Wall clock time and date at job start Tue Mar 31 2020 10:39:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47298 * 2 1 4 4 C 1.52998 * 109.47060 * 240.00378 * 2 1 3 5 5 C 1.52994 * 109.47645 * 119.99925 * 2 1 3 6 6 N 1.46508 * 109.46942 * 55.39389 * 5 2 1 7 7 C 1.46501 * 119.99956 * 89.85339 * 6 5 2 8 8 C 1.50701 * 109.46982 * 82.10407 * 7 6 5 9 9 H 1.08000 * 120.00001 * 5.30470 * 8 7 6 10 10 C 1.37878 * 120.00301 * 185.30778 * 8 7 6 11 11 N 1.31514 * 119.99372 * 359.97438 * 10 8 7 12 12 Si 1.86793 * 120.00274 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.47400 * 59.99935 * 12 10 8 14 14 H 1.48498 * 109.47209 * 180.02562 * 12 10 8 15 15 H 1.48503 * 109.47199 * 299.99968 * 12 10 8 16 16 C 1.34773 * 120.00042 * 269.85877 * 6 5 2 17 17 O 1.21640 * 120.00030 * 2.98319 * 16 6 5 18 18 C 1.47176 * 119.99979 * 182.98992 * 16 6 5 19 19 C 1.35974 * 123.46119 * 22.09796 * 18 16 6 20 20 S 1.70435 * 110.84916 * 179.97438 * 19 18 16 21 21 C 1.75505 * 92.45933 * 359.97438 * 20 19 18 22 22 Cl 1.73598 * 124.72307 * 179.97438 * 21 20 19 23 23 C 1.32890 * 110.55879 * 359.75534 * 21 20 19 24 24 H 1.09009 * 109.46914 * 302.03190 * 1 2 3 25 25 H 1.08997 * 109.47385 * 62.03020 * 1 2 3 26 26 H 1.09001 * 109.47141 * 182.03410 * 1 2 3 27 27 H 1.08993 * 109.47258 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.46651 * 300.00157 * 3 2 1 29 29 H 1.08998 * 109.46826 * 60.00013 * 3 2 1 30 30 H 1.09006 * 109.47087 * 298.58978 * 4 2 1 31 31 H 1.08998 * 109.47279 * 58.59035 * 4 2 1 32 32 H 1.09002 * 109.47289 * 178.59337 * 4 2 1 33 33 H 1.08998 * 109.47841 * 175.39438 * 5 2 1 34 34 H 1.09004 * 109.47406 * 295.39832 * 5 2 1 35 35 H 1.08995 * 109.47356 * 202.10107 * 7 6 5 36 36 H 1.09002 * 109.47229 * 322.10530 * 7 6 5 37 37 H 0.97002 * 119.99660 * 180.02562 * 11 10 8 38 38 H 1.08002 * 124.57114 * 359.97438 * 19 18 16 39 39 H 1.07998 * 123.47950 * 180.21854 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0401 -0.7212 1.2492 6 7 1.4633 -2.0667 1.3059 7 6 2.1578 -3.1889 0.6697 8 6 3.2345 -3.7009 1.5916 9 1 3.3307 -3.2947 2.5876 10 6 4.0968 -4.6879 1.1634 11 7 3.9793 -5.1828 -0.0494 12 14 5.4317 -5.3220 2.3057 13 1 4.8083 -5.8949 3.5257 14 1 6.2192 -6.3725 1.6117 15 1 6.3294 -4.2024 2.6876 16 6 0.2937 -2.2722 1.9433 17 8 -0.3101 -1.3323 2.4245 18 6 -0.2529 -3.6340 2.0573 19 6 0.5063 -4.7575 1.9562 20 16 -0.4517 -6.1553 2.1379 21 6 -1.9168 -5.2145 2.3575 22 17 -3.4940 -5.8886 2.6253 23 6 -1.6502 -3.9141 2.2950 24 1 -0.3633 0.5451 0.8713 25 1 -0.3634 0.4820 -0.9076 26 1 -0.3633 -1.0270 0.0365 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6974 -1.7559 -1.2368 31 1 1.6561 -0.2221 -2.1390 32 1 3.1297 -0.6994 -1.2620 33 1 3.1269 -0.7932 1.2089 34 1 1.7457 -0.1620 2.1373 35 1 1.4454 -3.9877 0.4643 36 1 2.6084 -2.8545 -0.2648 37 1 4.5857 -5.8774 -0.3506 38 1 1.5725 -4.7632 1.7839 39 1 -2.4010 -3.1459 2.4067 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189254159.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:39:20 Heat of formation + Delta-G solvation = -17.936655 kcal Electronic energy + Delta-G solvation = -22827.210082 eV Core-core repulsion = 19501.310976 eV Total energy + Delta-G solvation = -3325.899106 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.080 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.38425 -38.68820 -37.90270 -37.29019 -36.11897 -34.32287 -30.90220 -29.46194 -28.14750 -28.07034 -27.44338 -25.59931 -24.46396 -22.00069 -20.34511 -19.57282 -18.70071 -18.60994 -17.72180 -16.88011 -16.54889 -16.34934 -15.80561 -15.26904 -15.07713 -14.86720 -14.59717 -14.37060 -14.28063 -14.06019 -13.66848 -13.36544 -13.08203 -12.93058 -12.81897 -12.69813 -12.51525 -12.51259 -12.44522 -12.22049 -11.99414 -11.93021 -11.73403 -11.58686 -11.51626 -11.45875 -10.76847 -10.53672 -9.75515 -9.52702 -9.27431 -8.24015 -6.40326 -0.21799 0.10193 0.82349 0.91006 1.17163 1.42384 1.45839 1.51673 2.30954 2.32022 2.51905 3.02928 3.82819 3.92562 4.03843 4.09423 4.14196 4.45703 4.55413 4.60471 4.66424 4.77028 4.84996 4.90500 4.93391 4.97134 5.07413 5.08940 5.11034 5.19812 5.22728 5.25797 5.35838 5.52174 5.55958 5.65758 5.86307 6.01310 6.58293 6.79317 7.26170 7.39942 8.78173 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.009469 B = 0.006568 C = 0.004229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2956.236880 B = 4261.937570 C = 6619.809563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.081 4.081 3 C -0.130 4.130 4 C -0.136 4.136 5 C 0.130 3.870 6 N -0.582 5.582 7 C 0.224 3.776 8 C -0.551 4.551 9 H 0.054 0.946 10 C 0.037 3.963 11 N -0.902 5.902 12 Si 0.944 3.056 13 H -0.269 1.269 14 H -0.280 1.280 15 H -0.274 1.274 16 C 0.572 3.428 17 O -0.584 6.584 18 C -0.185 4.185 19 C -0.205 4.205 20 S 0.247 5.753 21 C -0.183 4.183 22 Cl -0.005 7.005 23 C -0.075 4.075 24 H 0.049 0.951 25 H 0.060 0.940 26 H 0.027 0.973 27 H 0.061 0.939 28 H 0.069 0.931 29 H 0.056 0.944 30 H 0.041 0.959 31 H 0.064 0.936 32 H 0.052 0.948 33 H 0.075 0.925 34 H 0.065 0.935 35 H 0.045 0.955 36 H 0.039 0.961 37 H 0.272 0.728 38 H 0.220 0.780 39 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.725 1.562 0.228 6.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.082 4.082 3 C -0.187 4.187 4 C -0.193 4.193 5 C 0.007 3.993 6 N -0.310 5.310 7 C 0.103 3.897 8 C -0.589 4.589 9 H 0.072 0.928 10 C -0.167 4.167 11 N -0.539 5.539 12 Si 0.770 3.230 13 H -0.194 1.194 14 H -0.205 1.205 15 H -0.199 1.199 16 C 0.360 3.640 17 O -0.467 6.467 18 C -0.201 4.201 19 C -0.343 4.343 20 S 0.511 5.489 21 C -0.326 4.326 22 Cl 0.023 6.977 23 C -0.106 4.106 24 H 0.068 0.932 25 H 0.079 0.921 26 H 0.046 0.954 27 H 0.080 0.920 28 H 0.088 0.912 29 H 0.075 0.925 30 H 0.060 0.940 31 H 0.083 0.917 32 H 0.071 0.929 33 H 0.093 0.907 34 H 0.084 0.916 35 H 0.062 0.938 36 H 0.057 0.943 37 H 0.082 0.918 38 H 0.236 0.764 39 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -6.779 0.301 0.325 6.793 hybrid contribution 0.481 0.990 0.526 1.220 sum -6.298 1.291 0.851 6.485 Atomic orbital electron populations 1.21713 0.94641 1.00342 1.01017 1.20931 0.95869 0.96520 0.94861 1.21736 1.01241 0.93352 1.02398 1.21917 1.00680 0.99874 0.96868 1.21494 0.97800 0.81989 0.98009 1.47936 1.20630 1.10134 1.52280 1.19940 0.91768 0.84520 0.93453 1.21547 1.15530 1.21339 1.00505 0.92752 1.25549 0.98626 0.96290 0.96219 1.69987 1.38587 1.27567 1.17781 0.85802 0.79591 0.78250 0.79390 1.19416 1.20494 1.19947 1.17677 0.80910 0.87384 0.77981 1.90661 1.60821 1.44044 1.51221 1.20035 0.93516 0.93902 1.12655 1.27958 1.09335 0.96866 1.00109 1.82882 0.92592 1.06308 1.67116 1.25094 0.93437 0.96971 1.17073 1.98337 1.19980 1.84230 1.95107 1.21052 0.94882 0.95119 0.99594 0.93237 0.92124 0.95378 0.91971 0.91174 0.92488 0.93961 0.91653 0.92870 0.90691 0.91634 0.93806 0.94339 0.91849 0.76414 0.82480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.90 7.09 71.98 0.51 -3.39 16 2 C -0.08 -2.51 0.85 -52.18 -0.04 -2.55 16 3 C -0.13 -3.17 8.47 71.98 0.61 -2.56 16 4 C -0.14 -4.27 7.57 71.98 0.54 -3.73 16 5 C 0.13 4.77 4.58 86.38 0.40 5.17 16 6 N -0.58 -24.10 1.98 -830.31 -1.64 -25.74 16 7 C 0.22 10.06 3.92 85.63 0.34 10.39 16 8 C -0.55 -26.38 7.11 25.60 0.18 -26.19 16 9 H 0.05 2.69 7.81 -2.91 -0.02 2.67 16 10 C 0.04 1.75 5.38 84.65 0.46 2.21 16 11 N -0.90 -45.25 13.29 21.45 0.28 -44.96 16 12 Si 0.94 38.70 29.54 68.60 2.03 40.73 16 13 H -0.27 -10.84 7.11 99.48 0.71 -10.14 16 14 H -0.28 -11.25 7.11 99.48 0.71 -10.55 16 15 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 16 C 0.57 24.39 5.94 86.59 0.51 24.90 16 17 O -0.58 -26.20 14.49 -4.16 -0.06 -26.26 16 18 C -0.18 -7.30 5.66 -19.87 -0.11 -7.42 16 19 C -0.21 -7.96 8.44 67.29 0.57 -7.39 16 20 S 0.25 7.64 23.02 -56.49 -1.30 6.34 16 21 C -0.18 -5.57 7.01 66.64 0.47 -5.10 16 22 Cl 0.00 -0.12 29.27 -2.72 -0.08 -0.20 16 23 C -0.08 -2.57 10.11 22.69 0.23 -2.34 16 24 H 0.05 1.69 7.52 -2.38 -0.02 1.67 16 25 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.03 1.04 6.04 -2.39 -0.01 1.02 16 27 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.04 1.54 5.61 -2.38 -0.01 1.52 16 31 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.07 2.78 8.07 -2.39 -0.02 2.76 16 34 H 0.07 2.46 7.46 -2.39 -0.02 2.44 16 35 H 0.04 2.06 4.59 -2.39 -0.01 2.05 16 36 H 0.04 1.83 5.62 -2.39 -0.01 1.81 16 37 H 0.27 13.03 8.31 -92.71 -0.77 12.26 16 38 H 0.22 9.64 3.23 -2.91 -0.01 9.63 16 39 H 0.16 5.12 8.06 -2.91 -0.02 5.10 16 Total: -1.00 -52.09 336.22 4.96 -47.13 By element: Atomic # 1 Polarization: 19.90 SS G_CDS: 1.07 Total: 20.97 kcal Atomic # 6 Polarization: -22.66 SS G_CDS: 4.66 Total: -18.01 kcal Atomic # 7 Polarization: -69.34 SS G_CDS: -1.36 Total: -70.70 kcal Atomic # 8 Polarization: -26.20 SS G_CDS: -0.06 Total: -26.26 kcal Atomic # 14 Polarization: 38.70 SS G_CDS: 2.03 Total: 40.73 kcal Atomic # 16 Polarization: 7.64 SS G_CDS: -1.30 Total: 6.34 kcal Atomic # 17 Polarization: -0.12 SS G_CDS: -0.08 Total: -0.20 kcal Total: -52.09 4.96 -47.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189254159.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.197 kcal (2) G-P(sol) polarization free energy of solvation -52.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds