Wall clock time and date at job start Tue Mar 31 2020 11:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.52999 * 109.47317 * 239.99669 * 2 1 3 5 5 C 1.50700 * 109.47526 * 174.99949 * 4 2 1 6 6 H 1.07999 * 119.99543 * 0.02562 * 5 4 2 7 7 C 1.37876 * 120.00082 * 179.97438 * 5 4 2 8 8 N 1.31516 * 120.00029 * 179.97438 * 7 5 4 9 9 Si 1.86797 * 119.99986 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47247 * 90.00117 * 9 7 5 11 11 H 1.48508 * 109.47156 * 209.99775 * 9 7 5 12 12 H 1.48496 * 109.47338 * 329.99797 * 9 7 5 13 13 S 1.81399 * 109.47147 * 119.99916 * 2 1 3 14 14 C 1.76198 * 103.00025 * 294.99897 * 13 2 1 15 15 N 1.29638 * 125.41214 * 0.02562 * 14 13 2 16 16 N 1.37765 * 115.60492 * 179.97438 * 15 14 13 17 17 C 1.29577 * 115.62714 * 0.02562 * 16 15 14 18 18 N 1.39003 * 125.40652 * 180.02562 * 17 16 15 19 19 C 1.47008 * 111.00106 * 123.60685 * 18 17 16 20 20 C 1.53094 * 109.25768 * 177.60674 * 19 18 17 21 21 O 1.43019 * 109.25589 * 56.84837 * 20 19 18 22 22 C 1.43009 * 113.73852 * 301.32809 * 21 20 19 23 23 C 1.47012 * 110.99451 * 359.97073 * 18 17 16 24 24 S 1.76038 * 109.18917 * 359.76867 * 17 16 15 25 25 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 26 26 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 27 27 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47317 * 295.00638 * 4 2 1 29 29 H 1.09006 * 109.47194 * 55.00274 * 4 2 1 30 30 H 0.97002 * 119.99900 * 180.02562 * 8 7 5 31 31 H 1.09002 * 109.50870 * 297.54045 * 19 18 17 32 32 H 1.08999 * 109.50692 * 57.66997 * 19 18 17 33 33 H 1.08996 * 109.50875 * 296.91299 * 20 19 18 34 34 H 1.08998 * 109.54557 * 176.80138 * 20 19 18 35 35 H 1.08997 * 109.50763 * 298.73755 * 22 21 20 36 36 H 1.09008 * 109.53841 * 178.62824 * 22 21 20 37 37 H 1.09001 * 109.51219 * 302.32647 * 23 18 17 38 38 H 1.09001 * 109.50997 * 62.46294 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.6150 -1.3127 6 1 4.0790 -0.0862 -0.5392 7 6 4.2304 -1.1937 -2.3577 8 7 5.5411 -1.1005 -2.4134 9 14 3.3015 -2.1089 -3.6952 10 1 2.9408 -1.1641 -4.7826 11 1 4.1599 -3.1898 -4.2432 12 1 2.0654 -2.7005 -3.1232 13 16 2.1346 -0.8551 1.4811 14 6 1.5827 0.1847 2.7922 15 7 0.9092 1.2828 2.6473 16 7 0.5808 1.9382 3.8137 17 6 0.9874 1.3739 4.9071 18 7 0.7696 1.8574 6.1920 19 6 0.0880 0.8549 7.0236 20 6 -0.0779 1.4046 8.4428 21 8 -0.7946 2.6412 8.3889 22 6 -0.1586 3.6406 7.5877 23 6 0.0065 3.1136 6.1598 24 16 1.8529 -0.1059 4.5073 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.7516 -1.7716 -1.2056 29 1 1.6054 -0.2618 -2.1370 30 1 6.0254 -1.5073 -3.1489 31 1 -0.8927 0.6371 6.6007 32 1 0.6829 -0.0579 7.0541 33 1 0.9039 1.5720 8.8855 34 1 -0.6330 0.6885 9.0487 35 1 0.8209 3.8730 8.0055 36 1 -0.7718 4.5418 7.5745 37 1 0.5418 3.8495 5.5599 38 1 -0.9756 2.9318 5.7231 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188302697.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:16 Heat of formation + Delta-G solvation = 24.243215 kcal Electronic energy + Delta-G solvation = -21155.756682 eV Core-core repulsion = 17866.023089 eV Total energy + Delta-G solvation = -3289.733592 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.082 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.51660 -38.98402 -36.30155 -34.81922 -32.23746 -31.84886 -31.13239 -28.21698 -27.78754 -24.75555 -24.61346 -23.22062 -21.86178 -20.86010 -20.35992 -19.08953 -17.56139 -16.84282 -16.68234 -16.24967 -15.78481 -15.59176 -15.33181 -15.27582 -14.63813 -14.32584 -14.20120 -13.42535 -13.04773 -12.91149 -12.66308 -12.34242 -12.14105 -11.95067 -11.91832 -11.61886 -11.49321 -11.26780 -11.07013 -10.78406 -10.69243 -10.23364 -10.14975 -9.94881 -9.78045 -9.64721 -9.55039 -9.35274 -8.98357 -8.63790 -7.36864 -6.13036 -4.13331 0.49351 0.64611 1.17056 1.65277 2.17415 2.66883 3.03899 3.24333 3.32707 3.33892 3.36508 4.15760 4.36006 4.36421 4.51132 4.61793 4.63168 4.80121 4.98033 5.14572 5.16234 5.20498 5.25821 5.41763 5.45302 5.49093 5.58016 5.87940 6.02611 6.24335 6.29025 6.30769 6.51498 6.60557 6.89967 7.05236 7.58884 7.92113 8.39729 8.92095 9.46754 10.99443 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.038239 B = 0.002765 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.055816 B =10125.431454 C =10310.765952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.056 4.056 3 H 0.098 0.902 4 C 0.001 3.999 5 C -0.529 4.529 6 H 0.082 0.918 7 C 0.073 3.927 8 N -0.894 5.894 9 Si 0.874 3.126 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.264 1.264 13 S 0.058 5.942 14 C 0.032 3.968 15 N -0.285 5.285 16 N -0.318 5.318 17 C 0.215 3.785 18 N -0.441 5.441 19 C 0.015 3.985 20 C 0.066 3.934 21 O -0.382 6.382 22 C 0.063 3.937 23 C 0.026 3.974 24 S 0.086 5.914 25 H 0.065 0.935 26 H 0.062 0.938 27 H 0.058 0.942 28 H 0.028 0.972 29 H 0.037 0.963 30 H 0.265 0.735 31 H 0.063 0.937 32 H 0.098 0.902 33 H 0.067 0.933 34 H 0.109 0.891 35 H 0.065 0.935 36 H 0.108 0.892 37 H 0.102 0.898 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.956 3.418 20.610 24.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.186 4.186 3 H 0.116 0.884 4 C -0.038 4.038 5 C -0.567 4.567 6 H 0.100 0.900 7 C -0.129 4.129 8 N -0.532 5.532 9 Si 0.701 3.299 10 H -0.201 1.201 11 H -0.212 1.212 12 H -0.189 1.189 13 S 0.288 5.712 14 C -0.365 4.365 15 N -0.116 5.116 16 N -0.148 5.148 17 C -0.169 4.169 18 N -0.165 5.165 19 C -0.112 4.112 20 C -0.011 4.011 21 O -0.300 6.300 22 C -0.014 4.014 23 C -0.103 4.103 24 S 0.322 5.678 25 H 0.084 0.916 26 H 0.081 0.919 27 H 0.077 0.923 28 H 0.046 0.954 29 H 0.055 0.945 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.116 0.884 33 H 0.085 0.915 34 H 0.127 0.873 35 H 0.083 0.917 36 H 0.126 0.874 37 H 0.120 0.880 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -11.132 2.842 20.631 23.614 hybrid contribution -1.185 0.546 -1.403 1.916 sum -12.317 3.388 19.228 23.085 Atomic orbital electron populations 1.22138 0.93922 1.02191 1.02690 1.23615 0.97462 1.03158 0.94362 0.88399 1.19575 0.98157 0.95698 0.90354 1.21125 0.89055 1.36125 1.10400 0.90033 1.24976 0.94718 0.95590 0.97665 1.69901 1.06540 1.44648 1.32127 0.86865 0.80366 0.80133 0.82532 1.20126 1.21157 1.18881 1.86291 1.65179 1.26514 0.93167 1.31298 1.01658 1.01552 1.01978 1.75552 1.15405 1.04967 1.15645 1.75219 1.20162 1.25999 0.93462 1.27180 0.99350 0.96235 0.94115 1.59355 1.46820 1.05765 1.04540 1.23150 0.98745 0.94668 0.94664 1.22699 0.98018 0.86431 0.93950 1.88023 1.49194 1.22770 1.70046 1.22783 0.98949 0.91321 0.88347 1.22906 0.98002 0.90362 0.99055 1.85417 1.58730 1.23913 0.99782 0.91591 0.91874 0.92263 0.95429 0.94461 0.92531 0.91837 0.88422 0.91522 0.87323 0.91720 0.87389 0.88000 0.91623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 9.06 37.16 0.34 -2.16 16 2 C -0.06 -1.09 2.47 -26.73 -0.07 -1.16 16 3 H 0.10 2.04 8.14 -51.93 -0.42 1.61 16 4 C 0.00 0.03 3.51 -27.88 -0.10 -0.07 16 5 C -0.53 -14.29 9.09 -34.44 -0.31 -14.60 16 6 H 0.08 2.39 7.84 -52.49 -0.41 1.98 16 7 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 8 N -0.89 -26.76 13.96 55.43 0.77 -25.98 16 9 Si 0.87 20.77 27.47 -169.99 -4.67 16.10 16 10 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 12 H -0.26 -5.97 6.54 56.52 0.37 -5.60 16 13 S 0.06 1.07 20.90 -107.50 -2.25 -1.17 16 14 C 0.03 0.55 7.58 51.84 0.39 0.94 16 15 N -0.28 -5.21 9.95 31.11 0.31 -4.90 16 16 N -0.32 -5.32 11.08 30.86 0.34 -4.98 16 17 C 0.21 3.01 7.01 -87.38 -0.61 2.39 16 18 N -0.44 -4.85 4.80 -173.37 -0.83 -5.68 16 19 C 0.02 0.13 5.51 -3.72 -0.02 0.11 16 20 C 0.07 0.44 7.01 37.21 0.26 0.70 16 21 O -0.38 -3.32 10.83 -35.23 -0.38 -3.70 16 22 C 0.06 0.47 7.01 37.21 0.26 0.73 16 23 C 0.03 0.25 4.99 -3.71 -0.02 0.23 16 24 S 0.09 1.20 22.65 -107.50 -2.44 -1.24 16 25 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 26 H 0.06 1.06 6.23 -51.93 -0.32 0.74 16 27 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 28 H 0.03 0.62 7.20 -51.93 -0.37 0.24 16 29 H 0.04 0.82 7.57 -51.93 -0.39 0.43 16 30 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.10 0.72 7.55 -51.93 -0.39 0.32 16 33 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.11 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.11 0.61 8.14 -51.92 -0.42 0.18 16 37 H 0.10 1.05 8.02 -51.93 -0.42 0.64 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 LS Contribution 337.09 15.07 5.08 5.08 Total: -1.00 -31.30 337.09 -9.32 -40.62 By element: Atomic # 1 Polarization: 2.06 SS G_CDS: -5.28 Total: -3.23 kcal Atomic # 6 Polarization: -10.95 SS G_CDS: 0.03 Total: -10.92 kcal Atomic # 7 Polarization: -42.13 SS G_CDS: 0.59 Total: -41.54 kcal Atomic # 8 Polarization: -3.32 SS G_CDS: -0.38 Total: -3.70 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -4.67 Total: 16.10 kcal Atomic # 16 Polarization: 2.27 SS G_CDS: -4.68 Total: -2.41 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.30 -9.32 -40.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188302697.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.862 kcal (2) G-P(sol) polarization free energy of solvation -31.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.619 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds