.529 1.640 2.260 sum -0.981 10.945 -7.766 13.456 Atomic orbital electron populations 1.23189 0.77664 1.04848 1.01131 1.86424 1.21979 1.24699 1.85583 1.18065 0.89844 0.85390 0.85053 1.21177 1.00329 0.92194 1.15217 1.20847 0.93746 0.97095 0.89610 1.21099 0.94992 0.97258 1.16084 1.18001 0.82711 0.92069 0.86330 1.86349 1.16138 1.30893 1.86438 1.23177 0.99651 0.82804 1.01405 1.29439 1.04277 1.18424 1.30144 1.01715 0.72968 0.73432 0.73424 1.93526 1.40593 1.84734 1.77464 1.93570 1.69652 1.53727 1.77298 1.55603 1.17102 1.83109 1.30234 1.18502 0.83000 0.92388 0.88994 0.93585 1.22202 1.01888 0.98000 0.99409 1.21327 1.05655 1.35927 0.93295 0.92020 1.24895 0.95042 0.95044 0.98849 1.69887 1.09190 1.40137 1.33338 0.86596 0.77799 0.79142 0.84062 1.21237 1.20159 1.20377 0.87435 0.91958 0.92739 0.84732 0.85233 0.84942 0.92435 0.92260 0.87678 0.76057 0.95470 0.95211 0.89240 0.92746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 9.81 101.05 0.99 1.36 16 2 O -0.28 -5.38 7.28 -41.17 -0.30 -5.68 16 3 C 0.27 5.02 6.23 -39.24 -0.24 4.78 16 4 C -0.27 -4.09 9.04 -39.40 -0.36 -4.44 16 5 C 0.01 0.07 10.04 -39.62 -0.40 -0.32 16 6 C -0.27 -3.92 9.04 -39.41 -0.36 -4.28 16 7 C 0.26 4.57 6.63 -39.24 -0.26 4.31 16 8 O -0.29 -4.91 8.33 -41.13 -0.34 -5.25 16 9 C 0.02 0.27 9.81 101.05 0.99 1.26 16 10 C -0.74 -14.77 5.84 -39.29 -0.23 -15.00 16 11 S 2.70 58.69 5.49 -107.50 -0.59 58.10 16 12 O -0.97 -21.69 16.02 -66.13 -1.06 -22.75 16 13 O -0.95 -22.52 15.27 -66.14 -1.01 -23.53 16 14 N -1.10 -24.66 5.46 -5.88 -0.03 -24.69 16 15 C 0.28 6.99 2.76 -69.09 -0.19 6.80 16 16 H 0.05 1.23 6.34 -51.93 -0.33 0.90 16 17 C -0.16 -3.92 9.29 37.16 0.35 -3.58 16 18 C -0.52 -14.02 8.76 -34.44 -0.30 -14.32 16 19 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 20 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 21 N -0.89 -24.41 11.32 55.43 0.63 -23.78 16 22 Si 0.90 20.78 29.54 -169.99 -5.02 15.76 16 23 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 25 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 26 H 0.11 1.37 8.14 -51.93 -0.42 0.95 16 27 H 0.06 0.82 7.65 -51.93 -0.40 0.43 16 28 H 0.05 0.60 7.67 -51.93 -0.40 0.20 16 29 H 0.13 1.63 6.29 -52.49 -0.33 1.30 16 30 H 0.13 1.22 8.06 -52.49 -0.42 0.79 16 31 H 0.13 1.43 6.29 -52.49 -0.33 1.10 16 32 H 0.06 0.52 7.66 -51.92 -0.40 0.12 16 33 H 0.06 0.57 7.66 -51.93 -0.40 0.17 16 34 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.41 8.35 8.83 -34.48 -0.30 8.05 16 36 H 0.03 0.65 7.64 -51.93 -0.40 0.25 16 37 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.09 2.39 6.07 -51.93 -0.32 2.08 16 39 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 333.31 15.07 5.02 5.02 Total: -1.00 -34.17 333.31 -7.64 -41.81 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: -4.83 Total: 6.79 kcal Atomic # 6 Polarization: -21.70 SS G_CDS: -0.10 Total: -21.80 kcal Atomic # 7 Polarization: -49.07 SS G_CDS: 0.60 Total: -48.47 kcal Atomic # 8 Polarization: -54.50 SS G_CDS: -2.71 Total: -57.22 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Atomic # 16 Polarization: 58.69 SS G_CDS: -0.59 Total: 58.10 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -34.17 -7.64 -41.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184274211.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.583 kcal (2) G-P(sol) polarization free energy of solvation -34.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds