Wall clock time and date at job start Tue Mar 31 2020 11:09:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.52999 * 109.47317 * 239.99669 * 2 1 3 5 5 C 1.50700 * 109.47526 * 174.99949 * 4 2 1 6 6 H 1.07999 * 119.99543 * 0.02562 * 5 4 2 7 7 C 1.37876 * 120.00082 * 179.97438 * 5 4 2 8 8 N 1.31516 * 120.00029 * 179.97438 * 7 5 4 9 9 Si 1.86797 * 119.99986 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47247 * 90.00117 * 9 7 5 11 11 H 1.48508 * 109.47156 * 209.99775 * 9 7 5 12 12 H 1.48496 * 109.47338 * 329.99797 * 9 7 5 13 13 S 1.81399 * 109.47147 * 119.99916 * 2 1 3 14 14 C 1.76198 * 103.00025 * 294.99897 * 13 2 1 15 15 N 1.29638 * 125.41214 * 0.02562 * 14 13 2 16 16 N 1.37765 * 115.60492 * 179.97438 * 15 14 13 17 17 C 1.29577 * 115.62714 * 0.02562 * 16 15 14 18 18 N 1.39003 * 125.40652 * 180.02562 * 17 16 15 19 19 C 1.47008 * 111.00106 * 123.60685 * 18 17 16 20 20 C 1.53094 * 109.25768 * 177.60674 * 19 18 17 21 21 O 1.43019 * 109.25589 * 56.84837 * 20 19 18 22 22 C 1.43009 * 113.73852 * 301.32809 * 21 20 19 23 23 C 1.47012 * 110.99451 * 359.97073 * 18 17 16 24 24 S 1.76038 * 109.18917 * 359.76867 * 17 16 15 25 25 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 26 26 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 27 27 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47317 * 295.00638 * 4 2 1 29 29 H 1.09006 * 109.47194 * 55.00274 * 4 2 1 30 30 H 0.97002 * 119.99900 * 180.02562 * 8 7 5 31 31 H 1.09002 * 109.50870 * 297.54045 * 19 18 17 32 32 H 1.08999 * 109.50692 * 57.66997 * 19 18 17 33 33 H 1.08996 * 109.50875 * 296.91299 * 20 19 18 34 34 H 1.08998 * 109.54557 * 176.80138 * 20 19 18 35 35 H 1.08997 * 109.50763 * 298.73755 * 22 21 20 36 36 H 1.09008 * 109.53841 * 178.62824 * 22 21 20 37 37 H 1.09001 * 109.51219 * 302.32647 * 23 18 17 38 38 H 1.09001 * 109.50997 * 62.46294 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.6150 -1.3127 6 1 4.0790 -0.0862 -0.5392 7 6 4.2304 -1.1937 -2.3577 8 7 5.5411 -1.1005 -2.4134 9 14 3.3015 -2.1089 -3.6952 10 1 2.9408 -1.1641 -4.7826 11 1 4.1599 -3.1898 -4.2432 12 1 2.0654 -2.7005 -3.1232 13 16 2.1346 -0.8551 1.4811 14 6 1.5827 0.1847 2.7922 15 7 0.9092 1.2828 2.6473 16 7 0.5808 1.9382 3.8137 17 6 0.9874 1.3739 4.9071 18 7 0.7696 1.8574 6.1920 19 6 0.0880 0.8549 7.0236 20 6 -0.0779 1.4046 8.4428 21 8 -0.7946 2.6412 8.3889 22 6 -0.1586 3.6406 7.5877 23 6 0.0065 3.1136 6.1598 24 16 1.8529 -0.1059 4.5073 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.7516 -1.7716 -1.2056 29 1 1.6054 -0.2618 -2.1370 30 1 6.0254 -1.5073 -3.1489 31 1 -0.8927 0.6371 6.6007 32 1 0.6829 -0.0579 7.0541 33 1 0.9039 1.5720 8.8855 34 1 -0.6330 0.6885 9.0487 35 1 0.8209 3.8730 8.0055 36 1 -0.7718 4.5418 7.5745 37 1 0.5418 3.8495 5.5599 38 1 -0.9756 2.9318 5.7231 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188302697.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:15 Heat of formation + Delta-G solvation = 3.133553 kcal Electronic energy + Delta-G solvation = -21156.672065 eV Core-core repulsion = 17866.023089 eV Total energy + Delta-G solvation = -3290.648976 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.082 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.41190 -40.03722 -37.15593 -36.53690 -34.20193 -32.61489 -32.21320 -29.91045 -28.74613 -25.80674 -25.40682 -25.01287 -22.79746 -22.45723 -21.34102 -20.27810 -18.92682 -18.62715 -17.67256 -17.14903 -16.74897 -16.65834 -16.33097 -16.27396 -16.01035 -15.59745 -15.22450 -14.88439 -14.60395 -14.27154 -14.02942 -13.57196 -13.50366 -13.27092 -12.89859 -12.72984 -12.52669 -12.51866 -12.43736 -12.10981 -11.82204 -11.75504 -11.65090 -11.46208 -11.26122 -11.10787 -10.96503 -10.74628 -10.60223 -10.01056 -8.79793 -8.26358 -6.31831 -0.73177 -0.55957 -0.05797 0.31312 0.93379 1.18296 1.38773 1.40425 1.50946 2.08153 2.37184 2.80912 3.08867 3.23813 3.65380 3.70392 3.78726 3.92189 3.98872 4.08091 4.12769 4.14329 4.33451 4.42390 4.58608 4.69708 4.76300 4.82030 4.86256 4.88132 5.04992 5.18110 5.21559 5.28066 5.29642 5.57972 6.03574 6.25991 6.68425 6.75357 7.31669 8.89445 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.038239 B = 0.002765 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.055816 B =10125.431454 C =10310.765952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.051 4.051 3 H 0.076 0.924 4 C 0.005 3.995 5 C -0.530 4.530 6 H 0.041 0.959 7 C 0.010 3.990 8 N -0.947 5.947 9 Si 0.943 3.057 10 H -0.267 1.267 11 H -0.287 1.287 12 H -0.240 1.240 13 S 0.033 5.967 14 C 0.012 3.988 15 N -0.303 5.303 16 N -0.348 5.348 17 C 0.223 3.777 18 N -0.440 5.440 19 C 0.011 3.989 20 C 0.067 3.933 21 O -0.396 6.396 22 C 0.069 3.931 23 C 0.026 3.974 24 S 0.141 5.859 25 H 0.079 0.921 26 H 0.059 0.941 27 H 0.073 0.927 28 H 0.036 0.964 29 H 0.049 0.951 30 H 0.266 0.734 31 H 0.060 0.940 32 H 0.110 0.890 33 H 0.077 0.923 34 H 0.134 0.866 35 H 0.074 0.926 36 H 0.127 0.873 37 H 0.092 0.908 38 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.968 2.827 22.115 26.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.182 4.182 3 H 0.094 0.906 4 C -0.034 4.034 5 C -0.568 4.568 6 H 0.060 0.940 7 C -0.187 4.187 8 N -0.587 5.587 9 Si 0.766 3.234 10 H -0.192 1.192 11 H -0.213 1.213 12 H -0.164 1.164 13 S 0.263 5.737 14 C -0.385 4.385 15 N -0.134 5.134 16 N -0.180 5.180 17 C -0.160 4.160 18 N -0.164 5.164 19 C -0.115 4.115 20 C -0.010 4.010 21 O -0.314 6.314 22 C -0.008 4.008 23 C -0.103 4.103 24 S 0.377 5.623 25 H 0.098 0.902 26 H 0.078 0.922 27 H 0.092 0.908 28 H 0.055 0.945 29 H 0.067 0.933 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.128 0.872 33 H 0.095 0.905 34 H 0.152 0.848 35 H 0.092 0.908 36 H 0.145 0.855 37 H 0.111 0.889 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -13.172 2.262 22.173 25.890 hybrid contribution -0.518 0.837 -1.600 1.878 sum -13.690 3.099 20.573 24.905 Atomic orbital electron populations 1.22051 0.91279 1.03299 1.03201 1.23424 0.99478 1.01479 0.93802 0.90579 1.19487 0.94982 0.96629 0.92322 1.21365 0.91547 1.34817 1.09079 0.94049 1.25921 0.95499 0.96796 1.00488 1.70062 1.08600 1.46610 1.33433 0.85773 0.79644 0.78752 0.79257 1.19218 1.21263 1.16350 1.86154 1.66679 1.27066 0.93839 1.31085 1.02464 1.01583 1.03371 1.75507 1.15359 1.05297 1.17269 1.75218 1.22121 1.26890 0.93724 1.27604 0.97851 0.95687 0.94846 1.59516 1.47188 1.06837 1.02833 1.23359 0.98429 0.94572 0.95156 1.22890 0.98973 0.86246 0.92851 1.88015 1.49959 1.23495 1.69962 1.22852 0.99907 0.91602 0.86441 1.22972 0.96958 0.89635 1.00744 1.85167 1.57640 1.23004 0.96523 0.90208 0.92182 0.90793 0.94537 0.93303 0.92502 0.92198 0.87179 0.90514 0.84784 0.90784 0.85518 0.88911 0.92711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.45 9.06 71.98 0.65 -3.80 16 2 C -0.05 -2.02 2.47 30.59 0.08 -1.94 16 3 H 0.08 3.27 8.14 -2.39 -0.02 3.25 16 4 C 0.00 0.22 3.51 29.85 0.10 0.32 16 5 C -0.53 -29.30 9.09 25.60 0.23 -29.07 16 6 H 0.04 2.56 7.84 -2.91 -0.02 2.53 16 7 C 0.01 0.59 5.47 84.65 0.46 1.05 16 8 N -0.95 -58.39 13.96 21.45 0.30 -58.09 16 9 Si 0.94 42.45 27.47 68.60 1.88 44.33 16 10 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 11 H -0.29 -12.87 7.11 99.48 0.71 -12.17 16 12 H -0.24 -9.82 6.54 99.48 0.65 -9.17 16 13 S 0.03 1.23 20.90 -56.49 -1.18 0.05 16 14 C 0.01 0.43 7.58 130.57 0.99 1.42 16 15 N -0.30 -11.17 9.95 -55.48 -0.55 -11.72 16 16 N -0.35 -11.56 11.08 -56.29 -0.62 -12.19 16 17 C 0.22 6.01 7.01 179.22 1.26 7.26 16 18 N -0.44 -8.94 4.80 -702.42 -3.37 -12.31 16 19 C 0.01 0.16 5.51 86.31 0.48 0.64 16 20 C 0.07 0.70 7.01 72.01 0.50 1.20 16 21 O -0.40 -5.82 10.83 -148.98 -1.61 -7.44 16 22 C 0.07 0.88 7.01 72.02 0.50 1.38 16 23 C 0.03 0.47 4.99 86.32 0.43 0.91 16 24 S 0.14 3.74 22.65 -56.49 -1.28 2.46 16 25 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 26 H 0.06 1.97 6.23 -2.39 -0.01 1.96 16 27 H 0.07 2.14 8.14 -2.38 -0.02 2.12 16 28 H 0.04 1.57 7.20 -2.39 -0.02 1.55 16 29 H 0.05 2.06 7.57 -2.38 -0.02 2.05 16 30 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 31 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.11 1.30 7.55 -2.39 -0.02 1.28 16 33 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.13 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.13 1.13 8.14 -2.38 -0.02 1.11 16 37 H 0.09 1.87 8.02 -2.39 -0.02 1.85 16 38 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -69.26 337.09 0.26 -69.00 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: 1.01 Total: 6.53 kcal Atomic # 6 Polarization: -26.32 SS G_CDS: 5.69 Total: -20.63 kcal Atomic # 7 Polarization: -90.06 SS G_CDS: -4.25 Total: -94.31 kcal Atomic # 8 Polarization: -5.82 SS G_CDS: -1.61 Total: -7.44 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 1.88 Total: 44.33 kcal Atomic # 16 Polarization: 4.97 SS G_CDS: -2.46 Total: 2.51 kcal Total: -69.26 0.26 -69.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188302697.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.135 kcal (2) G-P(sol) polarization free energy of solvation -69.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds