Wall clock time and date at job start Tue Mar 31 2020 11:10:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35896 * 117.00084 * 2 1 4 4 C 1.38765 * 120.02897 * 0.27518 * 3 2 1 5 5 C 1.38174 * 120.05509 * 180.27595 * 4 3 2 6 6 C 1.38186 * 120.11051 * 359.72162 * 5 4 3 7 7 C 1.38771 * 120.04859 * 0.02562 * 6 5 4 8 8 O 1.35896 * 120.01970 * 180.02562 * 7 6 5 9 9 C 1.42895 * 117.00613 * 359.97438 * 8 7 6 10 10 C 1.38631 * 119.94966 * 0.02562 * 7 6 5 11 11 S 1.76201 * 120.05512 * 180.02562 * 10 7 6 12 12 O 1.42095 * 106.40030 * 336.45417 * 11 10 7 13 13 O 1.42101 * 106.40006 * 203.53505 * 11 10 7 14 14 N 1.65596 * 107.21777 * 89.99656 * 11 10 7 15 15 C 1.46499 * 120.00293 * 65.00327 * 14 11 10 16 16 H 1.09001 * 109.47097 * 24.99602 * 15 14 11 17 17 C 1.53005 * 109.46972 * 264.99706 * 15 14 11 18 18 C 1.50702 * 109.47411 * 144.99815 * 15 14 11 19 19 H 1.07999 * 119.99729 * 34.98580 * 18 15 14 20 20 C 1.37879 * 119.99776 * 214.99317 * 18 15 14 21 21 N 1.31513 * 119.99675 * 184.90160 * 20 18 15 22 22 Si 1.86793 * 120.00034 * 4.90605 * 20 18 15 23 23 H 1.48502 * 109.47182 * 84.83136 * 22 20 18 24 24 H 1.48506 * 109.47040 * 204.82515 * 22 20 18 25 25 H 1.48495 * 109.47339 * 324.82642 * 22 20 18 26 26 H 1.09001 * 109.47272 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47357 * 300.00594 * 1 2 3 28 28 H 1.09002 * 109.46821 * 59.99937 * 1 2 3 29 29 H 1.08005 * 119.97705 * 359.97438 * 4 3 2 30 30 H 1.07997 * 119.94953 * 179.74866 * 5 4 3 31 31 H 1.07996 * 119.97081 * 179.97438 * 6 5 4 32 32 H 1.09004 * 109.46672 * 59.99915 * 9 8 7 33 33 H 1.08995 * 109.47473 * 179.97438 * 9 8 7 34 34 H 1.09000 * 109.47207 * 300.00247 * 9 8 7 35 35 H 0.97008 * 119.99986 * 244.99791 * 14 11 10 36 36 H 1.08998 * 109.46953 * 55.01626 * 17 15 14 37 37 H 1.08997 * 109.47052 * 175.01568 * 17 15 14 38 38 H 1.09001 * 109.46619 * 295.01744 * 17 15 14 39 39 H 0.96994 * 120.00102 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2908 2.3750 0.0058 5 6 1.9175 3.6064 0.0000 6 6 3.2973 3.6820 -0.0057 7 6 4.0569 2.5207 -0.0062 8 8 5.4137 2.5957 -0.0113 9 6 5.9913 3.9027 -0.0165 10 6 3.4304 1.2840 -0.0015 11 16 4.3921 -0.1924 -0.0014 12 8 5.6564 0.1523 -0.5508 13 8 3.5621 -1.2119 -0.5409 14 7 4.6649 -0.5997 1.5803 15 6 3.5431 -0.9780 2.4433 16 1 2.7270 -1.3616 1.8310 17 6 3.0632 0.2480 3.2227 18 6 3.9901 -2.0444 3.4098 19 1 4.9959 -2.0295 3.8029 20 6 3.1151 -3.0389 3.7921 21 7 3.4723 -3.9129 4.7076 22 14 1.4223 -3.1452 3.0095 23 1 1.5122 -3.9051 1.7368 24 1 0.4915 -3.8390 3.9355 25 1 0.9175 -1.7761 2.7341 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 0.2122 2.3186 0.0098 30 1 1.3281 4.5114 0.0004 31 1 3.7848 4.6457 -0.0106 32 1 5.6713 4.4448 0.8734 33 1 7.0781 3.8198 -0.0198 34 1 5.6649 4.4406 -0.9066 35 1 5.5675 -0.5878 1.9355 36 1 2.8234 1.0508 2.5255 37 1 2.1742 -0.0118 3.7973 38 1 3.8502 0.5784 3.9006 39 1 2.8567 -4.6123 4.9769 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184274228.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:01 Heat of formation + Delta-G solvation = -112.070539 kcal Electronic energy + Delta-G solvation = -26181.662695 eV Core-core repulsion = 22410.972472 eV Total energy + Delta-G solvation = -3770.690223 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.102 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.54840 -39.19304 -36.46066 -36.32434 -35.41162 -34.99929 -32.12907 -31.41349 -29.64778 -28.89723 -27.90772 -26.79602 -25.23075 -23.32054 -21.90073 -20.64325 -19.33856 -18.56704 -17.59797 -16.89876 -16.78513 -16.42034 -16.17870 -15.73472 -15.55791 -15.26864 -14.95426 -14.66838 -14.24643 -13.47318 -13.28632 -12.96488 -12.88476 -12.64678 -12.46499 -12.19738 -11.84025 -11.70911 -11.61355 -11.59186 -11.52864 -11.24794 -11.16031 -10.95599 -10.81466 -10.67011 -10.39892 -10.20128 -9.76983 -9.24026 -8.99440 -8.60565 -8.34419 -8.21214 -6.14731 -4.14786 0.86100 1.27991 1.35158 2.81571 3.29443 3.36951 3.40067 3.43237 3.52903 3.94163 4.39226 4.48585 4.60530 4.63397 4.83814 4.96482 5.03765 5.05879 5.16354 5.19672 5.21751 5.39521 5.48249 5.50925 5.56900 5.95572 6.04155 6.18505 6.21487 6.32270 6.38189 6.55994 6.65420 7.13689 7.20399 7.23853 7.25328 7.57713 8.09948 8.46515 8.89514 9.46647 10.97404 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.015879 B = 0.006561 C = 0.005598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.920038 B = 4266.405318 C = 5000.568510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.281 6.281 3 C 0.262 3.738 4 C -0.271 4.271 5 C 0.006 3.994 6 C -0.273 4.273 7 C 0.258 3.742 8 O -0.286 6.286 9 C 0.024 3.976 10 C -0.739 4.739 11 S 2.688 3.312 12 O -0.968 6.968 13 O -0.951 6.951 14 N -1.092 6.092 15 C 0.236 3.764 16 H 0.056 0.944 17 C -0.156 4.156 18 C -0.512 4.512 19 H 0.081 0.919 20 C 0.077 3.923 21 N -0.890 5.890 22 Si 0.866 3.134 23 H -0.265 1.265 24 H -0.288 1.288 25 H -0.261 1.261 26 H 0.107 0.893 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.135 0.865 30 H 0.131 0.869 31 H 0.134 0.866 32 H 0.059 0.941 33 H 0.106 0.894 34 H 0.058 0.942 35 H 0.410 0.590 36 H 0.023 0.977 37 H 0.052 0.948 38 H 0.052 0.948 39 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.463 17.400 -8.993 20.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.191 6.191 3 C 0.212 3.788 4 C -0.291 4.291 5 C -0.013 4.013 6 C -0.293 4.293 7 C 0.209 3.791 8 O -0.197 6.197 9 C -0.071 4.071 10 C -0.824 4.824 11 S 2.774 3.226 12 O -0.958 6.958 13 O -0.941 6.941 14 N -0.853 5.853 15 C 0.131 3.869 16 H 0.073 0.927 17 C -0.215 4.215 18 C -0.552 4.552 19 H 0.099 0.901 20 C -0.127 4.127 21 N -0.527 5.527 22 Si 0.693 3.307 23 H -0.190 1.190 24 H -0.214 1.214 25 H -0.185 1.185 26 H 0.125 0.875 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.153 0.847 30 H 0.149 0.851 31 H 0.152 0.848 32 H 0.077 0.923 33 H 0.125 0.875 34 H 0.077 0.923 35 H 0.245 0.755 36 H 0.042 0.958 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.215 16.459 -9.724 19.576 hybrid contribution -1.287 1.010 0.248 1.654 sum -5.501 17.468 -9.476 20.620 Atomic orbital electron populations 1.23241 0.77701 1.04915 1.01400 1.86429 1.21948 1.24944 1.85798 1.18079 0.89869 0.85280 0.85525 1.21180 1.00334 0.92154 1.15389 1.20863 0.93760 0.97090 0.89539 1.21140 0.94974 0.97350 1.15808 1.18013 0.82845 0.91957 0.86276 1.86371 1.15999 1.31016 1.86291 1.23198 0.99803 0.82663 1.01421 1.29569 1.04247 1.18683 1.29938 1.02172 0.73162 0.73389 0.73847 1.93533 1.40261 1.84602 1.77391 1.93579 1.69736 1.53594 1.77181 1.55754 1.16900 1.82738 1.29864 1.18973 0.85014 0.93148 0.89735 0.92655 1.22411 1.00945 0.98142 1.00043 1.21041 1.01152 1.08609 1.24394 0.90084 1.24983 0.98403 0.94838 0.94454 1.69883 1.36672 1.16406 1.29736 0.87005 0.84428 0.79275 0.80026 1.19028 1.21374 1.18511 0.87501 0.92077 0.92190 0.84704 0.85129 0.84803 0.92263 0.87522 0.92342 0.75539 0.95755 0.92882 0.92855 0.92361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.81 101.05 0.99 1.27 16 2 O -0.28 -5.11 7.93 -41.16 -0.33 -5.43 16 3 C 0.26 4.45 5.83 -39.24 -0.23 4.22 16 4 C -0.27 -3.54 9.03 -39.41 -0.36 -3.90 16 5 C 0.01 0.07 10.04 -39.62 -0.40 -0.33 16 6 C -0.27 -3.36 9.04 -39.40 -0.36 -3.72 16 7 C 0.26 4.10 6.63 -39.24 -0.26 3.84 16 8 O -0.29 -4.45 8.33 -41.13 -0.34 -4.79 16 9 C 0.02 0.23 9.81 101.05 0.99 1.22 16 10 C -0.74 -13.56 4.96 -39.29 -0.20 -13.75 16 11 S 2.69 57.28 5.56 -107.50 -0.60 56.68 16 12 O -0.97 -21.24 16.02 -66.13 -1.06 -22.30 16 13 O -0.95 -22.80 15.35 -66.14 -1.02 -23.82 16 14 N -1.09 -23.79 5.46 -5.88 -0.03 -23.82 16 15 C 0.24 5.66 2.56 -69.08 -0.18 5.48 16 16 H 0.06 1.39 4.25 -51.93 -0.22 1.17 16 17 C -0.16 -3.28 9.50 37.16 0.35 -2.93 16 18 C -0.51 -14.16 9.11 -34.44 -0.31 -14.48 16 19 H 0.08 2.37 8.06 -52.49 -0.42 1.95 16 20 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 21 N -0.89 -26.64 13.96 55.43 0.77 -25.87 16 22 Si 0.87 21.39 26.99 -169.99 -4.59 16.80 16 23 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 25 H -0.26 -5.93 6.82 56.52 0.39 -5.54 16 26 H 0.11 1.27 8.14 -51.93 -0.42 0.85 16 27 H 0.06 0.67 7.65 -51.93 -0.40 0.28 16 28 H 0.06 0.58 7.67 -51.93 -0.40 0.18 16 29 H 0.14 1.36 6.29 -52.48 -0.33 1.03 16 30 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 31 H 0.13 1.20 6.29 -52.49 -0.33 0.87 16 32 H 0.06 0.47 7.66 -51.93 -0.40 0.07 16 33 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.06 0.46 7.66 -51.93 -0.40 0.06 16 35 H 0.41 8.26 8.83 -34.47 -0.30 7.95 16 36 H 0.02 0.45 6.18 -51.93 -0.32 0.13 16 37 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 331.91 15.07 5.00 5.00 Total: -1.00 -35.78 331.91 -7.02 -42.79 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -4.79 Total: 5.71 kcal Atomic # 6 Polarization: -20.91 SS G_CDS: -0.05 Total: -20.96 kcal Atomic # 7 Polarization: -50.43 SS G_CDS: 0.74 Total: -49.69 kcal Atomic # 8 Polarization: -53.59 SS G_CDS: -2.74 Total: -56.34 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.59 Total: 16.80 kcal Atomic # 16 Polarization: 57.28 SS G_CDS: -0.60 Total: 56.68 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -35.78 -7.02 -42.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184274228.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.277 kcal (2) G-P(sol) polarization free energy of solvation -35.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds