Wall clock time and date at job start Tue Mar 31 2020 11:10:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35896 * 117.00084 * 2 1 4 4 C 1.38765 * 120.02897 * 0.27518 * 3 2 1 5 5 C 1.38174 * 120.05509 * 180.27595 * 4 3 2 6 6 C 1.38186 * 120.11051 * 359.72162 * 5 4 3 7 7 C 1.38771 * 120.04859 * 0.02562 * 6 5 4 8 8 O 1.35896 * 120.01970 * 180.02562 * 7 6 5 9 9 C 1.42895 * 117.00613 * 359.97438 * 8 7 6 10 10 C 1.38631 * 119.94966 * 0.02562 * 7 6 5 11 11 S 1.76201 * 120.05512 * 180.02562 * 10 7 6 12 12 O 1.42095 * 106.40030 * 336.45417 * 11 10 7 13 13 O 1.42101 * 106.40006 * 203.53505 * 11 10 7 14 14 N 1.65596 * 107.21777 * 89.99656 * 11 10 7 15 15 C 1.46499 * 120.00293 * 65.00327 * 14 11 10 16 16 H 1.09001 * 109.47097 * 24.99602 * 15 14 11 17 17 C 1.53005 * 109.46972 * 264.99706 * 15 14 11 18 18 C 1.50702 * 109.47411 * 144.99815 * 15 14 11 19 19 H 1.07999 * 119.99729 * 34.98580 * 18 15 14 20 20 C 1.37879 * 119.99776 * 214.99317 * 18 15 14 21 21 N 1.31513 * 119.99675 * 184.90160 * 20 18 15 22 22 Si 1.86793 * 120.00034 * 4.90605 * 20 18 15 23 23 H 1.48502 * 109.47182 * 84.83136 * 22 20 18 24 24 H 1.48506 * 109.47040 * 204.82515 * 22 20 18 25 25 H 1.48495 * 109.47339 * 324.82642 * 22 20 18 26 26 H 1.09001 * 109.47272 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47357 * 300.00594 * 1 2 3 28 28 H 1.09002 * 109.46821 * 59.99937 * 1 2 3 29 29 H 1.08005 * 119.97705 * 359.97438 * 4 3 2 30 30 H 1.07997 * 119.94953 * 179.74866 * 5 4 3 31 31 H 1.07996 * 119.97081 * 179.97438 * 6 5 4 32 32 H 1.09004 * 109.46672 * 59.99915 * 9 8 7 33 33 H 1.08995 * 109.47473 * 179.97438 * 9 8 7 34 34 H 1.09000 * 109.47207 * 300.00247 * 9 8 7 35 35 H 0.97008 * 119.99986 * 244.99791 * 14 11 10 36 36 H 1.08998 * 109.46953 * 55.01626 * 17 15 14 37 37 H 1.08997 * 109.47052 * 175.01568 * 17 15 14 38 38 H 1.09001 * 109.46619 * 295.01744 * 17 15 14 39 39 H 0.96994 * 120.00102 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2908 2.3750 0.0058 5 6 1.9175 3.6064 0.0000 6 6 3.2973 3.6820 -0.0057 7 6 4.0569 2.5207 -0.0062 8 8 5.4137 2.5957 -0.0113 9 6 5.9913 3.9027 -0.0165 10 6 3.4304 1.2840 -0.0015 11 16 4.3921 -0.1924 -0.0014 12 8 5.6564 0.1523 -0.5508 13 8 3.5621 -1.2119 -0.5409 14 7 4.6649 -0.5997 1.5803 15 6 3.5431 -0.9780 2.4433 16 1 2.7270 -1.3616 1.8310 17 6 3.0632 0.2480 3.2227 18 6 3.9901 -2.0444 3.4098 19 1 4.9959 -2.0295 3.8029 20 6 3.1151 -3.0389 3.7921 21 7 3.4723 -3.9129 4.7076 22 14 1.4223 -3.1452 3.0095 23 1 1.5122 -3.9051 1.7368 24 1 0.4915 -3.8390 3.9355 25 1 0.9175 -1.7761 2.7341 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 0.2122 2.3186 0.0098 30 1 1.3281 4.5114 0.0004 31 1 3.7848 4.6457 -0.0106 32 1 5.6713 4.4448 0.8734 33 1 7.0781 3.8198 -0.0198 34 1 5.6649 4.4406 -0.9066 35 1 5.5675 -0.5878 1.9355 36 1 2.8234 1.0508 2.5255 37 1 2.1742 -0.0118 3.7973 38 1 3.8502 0.5784 3.9006 39 1 2.8567 -4.6123 4.9769 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184274228.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:00 Heat of formation + Delta-G solvation = -139.909299 kcal Electronic energy + Delta-G solvation = -26182.869874 eV Core-core repulsion = 22410.972472 eV Total energy + Delta-G solvation = -3771.897402 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.102 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.58162 -40.25289 -38.03140 -37.46479 -37.26613 -36.72472 -34.24731 -32.45687 -30.72395 -30.61274 -28.76344 -27.67311 -27.25275 -24.39950 -22.89591 -22.54689 -20.73323 -19.98407 -19.30456 -18.24733 -17.99828 -17.80085 -17.44484 -17.10203 -16.90395 -16.51500 -16.07946 -15.87901 -15.70628 -15.31446 -14.54462 -14.48725 -14.25393 -13.89954 -13.82684 -13.58412 -13.33753 -13.13572 -12.98243 -12.90768 -12.83754 -12.76720 -12.58052 -12.43361 -12.42602 -12.20237 -11.78254 -11.70101 -11.44347 -11.22582 -10.77946 -10.24142 -10.02967 -9.19185 -8.33569 -6.38355 -0.41564 -0.10137 0.34296 1.30466 1.40399 1.45782 1.85373 2.19702 2.33094 2.51717 2.57408 2.90242 3.07024 3.41632 3.80487 3.95643 4.13485 4.15423 4.30168 4.34152 4.36722 4.38790 4.41979 4.50461 4.62272 4.70266 4.76411 4.81059 4.89968 4.98942 5.08936 5.29138 5.38290 5.44061 5.48197 5.55082 6.18613 6.25588 6.30271 6.35050 6.67669 7.27000 8.82099 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.015879 B = 0.006561 C = 0.005598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.920038 B = 4266.405318 C = 5000.568510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.007 3.993 2 O -0.323 6.323 3 C 0.239 3.761 4 C -0.268 4.268 5 C 0.022 3.978 6 C -0.265 4.265 7 C 0.242 3.758 8 O -0.321 6.321 9 C 0.010 3.990 10 C -0.764 4.764 11 S 2.695 3.305 12 O -0.985 6.985 13 O -0.989 6.989 14 N -1.100 6.100 15 C 0.242 3.758 16 H 0.047 0.953 17 C -0.148 4.148 18 C -0.520 4.520 19 H 0.048 0.952 20 C 0.023 3.977 21 N -0.935 5.935 22 Si 0.916 3.084 23 H -0.277 1.277 24 H -0.275 1.275 25 H -0.228 1.228 26 H 0.105 0.895 27 H 0.079 0.921 28 H 0.089 0.911 29 H 0.167 0.833 30 H 0.181 0.819 31 H 0.171 0.829 32 H 0.080 0.920 33 H 0.116 0.884 34 H 0.080 0.920 35 H 0.413 0.587 36 H 0.048 0.952 37 H 0.055 0.945 38 H 0.054 0.946 39 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.933 21.521 -9.871 24.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 O -0.234 6.234 3 C 0.190 3.810 4 C -0.287 4.287 5 C 0.004 3.996 6 C -0.285 4.285 7 C 0.193 3.807 8 O -0.233 6.233 9 C -0.084 4.084 10 C -0.855 4.855 11 S 2.787 3.213 12 O -0.976 6.976 13 O -0.979 6.979 14 N -0.860 5.860 15 C 0.136 3.864 16 H 0.065 0.935 17 C -0.207 4.207 18 C -0.560 4.560 19 H 0.066 0.934 20 C -0.177 4.177 21 N -0.575 5.575 22 Si 0.739 3.261 23 H -0.203 1.203 24 H -0.200 1.200 25 H -0.151 1.151 26 H 0.124 0.876 27 H 0.098 0.902 28 H 0.107 0.893 29 H 0.185 0.815 30 H 0.198 0.802 31 H 0.189 0.811 32 H 0.099 0.901 33 H 0.134 0.866 34 H 0.098 0.902 35 H 0.247 0.753 36 H 0.067 0.933 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.646 20.549 -10.585 24.052 hybrid contribution -0.425 -0.102 0.444 0.623 sum -7.071 20.448 -10.141 23.895 Atomic orbital electron populations 1.23589 0.75567 1.05780 1.03760 1.86365 1.24476 1.26349 1.86228 1.18364 0.89594 0.86304 0.86777 1.21596 1.01803 0.91305 1.14005 1.21501 0.93652 0.98199 0.86241 1.21601 0.95529 0.97457 1.13876 1.18269 0.83378 0.92258 0.86798 1.86323 1.16275 1.34364 1.86296 1.23589 1.00335 0.80956 1.03480 1.28983 1.04858 1.17387 1.34253 1.01355 0.72910 0.74045 0.72943 1.93499 1.41589 1.85117 1.77349 1.93522 1.70271 1.56451 1.77675 1.55553 1.16664 1.83776 1.29984 1.18817 0.85120 0.93365 0.89105 0.93502 1.22264 1.00926 0.97414 1.00113 1.21298 0.99837 1.09854 1.25042 0.93361 1.25766 1.02376 0.94607 0.94914 1.70005 1.38336 1.17562 1.31559 0.86203 0.80400 0.80941 0.78567 1.20277 1.20047 1.15102 0.87614 0.90213 0.89271 0.81546 0.80175 0.81140 0.90145 0.86607 0.90158 0.75259 0.93258 0.92640 0.92691 0.92181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.15 9.81 113.37 1.11 1.26 16 2 O -0.32 -11.26 7.93 -71.59 -0.57 -11.82 16 3 C 0.24 7.55 5.83 22.49 0.13 7.68 16 4 C -0.27 -5.70 9.03 22.38 0.20 -5.49 16 5 C 0.02 0.36 10.04 22.24 0.22 0.58 16 6 C -0.27 -5.19 9.04 22.39 0.20 -4.99 16 7 C 0.24 7.10 6.63 22.49 0.15 7.25 16 8 O -0.32 -9.51 8.33 -71.62 -0.60 -10.11 16 9 C 0.01 0.16 9.81 113.37 1.11 1.28 16 10 C -0.76 -27.08 4.96 22.46 0.11 -26.97 16 11 S 2.69 117.54 5.56 -56.49 -0.31 117.22 16 12 O -0.99 -44.59 16.02 -119.43 -1.91 -46.51 16 13 O -0.99 -49.07 15.35 -119.43 -1.83 -50.90 16 14 N -1.10 -49.42 5.46 -172.51 -0.94 -50.36 16 15 C 0.24 11.70 2.56 44.25 0.11 11.81 16 16 H 0.05 2.37 4.25 -2.39 -0.01 2.36 16 17 C -0.15 -6.07 9.50 71.98 0.68 -5.38 16 18 C -0.52 -29.84 9.11 25.60 0.23 -29.61 16 19 H 0.05 3.00 8.06 -2.91 -0.02 2.97 16 20 C 0.02 1.35 5.47 84.66 0.46 1.81 16 21 N -0.94 -57.97 13.96 21.45 0.30 -57.68 16 22 Si 0.92 44.28 26.99 68.60 1.85 46.14 16 23 H -0.28 -13.84 7.11 99.48 0.71 -13.14 16 24 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 25 H -0.23 -9.75 6.82 99.48 0.68 -9.07 16 26 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 27 H 0.08 1.45 7.65 -2.39 -0.02 1.43 16 28 H 0.09 1.42 7.67 -2.39 -0.02 1.40 16 29 H 0.17 2.38 6.29 -2.91 -0.02 2.36 16 30 H 0.18 1.20 8.06 -2.91 -0.02 1.18 16 31 H 0.17 1.99 6.29 -2.91 -0.02 1.97 16 32 H 0.08 0.97 7.66 -2.38 -0.02 0.95 16 33 H 0.12 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.08 0.95 7.66 -2.39 -0.02 0.93 16 35 H 0.41 17.54 8.83 -96.74 -0.85 16.69 16 36 H 0.05 1.77 6.18 -2.39 -0.01 1.76 16 37 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 38 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 39 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 Total: -1.00 -82.74 331.91 0.93 -81.81 By element: Atomic # 1 Polarization: 22.77 SS G_CDS: 0.21 Total: 22.98 kcal Atomic # 6 Polarization: -45.51 SS G_CDS: 4.74 Total: -40.77 kcal Atomic # 7 Polarization: -107.40 SS G_CDS: -0.64 Total: -108.04 kcal Atomic # 8 Polarization: -114.43 SS G_CDS: -4.91 Total: -119.34 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 1.85 Total: 46.14 kcal Atomic # 16 Polarization: 117.54 SS G_CDS: -0.31 Total: 117.22 kcal Total: -82.74 0.93 -81.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184274228.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.095 kcal (2) G-P(sol) polarization free energy of solvation -82.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds