Wall clock time and date at job start Tue Mar 31 2020 10:39:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46738 * 2 1 4 4 C 1.53004 * 109.46573 * 119.99385 * 2 1 3 5 5 C 1.53002 * 109.46824 * 175.00113 * 4 2 1 6 6 N 1.46499 * 109.47365 * 180.19425 * 5 4 2 7 7 C 1.46505 * 119.99626 * 81.22877 * 6 5 4 8 8 C 1.50707 * 109.46805 * 230.15225 * 7 6 5 9 9 H 1.08004 * 119.99346 * 234.29283 * 8 7 6 10 10 C 1.37874 * 120.00105 * 54.29585 * 8 7 6 11 11 N 1.31512 * 120.00049 * 9.55394 * 10 8 7 12 12 Si 1.86802 * 119.99913 * 189.55250 * 10 8 7 13 13 H 1.48496 * 109.47048 * 89.99883 * 12 10 8 14 14 H 1.48503 * 109.47203 * 210.00208 * 12 10 8 15 15 H 1.48498 * 109.47165 * 330.00185 * 12 10 8 16 16 C 1.34777 * 120.00320 * 261.23513 * 6 5 4 17 17 O 1.21635 * 119.99845 * 0.27391 * 16 6 5 18 18 C 1.47180 * 119.99776 * 180.28192 * 16 6 5 19 19 C 1.35970 * 123.46064 * 22.71530 * 18 16 6 20 20 S 1.70437 * 110.84404 * 179.97438 * 19 18 16 21 21 C 1.75497 * 92.45929 * 0.02562 * 20 19 18 22 22 Cl 1.73606 * 124.71962 * 180.02562 * 21 20 19 23 23 C 1.32885 * 110.56136 * 359.73152 * 21 20 19 24 24 H 1.08992 * 109.47450 * 300.00552 * 1 2 3 25 25 H 1.09008 * 109.46582 * 60.00681 * 1 2 3 26 26 H 1.08995 * 109.47333 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.47450 * 239.99448 * 2 1 3 28 28 H 1.09004 * 109.46842 * 179.97438 * 3 2 1 29 29 H 1.08998 * 109.47164 * 299.98974 * 3 2 1 30 30 H 1.08995 * 109.47496 * 60.00053 * 3 2 1 31 31 H 1.08993 * 109.47061 * 55.00636 * 4 2 1 32 32 H 1.08998 * 109.47437 * 295.00049 * 4 2 1 33 33 H 1.09008 * 109.47085 * 60.19653 * 5 4 2 34 34 H 1.08994 * 109.47236 * 300.20096 * 5 4 2 35 35 H 1.08996 * 109.46861 * 110.15164 * 7 6 5 36 36 H 1.09005 * 109.47130 * 350.14573 * 7 6 5 37 37 H 0.96997 * 119.99917 * 174.90620 * 11 10 8 38 38 H 1.08001 * 124.57580 * 359.97438 * 19 18 16 39 39 H 1.08002 * 123.47713 * 180.22671 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7212 1.2494 5 6 3.5647 -0.8310 1.1882 6 7 4.0527 -1.5256 2.3822 7 6 4.0119 -2.9886 2.4464 8 6 3.3636 -3.4168 3.7378 9 1 3.8776 -4.0977 4.4002 10 6 2.1145 -2.9394 4.0736 11 7 1.4093 -2.2653 3.1917 12 14 1.4239 -3.2501 5.7812 13 1 1.8181 -2.1392 6.6843 14 1 -0.0574 -3.3280 5.7095 15 1 1.9619 -4.5303 6.3074 16 6 4.5390 -0.8187 3.4216 17 8 4.5681 0.3962 3.3703 18 6 5.0349 -1.5169 4.6186 19 6 5.4559 -2.8097 4.6118 20 16 5.9617 -3.2909 6.1667 21 6 5.6006 -1.7170 6.8538 22 17 5.8342 -1.2882 8.5198 23 6 5.1294 -0.8971 5.9202 24 1 -0.3634 0.5139 0.8898 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8934 -0.5139 -0.8898 28 1 3.1300 1.4426 0.0005 29 1 1.6767 1.9563 -0.8901 30 1 1.6766 1.9564 0.8899 31 1 1.6053 -1.7197 1.2953 32 1 1.7515 -0.1582 2.1370 33 1 3.9996 0.1677 1.1457 34 1 3.8533 -1.3909 0.2987 35 1 5.0271 -3.3827 2.4013 36 1 3.4350 -3.3733 1.6053 37 1 0.5022 -1.9934 3.4017 38 1 5.4681 -3.4458 3.7391 39 1 4.8433 0.1259 6.1150 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189245915.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:39:18 Heat of formation + Delta-G solvation = 7.292954 kcal Electronic energy + Delta-G solvation = -23087.916021 eV Core-core repulsion = 19763.110952 eV Total energy + Delta-G solvation = -3324.805068 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.080 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.28663 -36.80127 -36.16939 -35.62540 -34.67263 -32.30188 -30.19773 -27.86618 -27.14483 -26.64798 -24.16937 -23.25848 -22.40616 -19.93665 -19.27942 -18.77709 -17.00662 -16.46204 -15.70272 -15.04628 -14.96847 -14.53354 -14.10144 -13.82456 -13.44931 -13.29180 -13.02192 -12.77767 -12.54501 -12.38766 -12.06381 -11.89910 -11.72308 -11.45829 -11.34400 -11.07333 -11.01736 -10.86047 -10.64162 -10.53005 -10.27828 -10.26674 -10.14899 -9.78639 -9.70772 -9.41935 -8.87911 -8.67246 -8.01822 -7.76450 -7.29833 -6.20584 -4.35511 1.51433 1.66634 2.40460 2.73033 2.74112 3.17736 3.25006 3.31075 4.10779 4.20987 4.55538 5.08250 5.45754 5.56971 5.57928 5.64264 5.81426 6.03351 6.04717 6.10801 6.21523 6.27350 6.30252 6.32739 6.43658 6.55248 6.58306 6.62486 6.70161 6.71986 6.81160 6.88565 6.93358 7.37060 7.47226 7.57027 7.92640 7.98572 8.42834 8.72795 9.25263 9.40340 10.65848 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.016857 B = 0.005245 C = 0.004758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.644464 B = 5336.638032 C = 5883.573211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.101 4.101 3 C -0.145 4.145 4 C -0.113 4.113 5 C 0.124 3.876 6 N -0.570 5.570 7 C 0.225 3.775 8 C -0.548 4.548 9 H 0.074 0.926 10 C 0.091 3.909 11 N -0.839 5.839 12 Si 0.872 3.128 13 H -0.272 1.272 14 H -0.284 1.284 15 H -0.268 1.268 16 C 0.590 3.410 17 O -0.584 6.584 18 C -0.160 4.160 19 C -0.117 4.117 20 S 0.148 5.852 21 C -0.198 4.198 22 Cl -0.042 7.042 23 C -0.051 4.051 24 H 0.049 0.951 25 H 0.039 0.961 26 H 0.053 0.947 27 H 0.056 0.944 28 H 0.053 0.947 29 H 0.040 0.960 30 H 0.050 0.950 31 H 0.114 0.886 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.050 0.950 35 H 0.021 0.979 36 H 0.046 0.954 37 H 0.266 0.734 38 H 0.197 0.803 39 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.134 -1.092 -0.772 4.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.120 4.120 3 C -0.202 4.202 4 C -0.152 4.152 5 C 0.001 3.999 6 N -0.299 5.299 7 C 0.106 3.894 8 C -0.586 4.586 9 H 0.091 0.909 10 C -0.117 4.117 11 N -0.473 5.473 12 Si 0.698 3.302 13 H -0.197 1.197 14 H -0.210 1.210 15 H -0.192 1.192 16 C 0.378 3.622 17 O -0.468 6.468 18 C -0.173 4.173 19 C -0.254 4.254 20 S 0.408 5.592 21 C -0.339 4.339 22 Cl -0.014 7.014 23 C -0.083 4.083 24 H 0.068 0.932 25 H 0.058 0.942 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.131 0.869 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.068 0.932 35 H 0.039 0.961 36 H 0.064 0.936 37 H 0.077 0.923 38 H 0.214 0.786 39 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 4.573 -1.620 -0.107 4.853 hybrid contribution -1.395 1.246 0.614 1.968 sum 3.178 -0.375 0.508 3.240 Atomic orbital electron populations 1.21727 0.96039 1.01317 1.00332 1.21236 0.95274 0.95757 0.99780 1.21878 1.00995 0.96869 1.00484 1.22277 0.94468 1.03854 0.94554 1.21315 0.95725 0.96499 0.86366 1.48128 1.58432 1.08391 1.14939 1.19537 0.94112 0.77093 0.98701 1.21463 1.02354 1.29311 1.05440 0.90867 1.24863 0.96706 0.93299 0.96874 1.70019 1.09567 1.34548 1.33197 0.86847 0.78405 0.79588 0.85336 1.19709 1.20972 1.19211 1.17226 0.76964 0.85691 0.82270 1.90641 1.60227 1.14092 1.81840 1.19544 1.09410 0.94167 0.94206 1.26660 0.97395 0.99199 1.02191 1.82797 1.64503 1.11141 1.00755 1.24539 1.19418 1.00231 0.89738 1.98298 1.96168 1.92592 1.14308 1.21031 0.96815 1.00040 0.90394 0.93152 0.94155 0.92818 0.92534 0.92788 0.94123 0.93072 0.86853 0.92076 0.91676 0.93204 0.96147 0.93619 0.92327 0.78639 0.83675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 9.19 37.16 0.34 -1.73 16 2 C -0.10 -1.65 2.92 -90.61 -0.26 -1.91 16 3 C -0.14 -2.25 8.95 37.16 0.33 -1.92 16 4 C -0.11 -2.24 3.30 -26.73 -0.09 -2.33 16 5 C 0.12 2.47 5.19 -4.04 -0.02 2.45 16 6 N -0.57 -12.34 2.12 -176.41 -0.37 -12.72 16 7 C 0.23 4.65 5.23 -5.19 -0.03 4.62 16 8 C -0.55 -12.24 5.50 -34.44 -0.19 -12.43 16 9 H 0.07 1.60 5.93 -52.48 -0.31 1.29 16 10 C 0.09 2.17 5.15 -17.82 -0.09 2.08 16 11 N -0.84 -20.21 8.08 55.43 0.45 -19.76 16 12 Si 0.87 19.81 29.55 -169.99 -5.02 14.79 16 13 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 14 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 15 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 16 C 0.59 13.81 7.24 -12.63 -0.09 13.72 16 17 O -0.58 -15.08 16.35 5.25 0.09 -15.00 16 18 C -0.16 -3.40 4.97 -104.63 -0.52 -3.92 16 19 C -0.12 -2.18 6.48 29.92 0.19 -1.99 16 20 S 0.15 2.45 23.00 -107.50 -2.47 -0.02 16 21 C -0.20 -3.61 7.01 28.89 0.20 -3.41 16 22 Cl -0.04 -0.67 29.27 -51.86 -1.52 -2.19 16 23 C -0.05 -1.04 10.12 -38.98 -0.39 -1.43 16 24 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.04 0.53 8.14 -51.92 -0.42 0.11 16 26 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.05 0.85 6.57 -51.93 -0.34 0.51 16 29 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.11 2.47 5.94 -51.93 -0.31 2.16 16 32 H 0.06 1.42 7.61 -51.93 -0.40 1.02 16 33 H 0.06 1.34 5.61 -51.92 -0.29 1.05 16 34 H 0.05 0.88 8.13 -51.93 -0.42 0.46 16 35 H 0.02 0.38 5.91 -51.93 -0.31 0.08 16 36 H 0.05 0.97 7.95 -51.93 -0.41 0.56 16 37 H 0.27 6.39 8.32 -40.82 -0.34 6.05 16 38 H 0.20 3.48 3.82 -52.49 -0.20 3.28 16 39 H 0.15 2.96 8.06 -52.49 -0.42 2.53 16 LS Contribution 333.62 15.07 5.03 5.03 Total: -1.00 -25.44 333.62 -9.53 -34.97 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -5.08 Total: 3.09 kcal Atomic # 6 Polarization: -7.56 SS G_CDS: -0.62 Total: -8.18 kcal Atomic # 7 Polarization: -32.56 SS G_CDS: 0.07 Total: -32.48 kcal Atomic # 8 Polarization: -15.08 SS G_CDS: 0.09 Total: -15.00 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.02 Total: 14.79 kcal Atomic # 16 Polarization: 2.45 SS G_CDS: -2.47 Total: -0.02 kcal Atomic # 17 Polarization: -0.67 SS G_CDS: -1.52 Total: -2.19 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -25.44 -9.53 -34.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189245915.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.258 kcal (2) G-P(sol) polarization free energy of solvation -25.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds