Wall clock time and date at job start Tue Mar 31 2020 10:39:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46738 * 2 1 4 4 C 1.53004 * 109.46573 * 119.99385 * 2 1 3 5 5 C 1.53002 * 109.46824 * 175.00113 * 4 2 1 6 6 N 1.46499 * 109.47365 * 180.19425 * 5 4 2 7 7 C 1.46505 * 119.99626 * 81.22877 * 6 5 4 8 8 C 1.50707 * 109.46805 * 230.15225 * 7 6 5 9 9 H 1.08004 * 119.99346 * 234.29283 * 8 7 6 10 10 C 1.37874 * 120.00105 * 54.29585 * 8 7 6 11 11 N 1.31512 * 120.00049 * 9.55394 * 10 8 7 12 12 Si 1.86802 * 119.99913 * 189.55250 * 10 8 7 13 13 H 1.48496 * 109.47048 * 89.99883 * 12 10 8 14 14 H 1.48503 * 109.47203 * 210.00208 * 12 10 8 15 15 H 1.48498 * 109.47165 * 330.00185 * 12 10 8 16 16 C 1.34777 * 120.00320 * 261.23513 * 6 5 4 17 17 O 1.21635 * 119.99845 * 0.27391 * 16 6 5 18 18 C 1.47180 * 119.99776 * 180.28192 * 16 6 5 19 19 C 1.35970 * 123.46064 * 22.71530 * 18 16 6 20 20 S 1.70437 * 110.84404 * 179.97438 * 19 18 16 21 21 C 1.75497 * 92.45929 * 0.02562 * 20 19 18 22 22 Cl 1.73606 * 124.71962 * 180.02562 * 21 20 19 23 23 C 1.32885 * 110.56136 * 359.73152 * 21 20 19 24 24 H 1.08992 * 109.47450 * 300.00552 * 1 2 3 25 25 H 1.09008 * 109.46582 * 60.00681 * 1 2 3 26 26 H 1.08995 * 109.47333 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.47450 * 239.99448 * 2 1 3 28 28 H 1.09004 * 109.46842 * 179.97438 * 3 2 1 29 29 H 1.08998 * 109.47164 * 299.98974 * 3 2 1 30 30 H 1.08995 * 109.47496 * 60.00053 * 3 2 1 31 31 H 1.08993 * 109.47061 * 55.00636 * 4 2 1 32 32 H 1.08998 * 109.47437 * 295.00049 * 4 2 1 33 33 H 1.09008 * 109.47085 * 60.19653 * 5 4 2 34 34 H 1.08994 * 109.47236 * 300.20096 * 5 4 2 35 35 H 1.08996 * 109.46861 * 110.15164 * 7 6 5 36 36 H 1.09005 * 109.47130 * 350.14573 * 7 6 5 37 37 H 0.96997 * 119.99917 * 174.90620 * 11 10 8 38 38 H 1.08001 * 124.57580 * 359.97438 * 19 18 16 39 39 H 1.08002 * 123.47713 * 180.22671 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7212 1.2494 5 6 3.5647 -0.8310 1.1882 6 7 4.0527 -1.5256 2.3822 7 6 4.0119 -2.9886 2.4464 8 6 3.3636 -3.4168 3.7378 9 1 3.8776 -4.0977 4.4002 10 6 2.1145 -2.9394 4.0736 11 7 1.4093 -2.2653 3.1917 12 14 1.4239 -3.2501 5.7812 13 1 1.8181 -2.1392 6.6843 14 1 -0.0574 -3.3280 5.7095 15 1 1.9619 -4.5303 6.3074 16 6 4.5390 -0.8187 3.4216 17 8 4.5681 0.3962 3.3703 18 6 5.0349 -1.5169 4.6186 19 6 5.4559 -2.8097 4.6118 20 16 5.9617 -3.2909 6.1667 21 6 5.6006 -1.7170 6.8538 22 17 5.8342 -1.2882 8.5198 23 6 5.1294 -0.8971 5.9202 24 1 -0.3634 0.5139 0.8898 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8934 -0.5139 -0.8898 28 1 3.1300 1.4426 0.0005 29 1 1.6767 1.9563 -0.8901 30 1 1.6766 1.9564 0.8899 31 1 1.6053 -1.7197 1.2953 32 1 1.7515 -0.1582 2.1370 33 1 3.9996 0.1677 1.1457 34 1 3.8533 -1.3909 0.2987 35 1 5.0271 -3.3827 2.4013 36 1 3.4350 -3.3733 1.6053 37 1 0.5022 -1.9934 3.4017 38 1 5.4681 -3.4458 3.7391 39 1 4.8433 0.1259 6.1150 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189245915.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:39:17 Heat of formation + Delta-G solvation = -3.361628 kcal Electronic energy + Delta-G solvation = -23088.378038 eV Core-core repulsion = 19763.110952 eV Total energy + Delta-G solvation = -3325.267086 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.080 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.98038 -38.27039 -37.63160 -37.27476 -36.23801 -34.06928 -31.76225 -29.39701 -28.84222 -27.92881 -25.75612 -24.98494 -23.94434 -21.48658 -20.75200 -20.36997 -18.57128 -18.16207 -17.36114 -16.80334 -16.60767 -15.98953 -15.77482 -15.34896 -14.97401 -14.78139 -14.48264 -14.32742 -14.15268 -14.04463 -13.60377 -13.44191 -13.12447 -13.01377 -12.87183 -12.81535 -12.53059 -12.46169 -12.11948 -12.03892 -11.81241 -11.68072 -11.60581 -11.42893 -11.31310 -11.01642 -10.63702 -10.46053 -9.51465 -9.30273 -8.94685 -8.00339 -6.15330 0.00924 0.23092 0.91495 1.11678 1.29275 1.34262 1.42799 1.45624 2.37076 2.42877 2.84957 3.30474 4.07887 4.13264 4.18852 4.26066 4.31779 4.49051 4.55609 4.75477 4.79038 4.82347 4.88607 4.95440 4.98478 5.03486 5.07556 5.15718 5.21855 5.32376 5.36193 5.38570 5.52095 5.67288 5.78035 5.86184 6.21772 6.30979 6.65967 6.99904 7.45012 7.65106 8.83447 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.016857 B = 0.005245 C = 0.004758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.644464 B = 5336.638032 C = 5883.573211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.098 4.098 3 C -0.140 4.140 4 C -0.095 4.095 5 C 0.120 3.880 6 N -0.569 5.569 7 C 0.224 3.776 8 C -0.542 4.542 9 H 0.083 0.917 10 C 0.059 3.941 11 N -0.853 5.853 12 Si 0.896 3.104 13 H -0.294 1.294 14 H -0.290 1.290 15 H -0.253 1.253 16 C 0.578 3.422 17 O -0.623 6.623 18 C -0.184 4.184 19 C -0.119 4.119 20 S 0.227 5.773 21 C -0.201 4.201 22 Cl -0.021 7.021 23 C -0.077 4.077 24 H 0.035 0.965 25 H 0.066 0.934 26 H 0.049 0.951 27 H 0.076 0.924 28 H 0.047 0.953 29 H 0.067 0.933 30 H 0.031 0.969 31 H 0.096 0.904 32 H 0.018 0.982 33 H 0.054 0.946 34 H 0.076 0.924 35 H 0.051 0.949 36 H 0.042 0.958 37 H 0.258 0.742 38 H 0.208 0.792 39 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.153 -2.701 -1.132 5.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.117 4.117 3 C -0.197 4.197 4 C -0.134 4.134 5 C -0.003 4.003 6 N -0.297 5.297 7 C 0.104 3.896 8 C -0.580 4.580 9 H 0.101 0.899 10 C -0.147 4.147 11 N -0.488 5.488 12 Si 0.724 3.276 13 H -0.221 1.221 14 H -0.216 1.216 15 H -0.176 1.176 16 C 0.367 3.633 17 O -0.510 6.510 18 C -0.198 4.198 19 C -0.257 4.257 20 S 0.488 5.512 21 C -0.343 4.343 22 Cl 0.007 6.993 23 C -0.109 4.109 24 H 0.054 0.946 25 H 0.085 0.915 26 H 0.068 0.932 27 H 0.094 0.906 28 H 0.066 0.934 29 H 0.086 0.914 30 H 0.051 0.949 31 H 0.114 0.886 32 H 0.037 0.963 33 H 0.073 0.927 34 H 0.095 0.905 35 H 0.069 0.931 36 H 0.060 0.940 37 H 0.068 0.932 38 H 0.224 0.776 39 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 5.592 -3.276 -0.467 6.498 hybrid contribution -1.626 1.718 0.814 2.502 sum 3.966 -1.558 0.347 4.275 Atomic orbital electron populations 1.21681 0.95132 1.01253 1.00906 1.21207 0.96038 0.95941 0.98512 1.21820 1.00587 0.96422 1.00888 1.21983 0.94316 1.02468 0.94590 1.21453 0.95651 0.96363 0.86814 1.48227 1.57603 1.08833 1.15002 1.19623 0.95636 0.76487 0.97810 1.21679 1.01859 1.28475 1.06012 0.89936 1.25237 0.97628 0.94072 0.97731 1.70132 1.09285 1.35868 1.33551 0.86473 0.77922 0.79133 0.84110 1.22125 1.21583 1.17639 1.17672 0.76941 0.85500 0.83165 1.90600 1.62036 1.15703 1.82641 1.19491 1.11209 0.95305 0.93816 1.26801 0.96358 0.98312 1.04233 1.82528 1.62224 1.08489 0.97957 1.24816 1.17713 1.01186 0.90591 1.98307 1.95941 1.92636 1.12418 1.20984 0.98817 1.00159 0.90950 0.94609 0.91506 0.93221 0.90598 0.93357 0.91364 0.94945 0.88639 0.96349 0.92742 0.90547 0.93128 0.93988 0.93220 0.77574 0.85017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.90 9.19 71.98 0.66 -3.24 16 2 C -0.10 -3.10 2.92 -10.79 -0.03 -3.13 16 3 C -0.14 -4.25 8.95 71.98 0.64 -3.60 16 4 C -0.10 -3.82 3.30 30.60 0.10 -3.72 16 5 C 0.12 4.77 5.19 86.38 0.45 5.22 16 6 N -0.57 -24.61 2.12 -830.28 -1.76 -26.37 16 7 C 0.22 8.91 5.23 85.63 0.45 9.36 16 8 C -0.54 -23.46 5.50 25.60 0.14 -23.31 16 9 H 0.08 3.37 5.93 -2.91 -0.02 3.35 16 10 C 0.06 2.82 5.15 84.65 0.44 3.26 16 11 N -0.85 -41.87 8.08 21.45 0.17 -41.70 16 12 Si 0.90 40.16 29.55 68.60 2.03 42.19 16 13 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 14 H -0.29 -13.14 7.11 99.48 0.71 -12.44 16 15 H -0.25 -10.61 7.11 99.48 0.71 -9.91 16 16 C 0.58 27.49 7.24 86.59 0.63 28.11 16 17 O -0.62 -33.41 16.35 -4.14 -0.07 -33.48 16 18 C -0.18 -7.79 4.97 -19.87 -0.10 -7.89 16 19 C -0.12 -4.20 6.48 67.29 0.44 -3.77 16 20 S 0.23 6.83 23.00 -56.49 -1.30 5.53 16 21 C -0.20 -7.04 7.01 66.64 0.47 -6.57 16 22 Cl -0.02 -0.65 29.27 -2.72 -0.08 -0.72 16 23 C -0.08 -3.15 10.12 22.68 0.23 -2.92 16 24 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 25 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 26 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 28 H 0.05 1.50 6.57 -2.38 -0.02 1.49 16 29 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.10 4.22 5.94 -2.39 -0.01 4.21 16 32 H 0.02 0.87 7.61 -2.39 -0.02 0.85 16 33 H 0.05 2.28 5.61 -2.38 -0.01 2.27 16 34 H 0.08 2.60 8.13 -2.39 -0.02 2.59 16 35 H 0.05 1.72 5.91 -2.39 -0.01 1.71 16 36 H 0.04 1.72 7.95 -2.38 -0.02 1.70 16 37 H 0.26 12.81 8.32 -92.71 -0.77 12.04 16 38 H 0.21 6.72 3.82 -2.91 -0.01 6.71 16 39 H 0.13 5.59 8.06 -2.91 -0.02 5.57 16 Total: -1.00 -55.68 333.62 4.57 -51.11 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: 1.07 Total: 15.65 kcal Atomic # 6 Polarization: -16.72 SS G_CDS: 4.51 Total: -12.21 kcal Atomic # 7 Polarization: -66.48 SS G_CDS: -1.58 Total: -68.07 kcal Atomic # 8 Polarization: -33.41 SS G_CDS: -0.07 Total: -33.48 kcal Atomic # 14 Polarization: 40.16 SS G_CDS: 2.03 Total: 42.19 kcal Atomic # 16 Polarization: 6.83 SS G_CDS: -1.30 Total: 5.53 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -0.08 Total: -0.72 kcal Total: -55.68 4.57 -51.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189245915.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.746 kcal (2) G-P(sol) polarization free energy of solvation -55.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds