Wall clock time and date at job start Tue Mar 31 2020 11:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08992 * 109.47518 * 2 1 4 4 C 1.52999 * 109.47148 * 120.00339 * 2 1 3 5 5 C 1.50695 * 109.47238 * 184.99732 * 4 2 1 6 6 H 1.08003 * 119.99888 * 359.97438 * 5 4 2 7 7 C 1.37882 * 120.00299 * 180.02562 * 5 4 2 8 8 N 1.31510 * 120.00180 * 180.02562 * 7 5 4 9 9 Si 1.86799 * 119.99599 * 359.97438 * 7 5 4 10 10 H 1.48496 * 109.47478 * 90.00208 * 9 7 5 11 11 H 1.48509 * 109.46918 * 210.00206 * 9 7 5 12 12 H 1.48498 * 109.47277 * 329.99943 * 9 7 5 13 13 S 1.81399 * 109.46822 * 240.00034 * 2 1 3 14 14 C 1.76197 * 103.00045 * 65.00240 * 13 2 1 15 15 N 1.29642 * 125.41333 * 0.02562 * 14 13 2 16 16 N 1.37762 * 115.60844 * 179.97438 * 15 14 13 17 17 C 1.29584 * 115.62573 * 359.97438 * 16 15 14 18 18 N 1.38990 * 125.40539 * 180.02562 * 17 16 15 19 19 C 1.47020 * 110.99883 * 123.61312 * 18 17 16 20 20 C 1.53096 * 109.26030 * 177.61108 * 19 18 17 21 21 O 1.43013 * 109.26046 * 56.84501 * 20 19 18 22 22 C 1.43016 * 113.73994 * 301.33276 * 21 20 19 23 23 C 1.47017 * 111.00177 * 359.97438 * 18 17 16 24 24 S 1.76040 * 109.18668 * 359.77207 * 17 16 15 25 25 H 1.08992 * 109.47518 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46905 * 300.00035 * 1 2 3 27 27 H 1.09004 * 109.47446 * 59.99546 * 1 2 3 28 28 H 1.09000 * 109.46906 * 304.99539 * 4 2 1 29 29 H 1.09003 * 109.47143 * 64.99416 * 4 2 1 30 30 H 0.97000 * 119.99795 * 179.97438 * 8 7 5 31 31 H 1.08998 * 109.50426 * 297.54654 * 19 18 17 32 32 H 1.09000 * 109.50656 * 57.67021 * 19 18 17 33 33 H 1.09009 * 109.50272 * 296.90988 * 20 19 18 34 34 H 1.08998 * 109.54610 * 176.80736 * 20 19 18 35 35 H 1.08997 * 109.50542 * 298.73656 * 22 21 20 36 36 H 1.08995 * 109.54386 * 178.62302 * 22 21 20 37 37 H 1.08993 * 109.50031 * 302.32192 * 23 18 17 38 38 H 1.08997 * 109.50696 * 62.45603 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5418 -0.6151 1.3127 6 1 4.0789 -0.0863 0.5391 7 6 4.2304 -1.1938 2.3577 8 7 5.5410 -1.1006 2.4133 9 14 3.3015 -2.1089 3.6952 10 1 3.1697 -3.5388 3.3168 11 1 4.0454 -2.0023 4.9761 12 1 1.9508 -1.5130 3.8562 13 16 2.1345 -0.8551 -1.4812 14 6 1.5826 0.1847 -2.7922 15 7 0.9099 1.2834 -2.6472 16 7 0.5823 1.9392 -3.8136 17 6 0.9886 1.3749 -4.9070 18 7 0.7723 1.8593 -6.1917 19 6 2.0437 2.0392 -6.9079 20 6 1.7567 2.5158 -8.3342 21 8 0.9886 3.7211 -8.2833 22 6 -0.2564 3.5817 -7.5935 23 6 0.0100 3.1159 -6.1596 24 16 1.8643 -0.0989 -4.5066 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.6054 -0.2618 2.1369 29 1 1.7515 -1.7716 1.2055 30 1 6.0254 -1.5074 3.1487 31 1 2.6505 2.7825 -6.3909 32 1 2.5797 1.0907 -6.9418 33 1 1.1956 1.7488 -8.8682 34 1 2.6972 2.7051 -8.8516 35 1 -0.8760 2.8458 -8.1059 36 1 -0.7721 4.5418 -7.5743 37 1 -0.9383 2.9533 -5.6475 38 1 0.5843 3.8766 -5.6307 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188302675.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:13 Heat of formation + Delta-G solvation = 3.137269 kcal Electronic energy + Delta-G solvation = -21161.576913 eV Core-core repulsion = 17870.928098 eV Total energy + Delta-G solvation = -3290.648815 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.082 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.41354 -40.04077 -37.15821 -36.53808 -34.20262 -32.62001 -32.21545 -29.91108 -28.75054 -25.81045 -25.40933 -25.01254 -22.80504 -22.45659 -21.34377 -20.28010 -18.92564 -18.63098 -17.64457 -17.20605 -16.80404 -16.60804 -16.28690 -16.27964 -16.00745 -15.62764 -15.24598 -14.86842 -14.60394 -14.29542 -13.99089 -13.57575 -13.48780 -13.30901 -12.86646 -12.83061 -12.57191 -12.53114 -12.28837 -12.06061 -11.82662 -11.79818 -11.69907 -11.46758 -11.24411 -11.12509 -10.95976 -10.74774 -10.60902 -10.01904 -8.79964 -8.26493 -6.31832 -0.73364 -0.56896 -0.05991 0.30883 0.92906 1.18003 1.38904 1.40392 1.50645 2.08109 2.37107 2.80883 3.08835 3.23243 3.64727 3.70212 3.78528 3.92023 3.97922 4.08090 4.12776 4.13854 4.32592 4.42156 4.58240 4.69281 4.76464 4.81603 4.85955 4.88109 5.05989 5.18842 5.19990 5.27492 5.28777 5.57968 6.03822 6.25899 6.67942 6.75216 7.31647 8.89266 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.034131 B = 0.002822 C = 0.002729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.183627 B = 9919.454305 C =10258.054730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.051 4.051 3 H 0.076 0.924 4 C 0.005 3.995 5 C -0.530 4.530 6 H 0.042 0.958 7 C 0.011 3.989 8 N -0.946 5.946 9 Si 0.942 3.058 10 H -0.266 1.266 11 H -0.287 1.287 12 H -0.241 1.241 13 S 0.032 5.968 14 C 0.013 3.987 15 N -0.303 5.303 16 N -0.347 5.347 17 C 0.222 3.778 18 N -0.437 5.437 19 C 0.010 3.990 20 C 0.068 3.932 21 O -0.397 6.397 22 C 0.069 3.931 23 C 0.025 3.975 24 S 0.142 5.858 25 H 0.073 0.927 26 H 0.079 0.921 27 H 0.059 0.941 28 H 0.050 0.950 29 H 0.034 0.966 30 H 0.266 0.734 31 H 0.055 0.945 32 H 0.110 0.890 33 H 0.080 0.920 34 H 0.132 0.868 35 H 0.077 0.923 36 H 0.127 0.873 37 H 0.096 0.904 38 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.130 3.987 -21.995 25.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.181 4.181 3 H 0.095 0.905 4 C -0.034 4.034 5 C -0.568 4.568 6 H 0.060 0.940 7 C -0.187 4.187 8 N -0.587 5.587 9 Si 0.765 3.235 10 H -0.191 1.191 11 H -0.213 1.213 12 H -0.164 1.164 13 S 0.262 5.738 14 C -0.385 4.385 15 N -0.134 5.134 16 N -0.179 5.179 17 C -0.160 4.160 18 N -0.161 5.161 19 C -0.117 4.117 20 C -0.008 4.008 21 O -0.316 6.316 22 C -0.008 4.008 23 C -0.104 4.104 24 S 0.377 5.623 25 H 0.092 0.908 26 H 0.097 0.903 27 H 0.078 0.922 28 H 0.068 0.932 29 H 0.053 0.947 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.128 0.872 33 H 0.098 0.902 34 H 0.150 0.850 35 H 0.095 0.905 36 H 0.144 0.856 37 H 0.115 0.885 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -11.805 3.141 -22.076 25.231 hybrid contribution -0.086 1.053 1.616 1.930 sum -11.892 4.194 -20.461 24.034 Atomic orbital electron populations 1.22049 0.91316 1.03323 1.03172 1.23427 0.99463 1.01498 0.93751 0.90540 1.19488 0.95035 0.96477 0.92404 1.21363 0.91510 1.34857 1.09063 0.93998 1.25912 0.95488 0.96819 1.00439 1.70056 1.08564 1.46601 1.33447 0.85784 0.80017 0.79590 0.78110 1.19111 1.21329 1.16403 1.86161 1.66819 1.26937 0.93853 1.31091 1.02546 1.01521 1.03314 1.75510 1.15149 1.05573 1.17214 1.75226 1.24618 1.24612 0.93439 1.27615 0.97772 0.96312 0.94333 1.59525 1.20183 1.30189 1.06213 1.23366 0.87567 1.03776 0.96960 1.22879 0.98273 0.87245 0.92442 1.88018 1.32763 1.34467 1.76317 1.22863 0.86086 1.03837 0.88010 1.22982 0.99324 0.87453 1.00597 1.85175 1.56729 1.23774 0.96597 0.90770 0.90258 0.92184 0.93163 0.94735 0.92502 0.92681 0.87194 0.90194 0.85001 0.90486 0.85558 0.88517 0.93132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.49 9.06 71.98 0.65 -3.83 16 2 C -0.05 -2.00 2.47 30.59 0.08 -1.92 16 3 H 0.08 3.28 8.14 -2.39 -0.02 3.26 16 4 C 0.01 0.22 3.51 29.85 0.10 0.33 16 5 C -0.53 -29.21 9.09 25.60 0.23 -28.98 16 6 H 0.04 2.58 7.84 -2.91 -0.02 2.55 16 7 C 0.01 0.62 5.47 84.66 0.46 1.08 16 8 N -0.95 -58.20 13.96 21.45 0.30 -57.90 16 9 Si 0.94 42.40 27.47 68.60 1.88 44.29 16 10 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 11 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 12 H -0.24 -9.84 6.54 99.48 0.65 -9.19 16 13 S 0.03 1.22 20.90 -56.49 -1.18 0.04 16 14 C 0.01 0.43 7.58 130.57 0.99 1.42 16 15 N -0.30 -11.18 9.95 -55.48 -0.55 -11.73 16 16 N -0.35 -11.55 11.08 -56.30 -0.62 -12.17 16 17 C 0.22 6.00 7.01 179.22 1.26 7.26 16 18 N -0.44 -8.89 4.80 -702.41 -3.37 -12.26 16 19 C 0.01 0.16 5.51 86.31 0.48 0.63 16 20 C 0.07 0.75 7.01 72.01 0.50 1.26 16 21 O -0.40 -6.07 10.83 -148.98 -1.61 -7.68 16 22 C 0.07 0.87 7.01 72.02 0.50 1.38 16 23 C 0.03 0.47 4.99 86.31 0.43 0.90 16 24 S 0.14 3.76 22.65 -56.49 -1.28 2.48 16 25 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 26 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 27 H 0.06 1.98 6.23 -2.38 -0.01 1.97 16 28 H 0.05 2.15 7.20 -2.39 -0.02 2.13 16 29 H 0.03 1.46 7.57 -2.39 -0.02 1.45 16 30 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 31 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.11 1.43 7.55 -2.39 -0.02 1.41 16 33 H 0.08 0.70 8.14 -2.38 -0.02 0.68 16 34 H 0.13 0.86 8.14 -2.39 -0.02 0.85 16 35 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.13 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.10 1.86 8.02 -2.39 -0.02 1.84 16 38 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -68.89 337.10 0.26 -68.63 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: 1.01 Total: 6.80 kcal Atomic # 6 Polarization: -26.17 SS G_CDS: 5.69 Total: -20.48 kcal Atomic # 7 Polarization: -89.82 SS G_CDS: -4.25 Total: -94.07 kcal Atomic # 8 Polarization: -6.07 SS G_CDS: -1.61 Total: -7.68 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 1.88 Total: 44.29 kcal Atomic # 16 Polarization: 4.97 SS G_CDS: -2.46 Total: 2.51 kcal Total: -68.89 0.26 -68.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188302675.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.769 kcal (2) G-P(sol) polarization free energy of solvation -68.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds