Wall clock time and date at job start Tue Mar 31 2020 11:09:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08992 * 109.47518 * 2 1 4 4 C 1.52999 * 109.47148 * 120.00339 * 2 1 3 5 5 C 1.50695 * 109.47238 * 184.99732 * 4 2 1 6 6 H 1.08003 * 119.99888 * 359.97438 * 5 4 2 7 7 C 1.37882 * 120.00299 * 180.02562 * 5 4 2 8 8 N 1.31510 * 120.00180 * 180.02562 * 7 5 4 9 9 Si 1.86799 * 119.99599 * 359.97438 * 7 5 4 10 10 H 1.48496 * 109.47478 * 90.00208 * 9 7 5 11 11 H 1.48509 * 109.46918 * 210.00206 * 9 7 5 12 12 H 1.48498 * 109.47277 * 329.99943 * 9 7 5 13 13 S 1.81399 * 109.46822 * 240.00034 * 2 1 3 14 14 C 1.76197 * 103.00045 * 65.00240 * 13 2 1 15 15 N 1.29642 * 125.41333 * 0.02562 * 14 13 2 16 16 N 1.37762 * 115.60844 * 179.97438 * 15 14 13 17 17 C 1.29584 * 115.62573 * 359.97438 * 16 15 14 18 18 N 1.38990 * 125.40539 * 180.02562 * 17 16 15 19 19 C 1.47020 * 110.99883 * 123.61312 * 18 17 16 20 20 C 1.53096 * 109.26030 * 177.61108 * 19 18 17 21 21 O 1.43013 * 109.26046 * 56.84501 * 20 19 18 22 22 C 1.43016 * 113.73994 * 301.33276 * 21 20 19 23 23 C 1.47017 * 111.00177 * 359.97438 * 18 17 16 24 24 S 1.76040 * 109.18668 * 359.77207 * 17 16 15 25 25 H 1.08992 * 109.47518 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46905 * 300.00035 * 1 2 3 27 27 H 1.09004 * 109.47446 * 59.99546 * 1 2 3 28 28 H 1.09000 * 109.46906 * 304.99539 * 4 2 1 29 29 H 1.09003 * 109.47143 * 64.99416 * 4 2 1 30 30 H 0.97000 * 119.99795 * 179.97438 * 8 7 5 31 31 H 1.08998 * 109.50426 * 297.54654 * 19 18 17 32 32 H 1.09000 * 109.50656 * 57.67021 * 19 18 17 33 33 H 1.09009 * 109.50272 * 296.90988 * 20 19 18 34 34 H 1.08998 * 109.54610 * 176.80736 * 20 19 18 35 35 H 1.08997 * 109.50542 * 298.73656 * 22 21 20 36 36 H 1.08995 * 109.54386 * 178.62302 * 22 21 20 37 37 H 1.08993 * 109.50031 * 302.32192 * 23 18 17 38 38 H 1.08997 * 109.50696 * 62.45603 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5418 -0.6151 1.3127 6 1 4.0789 -0.0863 0.5391 7 6 4.2304 -1.1938 2.3577 8 7 5.5410 -1.1006 2.4133 9 14 3.3015 -2.1089 3.6952 10 1 3.1697 -3.5388 3.3168 11 1 4.0454 -2.0023 4.9761 12 1 1.9508 -1.5130 3.8562 13 16 2.1345 -0.8551 -1.4812 14 6 1.5826 0.1847 -2.7922 15 7 0.9099 1.2834 -2.6472 16 7 0.5823 1.9392 -3.8136 17 6 0.9886 1.3749 -4.9070 18 7 0.7723 1.8593 -6.1917 19 6 2.0437 2.0392 -6.9079 20 6 1.7567 2.5158 -8.3342 21 8 0.9886 3.7211 -8.2833 22 6 -0.2564 3.5817 -7.5935 23 6 0.0100 3.1159 -6.1596 24 16 1.8643 -0.0989 -4.5066 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.6054 -0.2618 2.1369 29 1 1.7515 -1.7716 1.2055 30 1 6.0254 -1.5074 3.1487 31 1 2.6505 2.7825 -6.3909 32 1 2.5797 1.0907 -6.9418 33 1 1.1956 1.7488 -8.8682 34 1 2.6972 2.7051 -8.8516 35 1 -0.8760 2.8458 -8.1059 36 1 -0.7721 4.5418 -7.5743 37 1 -0.9383 2.9533 -5.6475 38 1 0.5843 3.8766 -5.6307 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188302675.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:14 Heat of formation + Delta-G solvation = 24.104736 kcal Electronic energy + Delta-G solvation = -21160.667695 eV Core-core repulsion = 17870.928098 eV Total energy + Delta-G solvation = -3289.739597 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.082 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.50726 -38.98060 -36.29321 -34.81915 -32.23900 -31.83736 -31.13073 -28.21493 -27.78258 -24.74606 -24.61086 -23.21983 -21.85483 -20.85849 -20.35547 -19.08598 -17.55801 -16.84177 -16.66205 -16.24905 -15.83222 -15.58673 -15.29901 -15.19703 -14.70032 -14.36213 -14.13396 -13.42931 -13.04416 -12.90472 -12.67183 -12.32558 -12.11942 -11.90771 -11.87832 -11.70527 -11.59783 -11.18863 -10.98913 -10.82364 -10.62789 -10.27889 -10.16416 -9.93889 -9.78436 -9.63892 -9.57060 -9.34970 -8.97813 -8.64072 -7.36812 -6.13484 -4.13722 0.49330 0.64417 1.17283 1.64991 2.17705 2.66909 3.04847 3.24202 3.32549 3.33736 3.37780 4.17028 4.35753 4.37259 4.52149 4.63093 4.64557 4.80997 4.99469 5.15359 5.16785 5.20147 5.27675 5.42134 5.45587 5.49881 5.58400 5.88574 6.02801 6.24698 6.28938 6.31206 6.52148 6.61756 6.92035 7.03675 7.58663 7.92110 8.39304 8.91489 9.46389 10.99004 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.034131 B = 0.002822 C = 0.002729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.183627 B = 9919.454305 C =10258.054730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.055 4.055 3 H 0.098 0.902 4 C 0.002 3.998 5 C -0.529 4.529 6 H 0.081 0.919 7 C 0.073 3.927 8 N -0.894 5.894 9 Si 0.874 3.126 10 H -0.275 1.275 11 H -0.286 1.286 12 H -0.265 1.265 13 S 0.056 5.944 14 C 0.032 3.968 15 N -0.285 5.285 16 N -0.318 5.318 17 C 0.215 3.785 18 N -0.442 5.442 19 C 0.014 3.986 20 C 0.067 3.933 21 O -0.382 6.382 22 C 0.064 3.936 23 C 0.026 3.974 24 S 0.087 5.913 25 H 0.058 0.942 26 H 0.065 0.935 27 H 0.063 0.937 28 H 0.042 0.958 29 H 0.023 0.977 30 H 0.265 0.735 31 H 0.064 0.936 32 H 0.098 0.902 33 H 0.066 0.934 34 H 0.109 0.891 35 H 0.064 0.936 36 H 0.108 0.892 37 H 0.101 0.899 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.244 4.489 -20.487 23.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.186 4.186 3 H 0.116 0.884 4 C -0.038 4.038 5 C -0.567 4.567 6 H 0.100 0.900 7 C -0.129 4.129 8 N -0.532 5.532 9 Si 0.701 3.299 10 H -0.201 1.201 11 H -0.212 1.212 12 H -0.189 1.189 13 S 0.287 5.713 14 C -0.365 4.365 15 N -0.116 5.116 16 N -0.148 5.148 17 C -0.169 4.169 18 N -0.165 5.165 19 C -0.113 4.113 20 C -0.011 4.011 21 O -0.300 6.300 22 C -0.014 4.014 23 C -0.103 4.103 24 S 0.322 5.678 25 H 0.078 0.922 26 H 0.084 0.916 27 H 0.081 0.919 28 H 0.060 0.940 29 H 0.041 0.959 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.116 0.884 33 H 0.084 0.916 34 H 0.127 0.873 35 H 0.082 0.918 36 H 0.126 0.874 37 H 0.119 0.881 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.899 3.627 -20.533 23.081 hybrid contribution -0.709 0.798 1.411 1.769 sum -10.608 4.425 -19.122 22.311 Atomic orbital electron populations 1.22136 0.93902 1.02221 1.02699 1.23622 0.97494 1.03145 0.94289 0.88400 1.19579 0.98195 0.95434 0.90564 1.21123 0.89047 1.36177 1.10351 0.90050 1.24975 0.94711 0.95620 0.97637 1.69897 1.06527 1.44639 1.32171 0.86862 0.80533 0.80703 0.81773 1.20079 1.21180 1.18917 1.86298 1.65362 1.26398 0.93205 1.31302 1.01774 1.01480 1.01914 1.75553 1.15160 1.05264 1.15600 1.75225 1.22480 1.23960 0.93174 1.27191 0.99618 0.96414 0.93653 1.59364 1.19176 1.29778 1.08213 1.23165 0.88761 1.03273 0.96110 1.22700 0.97099 0.87460 0.93795 1.88028 1.32205 1.33370 1.76394 1.22774 0.86191 1.02493 0.89910 1.22904 1.00066 0.88522 0.98858 1.85423 1.57741 1.24805 0.99856 0.92247 0.91593 0.91850 0.94014 0.95867 0.92531 0.91717 0.88382 0.91571 0.87279 0.91789 0.87412 0.88070 0.91569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.51 9.06 37.16 0.34 -2.18 16 2 C -0.06 -1.08 2.47 -26.73 -0.07 -1.15 16 3 H 0.10 2.03 8.14 -51.93 -0.42 1.61 16 4 C 0.00 0.03 3.51 -27.89 -0.10 -0.06 16 5 C -0.53 -14.26 9.09 -34.44 -0.31 -14.57 16 6 H 0.08 2.38 7.84 -52.48 -0.41 1.97 16 7 C 0.07 2.04 5.47 -17.82 -0.10 1.95 16 8 N -0.89 -26.70 13.96 55.43 0.77 -25.93 16 9 Si 0.87 20.76 27.47 -169.99 -4.67 16.09 16 10 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.26 -5.98 6.54 56.52 0.37 -5.61 16 13 S 0.06 1.05 20.90 -107.50 -2.25 -1.19 16 14 C 0.03 0.55 7.58 51.84 0.39 0.94 16 15 N -0.28 -5.22 9.95 31.11 0.31 -4.91 16 16 N -0.32 -5.32 11.08 30.85 0.34 -4.98 16 17 C 0.21 3.01 7.01 -87.39 -0.61 2.39 16 18 N -0.44 -4.85 4.80 -173.37 -0.83 -5.68 16 19 C 0.01 0.13 5.51 -3.71 -0.02 0.11 16 20 C 0.07 0.46 7.01 37.21 0.26 0.72 16 21 O -0.38 -3.39 10.83 -35.23 -0.38 -3.77 16 22 C 0.06 0.47 7.01 37.21 0.26 0.74 16 23 C 0.03 0.25 4.99 -3.71 -0.02 0.23 16 24 S 0.09 1.20 22.65 -107.50 -2.44 -1.24 16 25 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.06 1.07 6.23 -51.93 -0.32 0.75 16 28 H 0.04 0.93 7.20 -51.93 -0.37 0.56 16 29 H 0.02 0.51 7.57 -51.93 -0.39 0.12 16 30 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.10 0.76 7.55 -51.93 -0.39 0.37 16 33 H 0.07 0.40 8.14 -51.92 -0.42 -0.02 16 34 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.11 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.10 1.02 8.02 -51.93 -0.42 0.60 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 337.10 15.07 5.08 5.08 Total: -1.00 -31.18 337.10 -9.32 -40.49 By element: Atomic # 1 Polarization: 2.19 SS G_CDS: -5.28 Total: -3.10 kcal Atomic # 6 Polarization: -10.90 SS G_CDS: 0.03 Total: -10.88 kcal Atomic # 7 Polarization: -42.09 SS G_CDS: 0.59 Total: -41.49 kcal Atomic # 8 Polarization: -3.39 SS G_CDS: -0.38 Total: -3.77 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -4.67 Total: 16.09 kcal Atomic # 16 Polarization: 2.25 SS G_CDS: -4.68 Total: -2.43 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.18 -9.32 -40.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188302675.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.600 kcal (2) G-P(sol) polarization free energy of solvation -31.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds